# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gky 187 1.52e+00 1gky c.37.1.1 31839 1ex7A 186 1.62e+00 1gky c.37.1.1 59537 1fjrA 195 2.04e+00 1fjrA b.102.1.1 59855 1uch 230 2.54e+00 1uch d.3.1.6 37129 1ifrA 121 2.54e+00 b.1.16.1 71203 1cjxA 357 2.75e+00 1cjxA d.32.1.3,d.32.1.3 38516,38517 1xd3A 230 2.77e+00 1mrzA 293 4.42e+00 b.43.5.1,c.26.1.3 91452,91453 1o0sA 605 5.24e+00 c.2.1.7,c.58.1.3 86540,86541 1jfzA 154 6.46e+00 a.149.1.1 66655 1fdr 248 7.58e+00 1fdr b.43.4.2,c.25.1.1 25653,31543 2ez6A 221 8.16e+00 1bb9 115 8.57e+00 1bb9 b.34.2.1 24554 1ltqA 301 9.43e+00 c.108.1.9,c.37.1.1 78208,78209 1y8oB 128 1.04e+01 2f2eA 146 1.04e+01 1ly1A 181 1.17e+01 c.37.1.1 74334 1o59A 355 1.22e+01 b.18.1.22,b.18.1.22 92495,92496 1aokB 122 1.32e+01 1poa a.133.1.2 19561 1vj2A 126 1.49e+01 b.82.1.10 100796 1sr4B 261 1.51e+01 d.151.1.1 105949 1fsu 492 1.59e+01 1auk c.76.1.2 35032 1wmsA 177 1.61e+01 c.37.1.8 109414 1b65A 375 1.70e+01 1b65A d.154.1.1 42020 1xtlA 175 1.72e+01 2eboA 74 1.73e+01 2eboA h.3.2.1 45754 1x6iA 91 1.86e+01 1jltB 122 1.87e+01 a.133.1.2 66868 1ywnA 316 1.88e+01 1s4iA 175 1.88e+01 1ycdA 243 1.97e+01 1s8fA 177 2.12e+01 c.37.1.8 105370 1f06A 320 2.19e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 1xfrA 128 2.21e+01 1xtmA 175 2.26e+01 1xo7A 166 2.29e+01 1fxoA 293 2.32e+01 1g0rA c.68.1.6 34524 2a90A 240 2.42e+01 1jxcA 68 2.67e+01 g.3.7.5 77201 1rlw 126 2.67e+01 1rlw b.7.1.1 23177 1soxA 466 2.70e+01 1soxA b.1.18.6,d.120.1.1,d.176.1.1 21947,41090,42563 2a9dA 372 2.71e+01 1qxrA 189 2.88e+01 b.82.1.7 96552 1x9gA 200 2.88e+01 c.33.1.3 109527 1mzgA 146 2.89e+01 d.224.1.1 79696 1x82A 190 3.25e+01 1dy9A 187 3.33e+01 1jxpA b.47.1.3 26400 1f5mA 180 3.36e+01 1f5mB d.110.2.1 40895 1t0fC 54 3.48e+01 1yzvA 204 3.69e+01 2bsaA 303 3.73e+01 2cfxA 144 3.75e+01 1qorA 327 3.90e+01 1qorA b.35.1.2,c.2.1.1 24766,29782 1j9lA 247 4.12e+01 c.106.1.1 62762 1c8zA 265 4.14e+01 1c8zA d.23.1.1 38375 2f1rA 171 4.15e+01 1o6dA 163 4.25e+01 c.116.1.3 92567 1xl3C 92 4.27e+01 1xhbA 472 4.27e+01 1zn8A 180 4.29e+01 1ocxA 182 4.34e+01 b.81.1.3 86814 1tuzA 118 4.42e+01 1go2A 304 4.50e+01 b.43.4.2,c.25.1.1 76243,76244 1lst 239 4.51e+01 1lst c.94.1.1 35755 1binB 143 4.56e+01 2gdm a.1.1.2 15232 1tzvA 142 4.56e+01 a.79.1.1 107526 1w34A 304 4.58e+01 1fmb 104 4.66e+01 1fmb b.50.1.1 26777 1wlpB 138 4.79e+01 1d8hA 311 4.82e+01 1d8iA d.63.1.1 39544 1ikoP 178 4.88e+01 b.6.1.5 71243 1bx1A 314 4.89e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1b6rA 355 4.97e+01 1b6rA b.84.2.1,c.30.1.1,d.142.1.2 28241,31648,41493 2esnA 310 5.12e+01 1dqeA 137 5.13e+01 1dqeA a.39.2.1 17388 1v8fA 276 5.15e+01 c.26.1.4 100503 1mwwA 128 5.20e+01 d.80.1.4 91483 3sil 379 5.22e+01 3sil b.68.1.1 27542 1ny9A 143 5.23e+01 a.181.1.1 86401 1gcqC 70 5.32e+01 1gcpA b.34.2.1 60436 1yn4A 99 5.33e+01 1bdb 277 5.34e+01 1bdb c.2.1.2 29874 2aw5A 541 5.70e+01 1v74B 87 5.70e+01 a.24.20.1 100443 1s31A 273 5.71e+01 1mwmA 320 5.72e+01 c.55.1.1,c.55.1.1 79580,79581 1kdj 102 6.02e+01 1plc b.6.1.1 22864 1uuzA 137 6.05e+01 d.233.1.1 100024 1vbkA 307 6.21e+01 1fnc 314 6.35e+01 1fnc b.43.4.2,c.25.1.1 25627,31517 1fuiA 591 6.49e+01 1fuiA b.43.2.1,c.85.1.1 25674,35444 1que 303 6.68e+01 1fnc b.43.4.2,c.25.1.1 25647,31537 1ohpA 125 6.74e+01 1a41 234 6.74e+01 1a41 d.163.1.2 42174 1fnd 314 6.74e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1je6A 275 6.83e+01 b.1.1.2,d.19.1.1 71638,71639 1ryp1 222 6.97e+01 1ryp1 2b5oA 402 7.03e+01 1zxuA 217 7.19e+01 1wfuA 120 7.39e+01 1qwvA 142 7.40e+01 a.39.2.1 96506 1vpqA 273 7.53e+01 1ufyA 122 7.55e+01 d.79.1.2 88489 1jmcA 246 7.67e+01 1jmcA b.40.4.3,b.40.4.3 25300,25301 2cyeA 133 8.03e+01 1vdnA 162 8.07e+01 1wmuA 141 8.11e+01 a.1.1.2 109416 1f60A 458 8.33e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1afwA 393 8.40e+01 1afwA c.95.1.1,c.95.1.1 35900,35901 1g73C 121 8.42e+01 1g3fA g.52.1.1 45375 1qgiA 259 8.64e+01 1qgiA d.2.1.7 37001 1dp4A 435 8.76e+01 1dp4A c.93.1.1 35710 1dixA 208 8.82e+01 1bk7A d.124.1.1 41122 1ocvA 125 8.89e+01 d.17.4.3 86810 1rkuA 206 8.90e+01 c.108.1.11 97627 1xqiA 195 8.95e+01 1iwmA 186 8.98e+01 b.125.1.2 83758