# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1tu1A 148 8.16e-01 d.107.1.3 107316 1fjrA 195 1.30e+00 1fjrA b.102.1.1 59855 2bjuA 453 2.37e+00 1d8hA 311 2.45e+00 1d8iA d.63.1.1 39544 1mwwA 128 3.30e+00 d.80.1.4 91483 1ebfA 358 3.64e+00 1ebuA c.2.1.3,d.81.1.2 30033,39948 1f5mA 180 4.05e+00 1f5mB d.110.2.1 40895 1o0sA 605 4.52e+00 c.2.1.7,c.58.1.3 86540,86541 1ltqA 301 5.21e+00 c.108.1.9,c.37.1.1 78208,78209 1ly1A 181 5.47e+00 c.37.1.1 74334 2bmwA 304 8.65e+00 1ogiA 303 8.66e+00 b.43.4.2,c.25.1.1 92914,92915 2b18A 164 8.75e+00 1fxoA 293 9.23e+00 1g0rA c.68.1.6 34524 2gj8A 172 9.46e+00 1gky 187 9.87e+00 1gky c.37.1.1 31839 1ex7A 186 9.89e+00 1gky c.37.1.1 59537 1y8oB 128 1.13e+01 1fnd 314 1.14e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1g2qA 187 1.17e+01 c.61.1.1 65117 1bx1A 314 1.17e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1dkzA 219 1.18e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 1sxvA 172 1.30e+01 3proC 166 1.31e+01 3proC d.52.1.1,d.52.1.1 38812,38813 1vj0A 380 1.38e+01 b.35.1.2,c.2.1.1 100786,100787 1g55A 343 1.38e+01 1g55A c.66.1.26 34247 1x82A 190 1.40e+01 1dp4A 435 1.52e+01 1dp4A c.93.1.1 35710 1b9wA 89 1.55e+01 1b9wA g.3.11.4,g.3.11.4 44334,44335 1prxA 224 1.57e+01 1prxA c.47.1.10 33076 1jltB 122 1.65e+01 a.133.1.2 66868 1cl8A 276 1.65e+01 1ckqA c.52.1.1 33230 1cjwA 166 1.72e+01 1cjwA d.108.1.1 40818 1kdj 102 1.84e+01 1plc b.6.1.1 22864 1wxxA 382 1.88e+01 2cwsA 237 1.93e+01 1mrzA 293 1.95e+01 b.43.5.1,c.26.1.3 91452,91453 2bokA 241 2.09e+01 1f28A 297 2.13e+01 1bkpA d.117.1.1 59608 1vj2A 126 2.26e+01 b.82.1.10 100796 1xl3C 92 2.33e+01 2cyeA 133 2.35e+01 2f1lA 187 2.37e+01 2b20A 403 2.53e+01 1y5eA 169 2.54e+01 2b1xA 470 2.57e+01 1twuA 139 2.58e+01 d.32.1.8 107413 1y7rA 133 2.76e+01 2blkA 122 2.83e+01 1kao 167 3.21e+01 1ctqA c.37.1.8 32014 3sil 379 3.22e+01 3sil b.68.1.1 27542 1dmhA 311 3.24e+01 1dmhA b.3.6.1 22633 2as0A 396 3.29e+01 2cjtA 131 3.33e+01 1xg8A 111 3.37e+01 1ryoA 327 3.49e+01 c.94.1.2 98108 1gppA 237 3.50e+01 b.86.1.2 76262 1udc 338 3.55e+01 1xel c.2.1.2 29785 2axyA 73 3.56e+01 1o0iA 138 3.66e+01 d.38.1.5 86532 1gt1A 159 3.72e+01 b.60.1.1 90515 1w2lA 99 3.76e+01 1m0wA 491 4.04e+01 c.30.1.4,d.142.1.6 78363,78364 1t46A 313 4.19e+01 d.144.1.7 106397 1yewA 382 4.19e+01 2d4rA 147 4.28e+01 1xewY 172 4.30e+01 2bvfA 459 4.35e+01 1gdvA 85 4.42e+01 1ctj a.3.1.1 60458 2cz2A 223 4.43e+01 2gdnA 267 4.49e+01 2a5jA 191 4.55e+01 1vh4A 435 4.60e+01 b.80.6.1 100640 2b6nA 278 4.70e+01 1l6sA 323 4.75e+01 c.1.10.3 73627 1g2oA 268 4.80e+01 1b8oA c.56.2.1 60228 1sqeA 109 4.83e+01 d.58.4.5 105908 1res 43 4.86e+01 1ret a.4.1.2 16023 1zgoA 223 4.88e+01 1h12A 405 5.02e+01 a.102.1.2 83447 1eljA 381 5.12e+01 4mbp c.94.1.1 35791 2bkyA 97 5.22e+01 1fadA 99 5.32e+01 1fadA a.77.1.2 18428 1uyrA 737 5.45e+01 c.14.1.4,c.14.1.4 100188,100189 1stzA 338 5.46e+01 a.4.5.51,d.110.2.3 106009,106010 1tmxA 293 5.50e+01 1tvgA 153 5.55e+01 1xd3A 230 5.56e+01 2apr 325 5.60e+01 2er7E b.50.1.2 26819 1xneA 113 5.65e+01 1qy1A 174 5.81e+01 b.60.1.1 96568 1pyaB 228 5.81e+01 1pyaB 1bb9 115 5.82e+01 1bb9 b.34.2.1 24554 2gcuA 245 5.83e+01 1zndA 174 5.84e+01 1h5rA 293 5.87e+01 c.68.1.6 65623 1rq2A 382 6.01e+01 c.32.1.1,d.79.2.1 105048,105049 1fzqA 181 6.15e+01 1hurA c.37.1.8 32060 2ffcA 353 6.21e+01 1w2xA 758 6.29e+01 c.14.1.4,c.14.1.4 109134,109135 1o1yA 239 6.29e+01 c.23.16.1 86554 2bukA 196 6.50e+01 1zj8A 566 6.53e+01 2b4wA 315 6.75e+01 1sh8A 154 6.78e+01 d.38.1.5 105549 1t44G 147 6.82e+01 d.109.1.1 106395 1vl2A 421 6.89e+01 c.26.2.1,d.210.1.1 108708,108709 1tvdA 116 6.90e+01 1tvdA b.1.1.1 20650 1xkzA 255 6.90e+01 1d4xG 126 7.06e+01 1d0nA d.109.1.1 59109 1ocxA 182 7.13e+01 b.81.1.3 86814 1hgxA 183 7.16e+01 1tc1A c.61.1.1 34027 1h8eH 146 7.21e+01 1e79H b.93.1.1 60757 1tqnA 486 7.23e+01 a.104.1.1 107238 1uj6A 227 7.24e+01 c.124.1.4,d.58.40.1 107898,107899 1dm9A 133 7.46e+01 1dm9A d.66.1.3 39560 1ze3D 125 7.46e+01 1j8bA 112 7.60e+01 d.222.1.1 77101 1fmb 104 7.67e+01 1fmb b.50.1.1 26777 2h3bA 494 7.68e+01 1m40A 263 7.78e+01 e.3.1.1 74437 2evwX 166 7.83e+01 1wb9A 800 7.85e+01 1ryqA 69 7.92e+01 g.41.9.3 105126 2bkrA 212 8.00e+01 1ra9 159 8.00e+01 1vdrA c.71.1.1 34820 1bkjA 240 8.07e+01 1bkjA d.90.1.1 40243 1o7qA 289 8.28e+01 c.68.1.9 92626 1wdvA 152 8.46e+01 1cp2A 269 8.50e+01 1cp2A c.37.1.10 32269 2cx7A 130 8.50e+01 1jxcA 68 8.53e+01 g.3.7.5 77201 1b65A 375 8.54e+01 1b65A d.154.1.1 42020 1wchA 315 8.68e+01 2ch4A 320 8.69e+01 1wloA 136 8.69e+01 2cviA 83 8.70e+01 1twiA 434 8.70e+01 b.49.2.3,c.1.6.1 107399,107400 1xtmA 175 8.80e+01 1xffA 240 8.80e+01 d.153.1.1 109580 1m7vA 363 8.84e+01 d.174.1.1 78748 1wthD 391 8.95e+01 2eveA 157 8.99e+01