# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rtfB 252 7.84e-01 5ptp 1tu1A 148 9.45e-01 d.107.1.3 107316 1lf2A 331 1.99e+00 b.50.1.2 77914 2bjuA 453 2.14e+00 1ebfA 358 2.43e+00 1ebuA c.2.1.3,d.81.1.2 30033,39948 1fjrA 195 2.72e+00 1fjrA b.102.1.1 59855 1mwwA 128 3.44e+00 d.80.1.4 91483 2b18A 164 5.08e+00 1d8hA 311 5.24e+00 1d8iA d.63.1.1 39544 1f5mA 180 6.12e+00 1f5mB d.110.2.1 40895 2b5oA 402 6.75e+00 1ltqA 301 7.37e+00 c.108.1.9,c.37.1.1 78208,78209 1ly1A 181 9.07e+00 c.37.1.1 74334 1cl8A 276 9.39e+00 1ckqA c.52.1.1 33230 1fnd 314 1.02e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1fnc 314 1.04e+01 1fnc b.43.4.2,c.25.1.1 25627,31517 1bx1A 314 1.05e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1dp4A 435 1.10e+01 1dp4A c.93.1.1 35710 1fxoA 293 1.20e+01 1g0rA c.68.1.6 34524 1s31A 273 1.21e+01 1o0sA 605 1.23e+01 c.2.1.7,c.58.1.3 86540,86541 3proC 166 1.23e+01 3proC d.52.1.1,d.52.1.1 38812,38813 1que 303 1.30e+01 1fnc b.43.4.2,c.25.1.1 25647,31537 2bsaA 303 1.34e+01 1w34A 304 1.34e+01 1b9wA 89 1.37e+01 1b9wA g.3.11.4,g.3.11.4 44334,44335 1ogiA 303 1.41e+01 b.43.4.2,c.25.1.1 92914,92915 1gky 187 1.46e+01 1gky c.37.1.1 31839 1go2A 304 1.47e+01 b.43.4.2,c.25.1.1 76243,76244 1ex7A 186 1.48e+01 1gky c.37.1.1 59537 1prxA 224 1.48e+01 1prxA c.47.1.10 33076 1vj2A 126 1.51e+01 b.82.1.10 100796 1xa1A 255 1.76e+01 e.3.1.1 109529 1qxrA 189 1.91e+01 b.82.1.7 96552 1dkzA 219 1.92e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 1jltB 122 1.97e+01 a.133.1.2 66868 1x82A 190 2.00e+01 1g55A 343 2.13e+01 1g55A c.66.1.26 34247 1y8oB 128 2.18e+01 1g2qA 187 2.24e+01 c.61.1.1 65117 1kdj 102 2.30e+01 1plc b.6.1.1 22864 1cjwA 166 2.33e+01 1cjwA d.108.1.1 40818 1vj0A 380 2.36e+01 b.35.1.2,c.2.1.1 100786,100787 1c8zA 265 2.46e+01 1c8zA d.23.1.1 38375 1wxxA 382 2.51e+01 2b1xA 470 2.56e+01 2cyeA 133 2.56e+01 1udc 338 2.64e+01 1xel c.2.1.2 29785 1xel 338 2.64e+01 1xel c.2.1.2 29786 1xl3C 92 2.77e+01 2cwsA 237 2.79e+01 2bokA 241 2.79e+01 1gdvA 85 2.90e+01 1ctj a.3.1.1 60458 1ei1A 391 3.05e+01 1aj6 d.14.1.3,d.122.1.2 37570,41104 2blkA 122 3.14e+01 1mrzA 293 3.18e+01 b.43.5.1,c.26.1.3 91452,91453 1w2lA 99 3.35e+01 1e79H 146 3.35e+01 1e79H a.2.10.1,b.93.1.1 15721,28438 1xkzA 255 3.36e+01 1xg8A 111 3.44e+01 1t8sA 484 3.47e+01 c.56.2.1 106679 1xwtA 405 3.48e+01 1xw2A 405 3.50e+01 1h12A 405 3.53e+01 a.102.1.2 83447 1xewY 172 3.61e+01 1q9jA 422 3.63e+01 c.43.1.2,c.43.1.2 104590,104591 2apr 325 3.64e+01 2er7E b.50.1.2 26819 1dmhA 311 3.65e+01 1dmhA b.3.6.1 22633 1m7vA 363 3.68e+01 d.174.1.1 78748 1aq0A 306 3.69e+01 1aq0A c.1.8.3 28842 1y5eA 169 3.69e+01 1ryoA 327 3.94e+01 c.94.1.2 98108 1k4tA 592 3.95e+01 a.2.8.1,d.163.1.2,e.15.1.1 77263,77264,77265 2b20A 403 4.04e+01 1aokB 122 4.05e+01 1poa a.133.1.2 19561 1a8e 329 4.10e+01 1cb6A c.94.1.2 35888 2bkqA 212 4.16e+01 1sxvA 172 4.19e+01 1xt9A 212 4.25e+01 3aprE 325 4.32e+01 2er7E b.50.1.2 26820 1y7rA 133 4.40e+01 1iw7C 1119 4.44e+01 e.29.1.1 71474 1vm6A 228 4.51e+01 c.2.1.3,d.81.1.3 108876,108877 1u1zA 168 4.56e+01 d.38.1.6 107602 1bb9 115 4.56e+01 1bb9 b.34.2.1 24554 3sil 379 4.57e+01 3sil b.68.1.1 27542 1twuA 139 4.59e+01 d.32.1.8 107413 2cz2A 223 4.64e+01 1t46A 313 4.67e+01 d.144.1.7 106397 1zj8A 566 4.71e+01 1tvdA 116 4.85e+01 1tvdA b.1.1.1 20650 1vh4A 435 5.00e+01 b.80.6.1 100640 2axyA 73 5.03e+01 1tvgA 153 5.05e+01 1stzA 338 5.07e+01 a.4.5.51,d.110.2.3 106009,106010 2as0A 396 5.14e+01 1kao 167 5.21e+01 1ctqA c.37.1.8 32014 2gdnA 267 5.23e+01 1g2oA 268 5.51e+01 1b8oA c.56.2.1 60228 1xneA 113 5.54e+01 1yewA 382 5.55e+01 1f28A 297 5.55e+01 1bkpA d.117.1.1 59608 2b4wA 315 5.63e+01 1o7qA 289 5.68e+01 c.68.1.9 92626 1g6oA 330 5.71e+01 1g6oA c.37.1.11 32430 1sh8A 154 5.75e+01 d.38.1.5 105549 1o0iA 138 6.31e+01 d.38.1.5 86532 1zgoA 223 6.32e+01 1pfzA 380 6.38e+01 1smrA b.50.1.2 26881 2bkrA 212 6.42e+01 1fadA 99 6.44e+01 1fadA a.77.1.2 18428 1g2lA 235 6.81e+01 b.47.1.2 65112 1m0wA 491 6.87e+01 c.30.1.4,d.142.1.6 78363,78364 1mup 166 6.87e+01 1mup b.60.1.1 27133 1hleA 345 6.90e+01 1ovaA e.1.1.1 42618 1fjsA 234 6.93e+01 1ucyE b.47.1.2 26336 1res 43 7.01e+01 1ret a.4.1.2 16023 1tqnA 486 7.06e+01 a.104.1.1 107238 2f1lA 187 7.24e+01 1jv4A 162 7.29e+01 b.60.1.1 67343 1f3aA 222 7.35e+01 1pgtA a.45.1.1,c.47.1.5 17701,32995 2d4rA 147 7.41e+01 1uyrA 737 7.41e+01 c.14.1.4,c.14.1.4 100188,100189 8prn 289 7.46e+01 3prn f.4.3.1 43767 1qy1A 174 7.47e+01 b.60.1.1 96568 1zndA 174 7.54e+01 1i05A 180 7.62e+01 1mup b.60.1.1 27130 1i06A 180 7.65e+01 1mup b.60.1.1 27131 1fu1A 203 7.66e+01 1fu1B b.59.1.1,h.1.11.1 27076,45630 1h5rA 293 7.69e+01 c.68.1.6 65623 1q15A 503 7.74e+01 c.26.2.1,d.153.1.1 95538,95539 2bvfA 459 7.74e+01 1j8bA 112 7.74e+01 d.222.1.1 77101 1xhbA 472 7.79e+01 1b65A 375 8.06e+01 1b65A d.154.1.1 42020 1xffA 240 8.12e+01 d.153.1.1 109580 1eljA 381 8.13e+01 4mbp c.94.1.1 35791 1eo9B 241 8.14e+01 3pchM b.3.6.1 22826 1k7kA 221 8.26e+01 c.51.4.1 72104 1kutA 230 8.34e+01 d.143.1.1 73017 1tmxA 293 8.36e+01 1gppA 237 8.48e+01 b.86.1.2 76262 1pyaB 228 8.49e+01 1pyaB 2b6nA 278 8.64e+01 1ijaA 148 8.65e+01 1ijaA b.100.1.1 62484 1jae 471 8.72e+01 1smd b.71.1.1,c.1.8.1 27773,28760 1mp4A 292 8.75e+01 c.68.1.6 79376 1wloA 136 8.78e+01 1vl2A 421 8.79e+01 c.26.2.1,d.210.1.1 108708,108709 1rq2A 382 8.83e+01 c.32.1.1,d.79.2.1 105048,105049 2bkyA 97 8.92e+01 1xtmA 175 8.98e+01