# List of top-scoring protein chains for t06-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ebfA 358 1.11e-01 1ebuA c.2.1.3,d.81.1.2 30033,39948 3pcgA 200 7.93e-01 3pchA b.3.6.1 22647 2dbbA 151 1.47e+00 1tu1A 148 1.60e+00 d.107.1.3 107316 1twuA 139 1.66e+00 d.32.1.8 107413 3proC 166 2.13e+00 3proC d.52.1.1,d.52.1.1 38812,38813 1v8fA 276 2.14e+00 c.26.1.4 100503 1kao 167 3.29e+00 1ctqA c.37.1.8 32014 2c52B 59 3.33e+00 2d93A 134 3.34e+00 1h8eH 146 3.35e+00 1e79H b.93.1.1 60757 2basA 431 3.36e+00 2cyeA 133 3.43e+00 2evwX 166 4.00e+00 1ohpA 125 4.40e+00 1xakA 83 4.75e+00 1pyaB 228 4.79e+00 1pyaB 1o0iA 138 4.90e+00 d.38.1.5 86532 1g55A 343 4.97e+00 1g55A c.66.1.26 34247 1ecrA 309 5.42e+00 1ecrA e.2.1.1 42678 2b20A 403 5.82e+00 2b18A 164 6.21e+00 1x4rA 99 7.33e+00 1zpvA 91 7.58e+00 1yhfA 115 7.86e+00 2h3bA 494 8.11e+00 1vr3A 191 8.19e+00 1jae 471 9.14e+00 1smd b.71.1.1,c.1.8.1 27773,28760 1ki0A 253 9.45e+00 g.14.1.1,g.14.1.1,g.14.1.1 72493,72494,72495 1ifrA 121 9.78e+00 b.1.16.1 71203 1t6aA 126 9.86e+00 d.129.8.1 106555 2a90A 240 1.01e+01 1e19A 314 1.04e+01 1b7bA c.73.1.1 34967 1h2wA 710 1.05e+01 b.69.7.1,c.69.1.4 76596,76597 1vk0A 206 1.05e+01 c.55.3.5 100839 1smd 496 1.07e+01 1smd b.71.1.1,c.1.8.1 27768,28755 1ois 223 1.08e+01 1a36A e.15.1.1 43267 2bmoB 194 1.10e+01 1qwtA 255 1.15e+01 b.26.1.3 96501 2as0A 396 1.16e+01 1ctqA 166 1.23e+01 1ctqA c.37.1.8 31965 1jxcA 68 1.25e+01 g.3.7.5 77201 1lj5A 379 1.25e+01 e.1.1.1 73928 1rgxA 114 1.33e+01 g.77.1.1 104932 2cfxA 144 1.34e+01 1eazA 125 1.45e+01 b.55.1.1 70113 1fzqA 181 1.52e+01 1hurA c.37.1.8 32060 2bukA 196 1.58e+01 1x9gA 200 1.61e+01 c.33.1.3 109527 1x82A 190 1.62e+01 1x1rA 178 1.72e+01 1y7rA 133 1.76e+01 1bkjA 240 1.78e+01 1bkjA d.90.1.1 40243 1jyhA 157 1.82e+01 d.60.1.3 71956 2gj8A 172 1.87e+01 1hx0A 496 1.88e+01 b.71.1.1,c.1.8.1 61346,61347 1ve6A 582 1.89e+01 1v54G 85 1.98e+01 f.23.2.1 100328 1tiqA 180 1.99e+01 d.108.1.1 107010 1wwjA 105 2.03e+01 1v8hA 107 2.06e+01 2a74A 643 2.16e+01 1o6aA 96 2.16e+01 b.139.1.1 92562 1bcpF 99 2.17e+01 1prtF b.40.2.1 25142 1ze3D 125 2.23e+01 2gkpA 167 2.28e+01 1fjrA 195 2.29e+01 1fjrA b.102.1.1 59855 1dfmA 223 2.32e+01 1d2iA c.52.1.5 33295 2bjuA 453 2.35e+01 1hpi 71 2.37e+01 1ckuA g.35.1.1 44995 2axyA 73 2.37e+01 2erxA 172 2.39e+01 1jb0C 80 2.55e+01 1jb0C d.58.1.2 62822 1xvsA 126 2.66e+01 2cjtA 131 2.66e+01 1q1oA 98 2.69e+01 d.15.2.2 95596 1y9wA 140 2.72e+01 2bnmA 198 2.72e+01 1ugjA 141 2.76e+01 b.41.1.3 107826 1wgkA 114 2.91e+01 1njhA 119 2.95e+01 b.128.1.1 85787 1v3yA 192 2.98e+01 1fp1D 372 3.01e+01 1fpqA a.4.5.29,c.66.1.12 59939,59940 2faoA 309 3.05e+01 1b34B 118 3.12e+01 1b34B b.38.1.1 24797 1iwmA 186 3.23e+01 b.125.1.2 83758 1vetA 124 3.25e+01 d.110.7.1 108553 1dbhA 354 3.34e+01 1awe a.87.1.1,b.55.1.1 18514,26967 1jpyA 137 3.34e+01 g.17.1.6 67065 1gdvA 85 3.35e+01 1ctj a.3.1.1 60458 1d0dA 60 3.37e+01 1kigI g.8.1.2 44566 2a84A 300 3.38e+01 1uw4A 91 3.43e+01 d.58.7.4 100071 2cttA 104 3.51e+01 1zsyA 357 3.62e+01 1gvp 87 3.63e+01 1gvp b.40.4.7 25369 2fswA 107 3.69e+01 1he7A 126 3.76e+01 1wwcA b.1.1.4 60970 1iybA 208 3.81e+01 d.124.1.1 90720 1dhkB 223 3.83e+01 1led b.29.1.1 24157 2czsA 80 3.84e+01 1nnxA 109 3.85e+01 b.40.10.1 92013 1n2eA 300 3.91e+01 c.26.1.4 85268 2gfaA 119 3.96e+01 1fgkA 310 4.10e+01 1fgkA d.144.1.7 41693 1ddwA 120 4.17e+01 1evhA b.55.1.4 27001 1d8hA 311 4.26e+01 1d8iA d.63.1.1 39544 1v25A 541 4.29e+01 e.23.1.1 108275 2f9lA 199 4.35e+01 3tdt 274 4.39e+01 3tdt b.81.1.2 28053 2bmjA 178 4.44e+01 1uteA 313 4.50e+01 1uteA d.159.1.1 42078 2apr 325 4.59e+01 2er7E b.50.1.2 26819 1m7vA 363 4.64e+01 d.174.1.1 78748 2a6hE 99 4.70e+01 1wddS 128 4.86e+01 2bkrA 212 4.88e+01 2a5jA 191 4.93e+01 1svy 114 5.05e+01 1svy d.109.1.1 40831 1wi5A 119 5.11e+01 1mwwA 128 5.12e+01 d.80.1.4 91483 1vqoQ 96 5.12e+01 1kdj 102 5.19e+01 1plc b.6.1.1 22864 1jsuC 84 5.20e+01 1jsuC j.55.1.1 46339 1cojA 212 5.21e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1q7lA 198 5.32e+01 c.56.5.4 96044 1yuiA 54 5.57e+01 1yuiA g.37.1.1 45073 1zr0B 63 5.60e+01 2gn4A 344 5.61e+01 1lcyA 325 5.70e+01 b.36.1.4,b.47.1.1 73834,73835 1uunA 184 5.74e+01 f.6.1.2 100012 1dxrH 258 5.74e+01 6prcH b.41.1.1,f.23.10.1 25456,43433 1g94A 448 5.82e+01 b.71.1.1,c.1.8.1 65169,65170 1ogaE 252 5.83e+01 b.1.1.1,b.1.1.2 86992,86993 1ga3A 113 5.87e+01 1ga3A a.26.1.2 60411 1tqzA 133 5.92e+01 2f6hX 419 5.93e+01 1mpp 361 6.00e+01 2rmpA b.50.1.2 26856 1amx 180 6.01e+01 1amx b.2.3.1 22410 1ly1A 181 6.02e+01 c.37.1.1 74334 2exnA 136 6.07e+01 1xl3C 92 6.08e+01 2frnA 278 6.14e+01 1j83A 180 6.28e+01 b.18.1.12 66430 1xiyA 182 6.31e+01 1ctj 89 6.31e+01 1ctj a.3.1.1 15798 1mpxA 615 6.34e+01 b.18.1.13,c.69.1.21 85041,85042 1ogdA 131 6.39e+01 c.133.1.1 92893 1djrD 103 6.42e+01 3chbD b.40.2.1 24865 2axtE 84 6.43e+01 2gx9A 129 6.44e+01 1rwrA 301 6.45e+01 b.80.1.11 97990 1g8kA 825 6.50e+01 1g8jA b.52.2.2,c.81.1.1 26920,35328 1y29A 28 6.53e+01 1x99A 145 6.53e+01 1s3cA 141 6.54e+01 1luzA 88 6.57e+01 b.40.4.5 74271 1ub1A 133 6.60e+01 d.10.1.3 99140 1dmhA 311 6.60e+01 1dmhA b.3.6.1 22633 1un7A 400 6.72e+01 b.92.1.5,c.1.9.10 99657,99658 1r7lA 110 6.79e+01 d.277.1.1 104837 1ou8A 111 6.80e+01 b.136.1.1 93543 1jltB 122 6.84e+01 a.133.1.2 66868 1g6aA 271 6.85e+01 1btl e.3.1.1 42704 2fhzB 108 6.88e+01 1y8oB 128 6.88e+01 3vub 101 6.91e+01 3vub b.34.6.1 24613 1osyA 115 6.93e+01 b.1.21.1 93502 1ujnA 348 6.96e+01 e.22.1.1 99460 1mj4A 82 6.97e+01 d.120.1.1 79189 2db9A 149 6.98e+01 1wz9A 375 7.01e+01 1rg9A 383 7.02e+01 d.130.1.1,d.130.1.1,d.130.1.1 97427,97428,97429 1sqwA 188 7.07e+01 2c7pA 327 7.07e+01 2c27A 315 7.20e+01 1xq8A 140 7.24e+01 1cl8A 276 7.24e+01 1ckqA c.52.1.1 33230 2bzvA 181 7.26e+01 3ullA 132 7.29e+01 3ullA b.40.4.3 25282 1w2xA 758 7.33e+01 c.14.1.4,c.14.1.4 109134,109135 1sxvA 172 7.35e+01 1gcqC 70 7.36e+01 1gcpA b.34.2.1 60436 2fhfA 1083 7.39e+01 1f5mA 180 7.41e+01 1f5mB d.110.2.1 40895 1xcbA 211 7.41e+01 a.4.5.38,c.2.1.12 109552,109553 2fn4A 181 7.41e+01 1t46A 313 7.49e+01 d.144.1.7 106397 1yukB 120 7.50e+01 1u58A 253 7.60e+01 1ltqA 301 7.61e+01 c.108.1.9,c.37.1.1 78208,78209 2ff4A 388 7.66e+01 1eylA 186 7.70e+01 1wba b.42.4.1 25593 1bcpD 110 7.74e+01 1bcpD b.40.2.1 25132 1sc6A 404 7.75e+01 1mngA 203 7.78e+01 1avmA a.2.11.1,d.44.1.1 15776,38701 1wyuA 438 7.80e+01 2cvdA 198 7.81e+01 1eybA 471 7.91e+01 1ey2A b.82.1.4 28115 1ia8A 289 7.95e+01 1ia8A d.144.1.7 62112 1wteA 272 7.95e+01 1s5rA 23 7.96e+01 j.114.1.1 105280 1d4xG 126 8.09e+01 1d0nA d.109.1.1 59109 1u07A 90 8.19e+01 2a6sA 84 8.19e+01 1jmcA 246 8.20e+01 1jmcA b.40.4.3,b.40.4.3 25300,25301 1xtqA 177 8.26e+01 2fsqA 243 8.26e+01 2bf9A 36 8.31e+01 1ti6B 274 8.32e+01 b.3.5.1,d.58.1.5 106976,106977 1bb9 115 8.35e+01 1bb9 b.34.2.1 24554 1vehA 92 8.41e+01 1k3bA 119 8.43e+01 b.61.5.1 72016 1dbxA 158 8.47e+01 1dbuA d.116.1.1 40928 1umkA 275 8.48e+01 1i0vA 104 8.49e+01 9rnt d.1.1.4 36054 1l6sA 323 8.52e+01 c.1.10.3 73627 2cdpA 160 8.59e+01 2azeB 106 8.60e+01 1q9rA 219 8.61e+01 b.1.1.1,b.1.1.2 96305,96306 1wn5A 130 8.71e+01 2cvcA 545 8.72e+01 1ci9A 392 8.73e+01 e.3.1.1 64767 1yycA 174 8.74e+01 1i2aA 219 8.74e+01 e.24.1.1 90660 1xebA 150 8.74e+01 1m93B 245 8.78e+01 1c1lA 136 8.88e+01 1c1lA b.29.1.3 24219 1l0wA 580 8.99e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428