# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1fjrA 195 1.15e+00 1fjrA b.102.1.1 59855 1ly1A 181 1.61e+00 c.37.1.1 74334 1f5mA 180 2.43e+00 1f5mB d.110.2.1 40895 1tu1A 148 2.74e+00 d.107.1.3 107316 1v8fA 276 3.20e+00 c.26.1.4 100503 1b65A 375 3.53e+00 1b65A d.154.1.1 42020 1ltqA 301 4.00e+00 c.108.1.9,c.37.1.1 78208,78209 1d8hA 311 4.42e+00 1d8iA d.63.1.1 39544 2b18A 164 5.15e+00 1ebfA 358 5.35e+00 1ebuA c.2.1.3,d.81.1.2 30033,39948 1y8oB 128 5.58e+00 3proC 166 6.10e+00 3proC d.52.1.1,d.52.1.1 38812,38813 1sxvA 172 6.32e+00 1o0sA 605 7.50e+00 c.2.1.7,c.58.1.3 86540,86541 1mwwA 128 7.64e+00 d.80.1.4 91483 1x82A 190 7.89e+00 1ex7A 186 8.31e+00 1gky c.37.1.1 59537 1f28A 297 8.35e+00 1bkpA d.117.1.1 59608 1gky 187 8.44e+00 1gky c.37.1.1 31839 1bb9 115 8.77e+00 1bb9 b.34.2.1 24554 2f1lA 187 8.86e+00 2bokA 241 9.36e+00 1vj0A 380 9.60e+00 b.35.1.2,c.2.1.1 100786,100787 1ocxA 182 1.03e+01 b.81.1.3 86814 1aym3 238 1.09e+01 1aym3 1dkzA 219 1.10e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 1mrzA 293 1.12e+01 b.43.5.1,c.26.1.3 91452,91453 2b1xA 470 1.14e+01 2axyA 73 1.25e+01 1g55A 343 1.26e+01 1g55A c.66.1.26 34247 2bjuA 453 1.30e+01 1kdj 102 1.34e+01 1plc b.6.1.1 22864 1pyaB 228 1.37e+01 1pyaB 1fxoA 293 1.38e+01 1g0rA c.68.1.6 34524 1dmhA 311 1.52e+01 1dmhA b.3.6.1 22633 2b20A 403 1.58e+01 1dp4A 435 1.62e+01 1dp4A c.93.1.1 35710 1rliA 184 1.64e+01 c.23.5.6 97647 3sil 379 1.84e+01 3sil b.68.1.1 27542 1ryoA 327 1.86e+01 c.94.1.2 98108 1b9wA 89 1.89e+01 1b9wA g.3.11.4,g.3.11.4 44334,44335 2cwsA 237 2.00e+01 1vj2A 126 2.03e+01 b.82.1.10 100796 2cjtA 131 2.13e+01 2bmwA 304 2.19e+01 1e19A 314 2.27e+01 1b7bA c.73.1.1 34967 1xl3C 92 2.29e+01 2cyeA 133 2.35e+01 1ifrA 121 2.38e+01 b.1.16.1 71203 2gj8A 172 2.41e+01 1w2lA 99 2.41e+01 1ogiA 303 2.45e+01 b.43.4.2,c.25.1.1 92914,92915 1xkzA 255 2.47e+01 1fadA 99 2.50e+01 1fadA a.77.1.2 18428 2dbbA 151 2.52e+01 1xd3A 230 2.54e+01 1wxxA 382 2.55e+01 1gdvA 85 2.62e+01 1ctj a.3.1.1 60458 1m40A 263 2.64e+01 e.3.1.1 74437 2blkA 122 2.66e+01 1xg8A 111 2.67e+01 1y5eA 169 2.67e+01 1gcqC 70 2.82e+01 1gcpA b.34.2.1 60436 1o0iA 138 2.89e+01 d.38.1.5 86532 1gppA 237 2.89e+01 b.86.1.2 76262 1vh4A 435 3.14e+01 b.80.6.1 100640 1h12A 405 3.18e+01 a.102.1.2 83447 2a6hC 1119 3.20e+01 1i19A 561 3.25e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 1x9gA 200 3.26e+01 c.33.1.3 109527 1mwmA 320 3.38e+01 c.55.1.1,c.55.1.1 79580,79581 1tmxA 293 3.48e+01 2as0A 396 3.50e+01 1ois 223 3.53e+01 1a36A e.15.1.1 43267 1zgoA 223 3.56e+01 1o1yA 239 3.59e+01 c.23.16.1 86554 2cz2A 223 3.63e+01 2cfxA 144 3.65e+01 1jltB 122 3.67e+01 a.133.1.2 66868 1y7rA 133 3.70e+01 1yzfA 195 3.73e+01 1xneA 113 3.80e+01 1prxA 224 3.84e+01 1prxA c.47.1.10 33076 1m0wA 491 3.98e+01 c.30.1.4,d.142.1.6 78363,78364 1wdvA 152 3.98e+01 1cl8A 276 3.99e+01 1ckqA c.52.1.1 33230 1wkaA 147 4.02e+01 1b8aA 438 4.10e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 2faoA 309 4.10e+01 1bs0A 384 4.26e+01 1bs0A c.67.1.4 34490 2cviA 83 4.28e+01 1ctj 89 4.33e+01 1ctj a.3.1.1 15798 1k7kA 221 4.33e+01 c.51.4.1 72104 1rlw 126 4.48e+01 1rlw b.7.1.1 23177 2bkyA 97 4.50e+01 1res 43 4.52e+01 1ret a.4.1.2 16023 1fuiA 591 4.72e+01 1fuiA b.43.2.1,c.85.1.1 25674,35444 1udc 338 4.81e+01 1xel c.2.1.2 29785 1vk0A 206 4.86e+01 c.55.3.5 100839 3pcgA 200 4.93e+01 3pchA b.3.6.1 22647 1jae 471 5.00e+01 1smd b.71.1.1,c.1.8.1 27773,28760 1t46A 313 5.01e+01 d.144.1.7 106397 1u04A 771 5.10e+01 b.34.14.1,c.55.3.10 107539,107540 1kutA 230 5.13e+01 d.143.1.1 73017 1f39A 101 5.13e+01 1umuA b.87.1.1 28386 1ze3D 125 5.14e+01 1sddA 306 5.16e+01 b.6.1.3,b.6.1.3 105431,105432 1zndA 174 5.26e+01 1qy1A 174 5.27e+01 b.60.1.1 96568 2cglA 489 5.38e+01 1vhoA 346 5.55e+01 b.49.3.1,c.56.5.4 100694,100695 2a9dA 372 5.57e+01 1zj8A 566 5.64e+01 1j83A 180 5.76e+01 b.18.1.12 66430 1rq2A 382 5.81e+01 c.32.1.1,d.79.2.1 105048,105049 1wd3A 482 5.82e+01 b.29.1.21,b.42.8.1 109233,109234 1uyrA 737 5.83e+01 c.14.1.4,c.14.1.4 100188,100189 1vl2A 421 5.96e+01 c.26.2.1,d.210.1.1 108708,108709 2b4wA 315 5.98e+01 1l6sA 323 5.99e+01 c.1.10.3 73627 2d4rA 147 6.03e+01 1jyhA 157 6.06e+01 d.60.1.3 71956 1x0vA 354 6.07e+01 1ppjB 439 6.11e+01 d.185.1.1,d.185.1.1 104254,104255 1ub1A 133 6.12e+01 d.10.1.3 99140 1hleA 345 6.12e+01 1ovaA e.1.1.1 42618 1b6rA 355 6.16e+01 1b6rA b.84.2.1,c.30.1.1,d.142.1.2 28241,31648,41493 1sbzA 197 6.17e+01 1w2xA 758 6.19e+01 c.14.1.4,c.14.1.4 109134,109135 2ausB 60 6.34e+01 1bx1A 314 6.39e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1g2qA 187 6.44e+01 c.61.1.1 65117 1yn4A 99 6.45e+01 1y4wA 518 6.56e+01 1m7sA 484 6.57e+01 e.5.1.1 74574 2apr 325 6.64e+01 2er7E b.50.1.2 26819 1tocR 120 6.69e+01 1tocR g.8.1.2,g.8.1.2 44558,44559 1tvdA 116 6.73e+01 1tvdA b.1.1.1 20650 1bj7 156 6.74e+01 1bj7 b.60.1.1 27113 1w8oA 601 6.77e+01 1eljA 381 6.77e+01 4mbp c.94.1.1 35791 1wloA 136 6.79e+01 2bvfA 459 6.79e+01 1w96A 554 6.89e+01 1tuaA 191 6.96e+01 d.51.1.1,d.51.1.1 107321,107322 1dbxA 158 6.99e+01 1dbuA d.116.1.1 40928 1ik9A 213 7.09e+01 b.59.1.1,h.1.11.1 66176,66177 1cjwA 166 7.15e+01 1cjwA d.108.1.1 40818 2bkrA 212 7.18e+01 1nqzA 194 7.35e+01 d.113.1.1 86077 1fnd 314 7.35e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1gt1A 159 7.38e+01 b.60.1.1 90515 1xtmA 175 7.44e+01 1amx 180 7.47e+01 1amx b.2.3.1 22410 1b7yB 785 7.47e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 1rgxA 114 7.58e+01 g.77.1.1 104932 2gp5A 349 7.59e+01 3tdt 274 7.60e+01 3tdt b.81.1.2 28053 1gweA 503 7.60e+01 e.5.1.1 70667 1xewY 172 7.63e+01 1lh0A 213 7.63e+01 c.61.1.1 73896 1xzoA 174 7.63e+01 2d0iA 333 7.79e+01 2bghA 421 7.80e+01 1vg0A 650 7.89e+01 c.3.1.3,d.16.1.6 108596,108597 1gc0A 398 7.91e+01 c.67.1.3 70168 1ru4A 400 7.95e+01 b.80.1.9 97836 1bcpF 99 8.14e+01 1prtF b.40.2.1 25142 1ga3A 113 8.16e+01 1ga3A a.26.1.2 60411 1nnvA 110 8.16e+01 d.17.7.1 92012 1j7xA 302 8.26e+01 c.14.1.2 66425 1xs1A 193 8.28e+01 2bpsA 81 8.29e+01 1dcoA 104 8.30e+01 1dcpA d.74.1.1 39680 1s5rA 23 8.31e+01 j.114.1.1 105280 2ervA 150 8.35e+01 1a32 88 8.37e+01 1a32 a.16.1.2 16384 2bh8A 101 8.38e+01 1o7dE 126 8.42e+01 2ffcA 353 8.42e+01 1q5xA 161 8.43e+01 c.8.7.1 95947 1dosA 358 8.48e+01 1dosA c.1.10.2 29175 1uw4A 91 8.55e+01 d.58.7.4 100071 1xcbA 211 8.62e+01 a.4.5.38,c.2.1.12 109552,109553 1s0aA 429 8.65e+01 c.67.1.4 98263 1go3F 107 8.74e+01 a.60.8.2 65407 1x54A 434 8.79e+01 2gu2A 312 8.83e+01 1qhlA 227 8.96e+01 1qhlA c.37.1.12 32382 1bkjA 240 8.97e+01 1bkjA d.90.1.1 40243