# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1uch 230 1.86e+00 1uch d.3.1.6 37129 1xd3A 230 2.81e+00 1qwvA 142 4.36e+00 a.39.2.1 96506 2eboA 74 6.25e+00 2eboA h.3.2.1 45754 1ikoP 178 9.90e+00 b.6.1.5 71243 1pms 136 1.07e+01 1awe b.55.1.1 26966 1jxcA 68 1.26e+01 g.3.7.5 77201 1rip 81 1.32e+01 1rip b.40.4.5 25357 1xfrA 128 1.39e+01 1ifrA 121 1.40e+01 b.1.16.1 71203 1f06A 320 1.48e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 1je6A 275 1.51e+01 b.1.1.2,d.19.1.1 71638,71639 1ex7A 186 1.54e+01 1gky c.37.1.1 59537 1gm0A 142 1.74e+01 a.39.2.1 65297 1dapA 320 1.76e+01 1dapA c.2.1.3,d.81.1.3 30053,39968 3dapA 320 1.84e+01 1dapA c.2.1.3,d.81.1.3 30051,39966 1fslA 143 1.86e+01 2gdm a.1.1.2 15229 1gky 187 1.93e+01 1gky c.37.1.1 31839 1ltqA 301 2.02e+01 c.108.1.9,c.37.1.1 78208,78209 1aokB 122 2.06e+01 1poa a.133.1.2 19561 1binA 143 2.12e+01 2gdm a.1.1.2 15231 1ly1A 181 2.15e+01 c.37.1.1 74334 1gdtA 183 2.15e+01 2rslA a.4.1.2,c.53.1.1 16021,33348 1xhbA 472 2.46e+01 1binB 143 2.46e+01 2gdm a.1.1.2 15232 1ibvB 229 2.50e+01 1dqeA 137 2.66e+01 1dqeA a.39.2.1 17388 1jltB 122 2.84e+01 a.133.1.2 66868 1yn4A 99 3.19e+01 1iq3A 110 3.30e+01 1iq3A a.39.1.6 62640 1pyaB 228 3.34e+01 1pyaB 1hlb 158 3.36e+01 1hlb a.1.1.2 15625 1fjrA 195 3.39e+01 1fjrA b.102.1.1 59855 1x6iA 91 3.39e+01 1s3jA 155 3.47e+01 a.4.5.28 98437 1prcH 259 3.51e+01 6prcH b.41.1.1,f.23.10.1 25460,43445 1dxrH 258 3.56e+01 6prcH b.41.1.1,f.23.10.1 25456,43433 6prcH 258 3.81e+01 6prcH b.41.1.1,f.23.10.1 25457,43436 2cfxA 144 3.82e+01 1ls8A 142 3.99e+01 a.39.2.1 78176 1d8hA 311 4.03e+01 1d8iA d.63.1.1 39544 1i4sA 147 4.07e+01 a.149.1.1 66026 1vj2A 126 4.08e+01 b.82.1.10 100796 1d8iA 311 4.27e+01 1d8iA d.63.1.1 39541 1zvdA 380 4.27e+01 1kum 108 4.34e+01 1kum b.3.1.1 22525 1o0sA 605 4.35e+01 c.2.1.7,c.58.1.3 86540,86541 1a41 234 4.35e+01 1a41 d.163.1.2 42174 1jfzA 154 4.50e+01 a.149.1.1 66655 1hv2A 99 4.52e+01 d.42.1.1 61287 1qryA 80 4.56e+01 2hddA a.4.1.1 16016 2azeA 155 4.59e+01 2ez6A 221 4.80e+01 1bawA 105 4.91e+01 1plc b.6.1.1 22868 1mwwA 128 4.98e+01 d.80.1.4 91483 1y8oB 128 5.05e+01 2lefA 86 5.13e+01 2lefA a.21.1.1 16433 1lvl 458 5.16e+01 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 1bdb 277 5.41e+01 1bdb c.2.1.2 29874 1ve0A 134 5.48e+01 1uunA 184 5.55e+01 f.6.1.2 100012 1ocxA 182 5.56e+01 b.81.1.3 86814 1xtlA 175 5.57e+01 1o75A 415 5.72e+01 b.1.20.1,b.1.20.1,b.120.1.1 81117,81118,81119 1awe 130 5.77e+01 1awe b.55.1.1 26968 1xtmA 175 5.78e+01 2f1rA 171 5.81e+01 1s4iA 175 5.95e+01 1fjgI 128 6.28e+01 1fjfI d.14.1.1 37559 1ov3A 138 6.32e+01 b.34.2.1,b.34.2.1 87451,87452 1ycdA 243 6.33e+01 1acz 108 6.35e+01 1kum b.3.1.1 22524 1gdvA 85 6.49e+01 1ctj a.3.1.1 60458 1dm9A 133 6.61e+01 1dm9A d.66.1.3 39560 1fp1D 372 6.69e+01 1fpqA a.4.5.29,c.66.1.12 59939,59940 2c52B 59 6.72e+01 1bct 69 6.78e+01 1bct j.35.1.1 46237 1lnwA 147 6.81e+01 a.4.5.28 78104 1bkjA 240 6.86e+01 1bkjA d.90.1.1 40243 1fftB 315 6.93e+01 1cyx b.6.1.2,f.17.2.1 23025,43628 1twuA 139 7.01e+01 d.32.1.8 107413 1fdr 248 7.05e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1m1jA 491 7.23e+01 h.1.8.1 74369 2auwA 170 7.58e+01 1cqzA 554 7.63e+01 1cr6B c.69.1.11,c.108.1.2 34689,43339 1ng2A 193 7.74e+01 b.34.2.1,b.34.2.1 85660,85661 1yemA 179 7.86e+01 1m98A 317 7.98e+01 a.175.1.1,d.17.4.6 78866,78867 1vl7A 157 8.34e+01 b.45.1.1 108732 1yioA 208 8.48e+01 1l0lG 81 8.54e+01 f.23.13.1 84493 1zn8A 180 8.58e+01 1ac0 108 8.82e+01 1kum b.3.1.1 22526 1lj2A 110 8.92e+01 h.1.13.2 73926 1he7A 126 8.92e+01 1wwcA b.1.1.4 60970