# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1uch 230 2.50e+00 1uch d.3.1.6 37129 1xd3A 230 3.37e+00 1ikoP 178 4.33e+00 b.6.1.5 71243 2eboA 74 5.73e+00 2eboA h.3.2.1 45754 1ifrA 121 8.80e+00 b.1.16.1 71203 1qwvA 142 9.44e+00 a.39.2.1 96506 1hlb 158 1.02e+01 1hlb a.1.1.2 15625 1xfrA 128 1.25e+01 1je6A 275 1.29e+01 b.1.1.2,d.19.1.1 71638,71639 1f06A 320 1.29e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 1vj2A 126 1.32e+01 b.82.1.10 100796 1binB 143 1.38e+01 2gdm a.1.1.2 15232 1ex7A 186 1.53e+01 1gky c.37.1.1 59537 2cfxA 144 1.53e+01 1gky 187 1.57e+01 1gky c.37.1.1 31839 1s3jA 155 1.75e+01 a.4.5.28 98437 1ly1A 181 1.75e+01 c.37.1.1 74334 1ltqA 301 1.78e+01 c.108.1.9,c.37.1.1 78208,78209 1y8oB 128 1.88e+01 1jxcA 68 2.01e+01 g.3.7.5 77201 1dqeA 137 2.02e+01 1dqeA a.39.2.1 17388 1yn4A 99 2.34e+01 1aokB 122 2.55e+01 1poa a.133.1.2 19561 1vbkA 307 2.63e+01 1he7A 126 2.67e+01 1wwcA b.1.1.4 60970 1a41 234 2.69e+01 1a41 d.163.1.2 42174 1xhbA 472 3.04e+01 1dm9A 133 3.12e+01 1dm9A d.66.1.3 39560 1xtlA 175 3.15e+01 1jfzA 154 3.27e+01 a.149.1.1 66655 1jltB 122 3.31e+01 a.133.1.2 66868 1x6iA 91 3.37e+01 1s4iA 175 3.39e+01 1dxrH 258 3.42e+01 6prcH b.41.1.1,f.23.10.1 25456,43433 1x9gA 200 3.56e+01 c.33.1.3 109527 1xtmA 175 3.69e+01 2ez6A 221 3.94e+01 1zn8A 180 3.97e+01 1fdr 248 4.03e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1fftB 315 4.13e+01 1cyx b.6.1.2,f.17.2.1 23025,43628 1lj2A 110 4.34e+01 h.1.13.2 73926 1mwwA 128 4.39e+01 d.80.1.4 91483 1wwbX 103 4.46e+01 1wwcA b.1.1.4 21777 1t0fC 54 4.58e+01 2c52B 59 4.80e+01 1fp1D 372 4.89e+01 1fpqA a.4.5.29,c.66.1.12 59939,59940 1fjrA 195 5.08e+01 1fjrA b.102.1.1 59855 1wmsA 177 5.19e+01 c.37.1.8 109414 1o59A 355 5.23e+01 b.18.1.22,b.18.1.22 92495,92496 1twuA 139 5.24e+01 d.32.1.8 107413 1zvdA 380 5.44e+01 1pyaB 228 5.52e+01 1pyaB 2rslA 140 5.72e+01 2rslA c.53.1.1 33345 1rwyA 109 6.09e+01 a.39.1.4 98002 1tu1A 148 6.15e+01 d.107.1.3 107316 1o75A 415 6.46e+01 b.1.20.1,b.1.20.1,b.120.1.1 81117,81118,81119 1o0sA 605 6.59e+01 c.2.1.7,c.58.1.3 86540,86541 2f1rA 171 6.68e+01 2auwA 170 6.71e+01 2azeA 155 6.71e+01 1yemA 179 6.75e+01 1wdgA 94 6.77e+01 h.3.3.1 109248 1lnwA 147 6.88e+01 a.4.5.28 78104 1bh9B 89 6.92e+01 1bh9B a.22.1.3 16485 1cjxA 357 6.95e+01 1cjxA d.32.1.3,d.32.1.3 38516,38517 1gdvA 85 7.05e+01 1ctj a.3.1.1 60458 1m0dA 138 7.47e+01 c.52.1.17 74354 1k2xA 177 7.64e+01 d.153.1.5 90929 1vl7A 157 7.75e+01 b.45.1.1 108732 1i2mA 216 7.94e+01 1byuA c.37.1.8 61568 1bdb 277 7.94e+01 1bdb c.2.1.2 29874 1hpi 71 8.08e+01 1ckuA g.35.1.1 44995 1xvjA 109 8.31e+01 1fzrA 138 8.38e+01 1fzrA c.52.1.17 33336 1fjgI 128 8.39e+01 1fjfI d.14.1.1 37559 1d8hA 311 8.44e+01 1d8iA d.63.1.1 39544 1s8fA 177 8.55e+01 c.37.1.8 105370 1klo 162 8.65e+01 1klo g.3.11.2,g.3.11.2,g.3.11.2 44326,44327,44328 1tuzA 118 8.66e+01 1l0lG 81 8.95e+01 f.23.13.1 84493 1nvpD 108 8.97e+01 a.32.1.1,b.56.1.1 92213,92214