mkdir -p decoys rm decoys/scwrl-predictions.under rm: cannot remove `decoys/scwrl-predictions.under': No such file or directory make: [decoys/scwrl-predictions.under] Error 1 (ignored) cd decoys; shopt -s nullglob ; for x in predictions/* ; do \ echo ReadConformPDB $x >> scwrl-predictions.under ; \ y=${x%.pdb.gz} ; \ z=${y#predictions/} ; \ echo NameConform $z >> scwrl-predictions.under ; \ echo SCWRLConform >> scwrl-predictions.under ; \ echo NameConform $z-scwrl >> scwrl-predictions.under ; \ echo PrintConformPDB predictions-scwrl/$z-scwrl \ >> scwrl-predictions.under ; \ done chgrp protein decoys/scwrl-predictions.under chmod g+w decoys/scwrl-predictions.under mkdir -p decoys/predictions-scwrl chgrp protein decoys/predictions-scwrl chmod g+w decoys/predictions-scwrl umask 002; \ sed -e s/XXX0000/T0284/ -e s/START_COL/1/ \ -e s/_domain// \ -e s/read-pdb/scwrl-predictions/ \ -e s/REAL_PDB/1oqfA/ \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/read-decoys.under \ | nice -2 /projects/compbio/papers/protein-structure/MQA-tau/source_code/karplus/undertaker/undertaker # command:# Seed set to 1216257910 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 8101 examples # computed average trans backbone unit before proline from 332 examples # computed average cis backbone unit from 20 examples # trans (non-proline) backbone unit: # CA= -2.2101 1.0129 -0.0033 # O= -0.1508 2.2440 0.0016 # C= -0.6897 1.1364 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4583 -0.0000 -0.0000 # cis backbone unit: # CA= -0.1438 2.4522 0.0007 # O= -2.0283 0.9702 0.0005 # C= -0.8017 1.0759 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4664 -0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2110 1.0636 -0.0014 # O= -0.1234 2.2469 0.0075 # C= -0.6877 1.1518 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4665 0.0000 0.0000 # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 111048 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 685 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 6.649 sec, elapsed time= 6.692 sec. # command:# Prefix for input files set to # command:# Making conformation for sequence T0284 numbered 1 through 287 Created new target T0284 from T0284.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:1oqfA expands to /projects/compbio/data/pdb/1oqf.pdb.gz 1oqfA: Read 290 residues and 2206 atoms. # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # command:# Saving current conformation as real # command:# Prefix for input files set to decoys/ # command:# Prefix for output files set to decoys/ # command:# reading script from file scwrl-predictions.under # ReadConformPDB reading from PDB file predictions/RT0284TS239_1 looking for model 1 WARNING: atom 1 has residue number 1 < previous residue 287 in predictions/RT0284TS239_1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation RT0284TS239_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_38546648.pdb -s /var/tmp/to_scwrl_38546648.seq -o /var/tmp/from_scwrl_38546648.pdb > /var/tmp/scwrl_38546648.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_38546648.pdb # choosing archetypes in rotamer library # conformation set from SCWRL output # naming current conformation RT0284TS239_1-scwrl # ReadConformPDB reading from PDB file predictions/RT0284TS239_3 looking for model 1 WARNING: atom 1 has residue number 1 < previous residue 287 in predictions/RT0284TS239_3 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation RT0284TS239_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1580683808.pdb -s /var/tmp/to_scwrl_1580683808.seq -o /var/tmp/from_scwrl_1580683808.pdb > /var/tmp/scwrl_1580683808.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1580683808.pdb # conformation set from SCWRL output # naming current conformation RT0284TS239_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL044_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL044_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1354218859.pdb -s /var/tmp/to_scwrl_1354218859.seq -o /var/tmp/from_scwrl_1354218859.pdb > /var/tmp/scwrl_1354218859.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1354218859.pdb # conformation set from SCWRL output # naming current conformation T0284AL044_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL044_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL044_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1513996592.pdb -s /var/tmp/to_scwrl_1513996592.seq -o /var/tmp/from_scwrl_1513996592.pdb > /var/tmp/scwrl_1513996592.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1513996592.pdb # conformation set from SCWRL output # naming current conformation T0284AL044_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL044_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL044_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1582055042.pdb -s /var/tmp/to_scwrl_1582055042.seq -o /var/tmp/from_scwrl_1582055042.pdb > /var/tmp/scwrl_1582055042.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1582055042.pdb # conformation set from SCWRL output # naming current conformation T0284AL044_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL044_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL044_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1491692030.pdb -s /var/tmp/to_scwrl_1491692030.seq -o /var/tmp/from_scwrl_1491692030.pdb > /var/tmp/scwrl_1491692030.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1491692030.pdb # conformation set from SCWRL output # naming current conformation T0284AL044_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL044_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL044_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_423840305.pdb -s /var/tmp/to_scwrl_423840305.seq -o /var/tmp/from_scwrl_423840305.pdb > /var/tmp/scwrl_423840305.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_423840305.pdb # conformation set from SCWRL output # naming current conformation T0284AL044_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL170_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL170_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_812137586.pdb -s /var/tmp/to_scwrl_812137586.seq -o /var/tmp/from_scwrl_812137586.pdb > /var/tmp/scwrl_812137586.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_812137586.pdb # conformation set from SCWRL output # naming current conformation T0284AL170_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL170_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL170_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_795116010.pdb -s /var/tmp/to_scwrl_795116010.seq -o /var/tmp/from_scwrl_795116010.pdb > /var/tmp/scwrl_795116010.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_795116010.pdb # conformation set from SCWRL output # naming current conformation T0284AL170_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL170_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL170_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1053688975.pdb -s /var/tmp/to_scwrl_1053688975.seq -o /var/tmp/from_scwrl_1053688975.pdb > /var/tmp/scwrl_1053688975.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1053688975.pdb # conformation set from SCWRL output # naming current conformation T0284AL170_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL170_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL170_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_921510018.pdb -s /var/tmp/to_scwrl_921510018.seq -o /var/tmp/from_scwrl_921510018.pdb > /var/tmp/scwrl_921510018.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_921510018.pdb # conformation set from SCWRL output # naming current conformation T0284AL170_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL170_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL170_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_21953275.pdb -s /var/tmp/to_scwrl_21953275.seq -o /var/tmp/from_scwrl_21953275.pdb > /var/tmp/scwrl_21953275.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_21953275.pdb # conformation set from SCWRL output # naming current conformation T0284AL170_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL242_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL242_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1771363962.pdb -s /var/tmp/to_scwrl_1771363962.seq -o /var/tmp/from_scwrl_1771363962.pdb > /var/tmp/scwrl_1771363962.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1771363962.pdb # conformation set from SCWRL output # naming current conformation T0284AL242_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL242_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL242_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_81773654.pdb -s /var/tmp/to_scwrl_81773654.seq -o /var/tmp/from_scwrl_81773654.pdb > /var/tmp/scwrl_81773654.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_81773654.pdb # conformation set from SCWRL output # naming current conformation T0284AL242_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL242_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL242_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1864982953.pdb -s /var/tmp/to_scwrl_1864982953.seq -o /var/tmp/from_scwrl_1864982953.pdb > /var/tmp/scwrl_1864982953.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1864982953.pdb # conformation set from SCWRL output # naming current conformation T0284AL242_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL242_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL242_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1276624422.pdb -s /var/tmp/to_scwrl_1276624422.seq -o /var/tmp/from_scwrl_1276624422.pdb > /var/tmp/scwrl_1276624422.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1276624422.pdb # conformation set from SCWRL output # naming current conformation T0284AL242_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL242_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL242_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1820187705.pdb -s /var/tmp/to_scwrl_1820187705.seq -o /var/tmp/from_scwrl_1820187705.pdb > /var/tmp/scwrl_1820187705.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1820187705.pdb # conformation set from SCWRL output # naming current conformation T0284AL242_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL243_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL243_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1115971419.pdb -s /var/tmp/to_scwrl_1115971419.seq -o /var/tmp/from_scwrl_1115971419.pdb > /var/tmp/scwrl_1115971419.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1115971419.pdb # conformation set from SCWRL output # naming current conformation T0284AL243_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL243_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL243_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1966537951.pdb -s /var/tmp/to_scwrl_1966537951.seq -o /var/tmp/from_scwrl_1966537951.pdb > /var/tmp/scwrl_1966537951.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1966537951.pdb # conformation set from SCWRL output # naming current conformation T0284AL243_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL243_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL243_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_2102099050.pdb -s /var/tmp/to_scwrl_2102099050.seq -o /var/tmp/from_scwrl_2102099050.pdb > /var/tmp/scwrl_2102099050.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2102099050.pdb # conformation set from SCWRL output # naming current conformation T0284AL243_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL243_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL243_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_53692128.pdb -s /var/tmp/to_scwrl_53692128.seq -o /var/tmp/from_scwrl_53692128.pdb > /var/tmp/scwrl_53692128.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_53692128.pdb # conformation set from SCWRL output # naming current conformation T0284AL243_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL257_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL257_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1105924777.pdb -s /var/tmp/to_scwrl_1105924777.seq -o /var/tmp/from_scwrl_1105924777.pdb > /var/tmp/scwrl_1105924777.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1105924777.pdb # conformation set from SCWRL output # naming current conformation T0284AL257_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL257_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL257_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_858396464.pdb -s /var/tmp/to_scwrl_858396464.seq -o /var/tmp/from_scwrl_858396464.pdb > /var/tmp/scwrl_858396464.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_858396464.pdb # conformation set from SCWRL output # naming current conformation T0284AL257_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL257_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL257_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_715356419.pdb -s /var/tmp/to_scwrl_715356419.seq -o /var/tmp/from_scwrl_715356419.pdb > /var/tmp/scwrl_715356419.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_715356419.pdb # conformation set from SCWRL output # naming current conformation T0284AL257_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL257_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284AL257_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_2031971227.pdb -s /var/tmp/to_scwrl_2031971227.seq -o /var/tmp/from_scwrl_2031971227.pdb > /var/tmp/scwrl_2031971227.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2031971227.pdb # conformation set from SCWRL output # naming current conformation T0284AL257_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL257_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL257_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_155372270.pdb -s /var/tmp/to_scwrl_155372270.seq -o /var/tmp/from_scwrl_155372270.pdb > /var/tmp/scwrl_155372270.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_155372270.pdb # conformation set from SCWRL output # naming current conformation T0284AL257_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL316_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL316_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1548835334.pdb -s /var/tmp/to_scwrl_1548835334.seq -o /var/tmp/from_scwrl_1548835334.pdb > /var/tmp/scwrl_1548835334.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1548835334.pdb # conformation set from SCWRL output # naming current conformation T0284AL316_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL316_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL316_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_914927151.pdb -s /var/tmp/to_scwrl_914927151.seq -o /var/tmp/from_scwrl_914927151.pdb > /var/tmp/scwrl_914927151.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_914927151.pdb # conformation set from SCWRL output # naming current conformation T0284AL316_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL316_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284AL316_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_137486145.pdb -s /var/tmp/to_scwrl_137486145.seq -o /var/tmp/from_scwrl_137486145.pdb > /var/tmp/scwrl_137486145.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_137486145.pdb # conformation set from SCWRL output # naming current conformation T0284AL316_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL316_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL316_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_501793870.pdb -s /var/tmp/to_scwrl_501793870.seq -o /var/tmp/from_scwrl_501793870.pdb > /var/tmp/scwrl_501793870.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_501793870.pdb # conformation set from SCWRL output # naming current conformation T0284AL316_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL316_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL316_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1120198485.pdb -s /var/tmp/to_scwrl_1120198485.seq -o /var/tmp/from_scwrl_1120198485.pdb > /var/tmp/scwrl_1120198485.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1120198485.pdb # conformation set from SCWRL output # naming current conformation T0284AL316_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL380_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL380_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_176032793.pdb -s /var/tmp/to_scwrl_176032793.seq -o /var/tmp/from_scwrl_176032793.pdb > /var/tmp/scwrl_176032793.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_176032793.pdb # conformation set from SCWRL output # naming current conformation T0284AL380_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL380_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL380_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_2082477678.pdb -s /var/tmp/to_scwrl_2082477678.seq -o /var/tmp/from_scwrl_2082477678.pdb > /var/tmp/scwrl_2082477678.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2082477678.pdb # conformation set from SCWRL output # naming current conformation T0284AL380_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL380_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL380_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_326933698.pdb -s /var/tmp/to_scwrl_326933698.seq -o /var/tmp/from_scwrl_326933698.pdb > /var/tmp/scwrl_326933698.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_326933698.pdb # conformation set from SCWRL output # naming current conformation T0284AL380_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL380_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL380_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1690029385.pdb -s /var/tmp/to_scwrl_1690029385.seq -o /var/tmp/from_scwrl_1690029385.pdb > /var/tmp/scwrl_1690029385.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1690029385.pdb # conformation set from SCWRL output # naming current conformation T0284AL380_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL380_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL380_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1517049073.pdb -s /var/tmp/to_scwrl_1517049073.seq -o /var/tmp/from_scwrl_1517049073.pdb > /var/tmp/scwrl_1517049073.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1517049073.pdb # conformation set from SCWRL output # naming current conformation T0284AL380_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL381_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL381_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1818625729.pdb -s /var/tmp/to_scwrl_1818625729.seq -o /var/tmp/from_scwrl_1818625729.pdb > /var/tmp/scwrl_1818625729.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1818625729.pdb # conformation set from SCWRL output # naming current conformation T0284AL381_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL381_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL381_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_2113869691.pdb -s /var/tmp/to_scwrl_2113869691.seq -o /var/tmp/from_scwrl_2113869691.pdb > /var/tmp/scwrl_2113869691.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2113869691.pdb # conformation set from SCWRL output # naming current conformation T0284AL381_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL381_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL381_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_181703012.pdb -s /var/tmp/to_scwrl_181703012.seq -o /var/tmp/from_scwrl_181703012.pdb > /var/tmp/scwrl_181703012.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_181703012.pdb # conformation set from SCWRL output # naming current conformation T0284AL381_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL381_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL381_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_466258092.pdb -s /var/tmp/to_scwrl_466258092.seq -o /var/tmp/from_scwrl_466258092.pdb > /var/tmp/scwrl_466258092.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_466258092.pdb # conformation set from SCWRL output # naming current conformation T0284AL381_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL381_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL381_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1020075019.pdb -s /var/tmp/to_scwrl_1020075019.seq -o /var/tmp/from_scwrl_1020075019.pdb > /var/tmp/scwrl_1020075019.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1020075019.pdb # conformation set from SCWRL output # naming current conformation T0284AL381_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL556_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL556_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1103213029.pdb -s /var/tmp/to_scwrl_1103213029.seq -o /var/tmp/from_scwrl_1103213029.pdb > /var/tmp/scwrl_1103213029.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1103213029.pdb # conformation set from SCWRL output # naming current conformation T0284AL556_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL556_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL556_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_488211367.pdb -s /var/tmp/to_scwrl_488211367.seq -o /var/tmp/from_scwrl_488211367.pdb > /var/tmp/scwrl_488211367.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_488211367.pdb # conformation set from SCWRL output # naming current conformation T0284AL556_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL556_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL556_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_643955334.pdb -s /var/tmp/to_scwrl_643955334.seq -o /var/tmp/from_scwrl_643955334.pdb > /var/tmp/scwrl_643955334.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_643955334.pdb # conformation set from SCWRL output # naming current conformation T0284AL556_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL556_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL556_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1184986683.pdb -s /var/tmp/to_scwrl_1184986683.seq -o /var/tmp/from_scwrl_1184986683.pdb > /var/tmp/scwrl_1184986683.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1184986683.pdb # conformation set from SCWRL output # naming current conformation T0284AL556_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL556_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL556_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_205710673.pdb -s /var/tmp/to_scwrl_205710673.seq -o /var/tmp/from_scwrl_205710673.pdb > /var/tmp/scwrl_205710673.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_205710673.pdb # conformation set from SCWRL output # naming current conformation T0284AL556_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284AL706_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL706_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1920579756.pdb -s /var/tmp/to_scwrl_1920579756.seq -o /var/tmp/from_scwrl_1920579756.pdb > /var/tmp/scwrl_1920579756.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1920579756.pdb # conformation set from SCWRL output # naming current conformation T0284AL706_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS005_1 looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS005_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_857690743.pdb -s /var/tmp/to_scwrl_857690743.seq -o /var/tmp/from_scwrl_857690743.pdb > /var/tmp/scwrl_857690743.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_857690743.pdb # conformation set from SCWRL output # naming current conformation T0284TS005_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS010_1 looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation T0284TS010_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1321682093.pdb -s /var/tmp/to_scwrl_1321682093.seq -o /var/tmp/from_scwrl_1321682093.pdb > /var/tmp/scwrl_1321682093.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1321682093.pdb # conformation set from SCWRL output # naming current conformation T0284TS010_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS010_2 looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation T0284TS010_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1739634061.pdb -s /var/tmp/to_scwrl_1739634061.seq -o /var/tmp/from_scwrl_1739634061.pdb > /var/tmp/scwrl_1739634061.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1739634061.pdb # conformation set from SCWRL output # naming current conformation T0284TS010_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS010_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS010_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_812306146.pdb -s /var/tmp/to_scwrl_812306146.seq -o /var/tmp/from_scwrl_812306146.pdb > /var/tmp/scwrl_812306146.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_812306146.pdb # conformation set from SCWRL output # naming current conformation T0284TS010_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS010_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS010_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1375374221.pdb -s /var/tmp/to_scwrl_1375374221.seq -o /var/tmp/from_scwrl_1375374221.pdb > /var/tmp/scwrl_1375374221.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1375374221.pdb # conformation set from SCWRL output # naming current conformation T0284TS010_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS010_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS010_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_698075192.pdb -s /var/tmp/to_scwrl_698075192.seq -o /var/tmp/from_scwrl_698075192.pdb > /var/tmp/scwrl_698075192.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_698075192.pdb # conformation set from SCWRL output # naming current conformation T0284TS010_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS011_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS011_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1670702610.pdb -s /var/tmp/to_scwrl_1670702610.seq -o /var/tmp/from_scwrl_1670702610.pdb > /var/tmp/scwrl_1670702610.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1670702610.pdb # conformation set from SCWRL output # naming current conformation T0284TS011_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS013_1 looking for model 1 Bad short name: O1 for alphabet: pdb_atoms Bad short name: O2 for alphabet: pdb_atoms # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS013_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_2090730640.pdb -s /var/tmp/to_scwrl_2090730640.seq -o /var/tmp/from_scwrl_2090730640.pdb > /var/tmp/scwrl_2090730640.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2090730640.pdb # conformation set from SCWRL output # naming current conformation T0284TS013_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS020_1 looking for model 1 # Found a chain break before 256 # copying to AlignedFragments data structure # naming current conformation T0284TS020_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_582562773.pdb -s /var/tmp/to_scwrl_582562773.seq -o /var/tmp/from_scwrl_582562773.pdb > /var/tmp/scwrl_582562773.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_582562773.pdb # conformation set from SCWRL output # naming current conformation T0284TS020_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS020_2 looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation T0284TS020_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1826074880.pdb -s /var/tmp/to_scwrl_1826074880.seq -o /var/tmp/from_scwrl_1826074880.pdb > /var/tmp/scwrl_1826074880.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1826074880.pdb # conformation set from SCWRL output # naming current conformation T0284TS020_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS020_3 looking for model 1 # Found a chain break before 166 # copying to AlignedFragments data structure # naming current conformation T0284TS020_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1492082328.pdb -s /var/tmp/to_scwrl_1492082328.seq -o /var/tmp/from_scwrl_1492082328.pdb > /var/tmp/scwrl_1492082328.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1492082328.pdb # conformation set from SCWRL output # naming current conformation T0284TS020_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS020_4 looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation T0284TS020_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1497489923.pdb -s /var/tmp/to_scwrl_1497489923.seq -o /var/tmp/from_scwrl_1497489923.pdb > /var/tmp/scwrl_1497489923.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1497489923.pdb # conformation set from SCWRL output # naming current conformation T0284TS020_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS020_5 looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation T0284TS020_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1963561025.pdb -s /var/tmp/to_scwrl_1963561025.seq -o /var/tmp/from_scwrl_1963561025.pdb > /var/tmp/scwrl_1963561025.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1963561025.pdb # conformation set from SCWRL output # naming current conformation T0284TS020_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS021_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS021_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1993876198.pdb -s /var/tmp/to_scwrl_1993876198.seq -o /var/tmp/from_scwrl_1993876198.pdb > /var/tmp/scwrl_1993876198.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1993876198.pdb # conformation set from SCWRL output # naming current conformation T0284TS021_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS022_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS022_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_470204762.pdb -s /var/tmp/to_scwrl_470204762.seq -o /var/tmp/from_scwrl_470204762.pdb > /var/tmp/scwrl_470204762.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_470204762.pdb # conformation set from SCWRL output # naming current conformation T0284TS022_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS022_2 looking for model 1 # Found a chain break before 180 # copying to AlignedFragments data structure # naming current conformation T0284TS022_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_2139593818.pdb -s /var/tmp/to_scwrl_2139593818.seq -o /var/tmp/from_scwrl_2139593818.pdb > /var/tmp/scwrl_2139593818.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2139593818.pdb # conformation set from SCWRL output # naming current conformation T0284TS022_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS022_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS022_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1928870230.pdb -s /var/tmp/to_scwrl_1928870230.seq -o /var/tmp/from_scwrl_1928870230.pdb > /var/tmp/scwrl_1928870230.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1928870230.pdb # conformation set from SCWRL output # naming current conformation T0284TS022_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS022_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS022_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_797138461.pdb -s /var/tmp/to_scwrl_797138461.seq -o /var/tmp/from_scwrl_797138461.pdb > /var/tmp/scwrl_797138461.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_797138461.pdb # conformation set from SCWRL output # naming current conformation T0284TS022_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS022_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS022_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1682139557.pdb -s /var/tmp/to_scwrl_1682139557.seq -o /var/tmp/from_scwrl_1682139557.pdb > /var/tmp/scwrl_1682139557.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1682139557.pdb # conformation set from SCWRL output # naming current conformation T0284TS022_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS024_1 looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation T0284TS024_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1298435656.pdb -s /var/tmp/to_scwrl_1298435656.seq -o /var/tmp/from_scwrl_1298435656.pdb > /var/tmp/scwrl_1298435656.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1298435656.pdb # conformation set from SCWRL output # naming current conformation T0284TS024_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS024_2 looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation T0284TS024_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_468280543.pdb -s /var/tmp/to_scwrl_468280543.seq -o /var/tmp/from_scwrl_468280543.pdb > /var/tmp/scwrl_468280543.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_468280543.pdb # conformation set from SCWRL output # naming current conformation T0284TS024_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS024_3 looking for model 1 # Found a chain break before 232 # copying to AlignedFragments data structure # naming current conformation T0284TS024_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1648525601.pdb -s /var/tmp/to_scwrl_1648525601.seq -o /var/tmp/from_scwrl_1648525601.pdb > /var/tmp/scwrl_1648525601.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1648525601.pdb # conformation set from SCWRL output # naming current conformation T0284TS024_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS024_4 looking for model 1 # Found a chain break before 231 # copying to AlignedFragments data structure # naming current conformation T0284TS024_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1480138669.pdb -s /var/tmp/to_scwrl_1480138669.seq -o /var/tmp/from_scwrl_1480138669.pdb > /var/tmp/scwrl_1480138669.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1480138669.pdb # conformation set from SCWRL output # naming current conformation T0284TS024_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS024_5 looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation T0284TS024_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_934538635.pdb -s /var/tmp/to_scwrl_934538635.seq -o /var/tmp/from_scwrl_934538635.pdb > /var/tmp/scwrl_934538635.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_934538635.pdb # conformation set from SCWRL output # naming current conformation T0284TS024_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS025_1 looking for model 1 # Found a chain break before 203 # copying to AlignedFragments data structure # naming current conformation T0284TS025_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_521116973.pdb -s /var/tmp/to_scwrl_521116973.seq -o /var/tmp/from_scwrl_521116973.pdb > /var/tmp/scwrl_521116973.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_521116973.pdb # conformation set from SCWRL output # naming current conformation T0284TS025_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS025_2 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS025_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_435868052.pdb -s /var/tmp/to_scwrl_435868052.seq -o /var/tmp/from_scwrl_435868052.pdb > /var/tmp/scwrl_435868052.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_435868052.pdb # conformation set from SCWRL output # naming current conformation T0284TS025_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS025_3 looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation T0284TS025_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1422750001.pdb -s /var/tmp/to_scwrl_1422750001.seq -o /var/tmp/from_scwrl_1422750001.pdb > /var/tmp/scwrl_1422750001.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1422750001.pdb # conformation set from SCWRL output # naming current conformation T0284TS025_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS025_4 looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation T0284TS025_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1165072307.pdb -s /var/tmp/to_scwrl_1165072307.seq -o /var/tmp/from_scwrl_1165072307.pdb > /var/tmp/scwrl_1165072307.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1165072307.pdb # conformation set from SCWRL output # naming current conformation T0284TS025_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS025_5 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS025_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1620854736.pdb -s /var/tmp/to_scwrl_1620854736.seq -o /var/tmp/from_scwrl_1620854736.pdb > /var/tmp/scwrl_1620854736.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1620854736.pdb # conformation set from SCWRL output # naming current conformation T0284TS025_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS026_1 looking for model 1 # naming current conformation T0284TS026_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1628460675.pdb -s /var/tmp/to_scwrl_1628460675.seq -o /var/tmp/from_scwrl_1628460675.pdb > /var/tmp/scwrl_1628460675.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1628460675.pdb # conformation set from SCWRL output # naming current conformation T0284TS026_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS026_2 looking for model 1 # naming current conformation T0284TS026_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_938168417.pdb -s /var/tmp/to_scwrl_938168417.seq -o /var/tmp/from_scwrl_938168417.pdb > /var/tmp/scwrl_938168417.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_938168417.pdb # conformation set from SCWRL output # naming current conformation T0284TS026_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS026_3 looking for model 1 # naming current conformation T0284TS026_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_331061832.pdb -s /var/tmp/to_scwrl_331061832.seq -o /var/tmp/from_scwrl_331061832.pdb > /var/tmp/scwrl_331061832.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_331061832.pdb # conformation set from SCWRL output # naming current conformation T0284TS026_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS026_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS026_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_802659122.pdb -s /var/tmp/to_scwrl_802659122.seq -o /var/tmp/from_scwrl_802659122.pdb > /var/tmp/scwrl_802659122.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_802659122.pdb # conformation set from SCWRL output # naming current conformation T0284TS026_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS026_5 looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation T0284TS026_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_530318831.pdb -s /var/tmp/to_scwrl_530318831.seq -o /var/tmp/from_scwrl_530318831.pdb > /var/tmp/scwrl_530318831.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_530318831.pdb # conformation set from SCWRL output # naming current conformation T0284TS026_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS027_1 looking for model 1 # naming current conformation T0284TS027_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1143367977.pdb -s /var/tmp/to_scwrl_1143367977.seq -o /var/tmp/from_scwrl_1143367977.pdb > /var/tmp/scwrl_1143367977.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1143367977.pdb # conformation set from SCWRL output # naming current conformation T0284TS027_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS027_2 looking for model 1 # naming current conformation T0284TS027_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_30549696.pdb -s /var/tmp/to_scwrl_30549696.seq -o /var/tmp/from_scwrl_30549696.pdb > /var/tmp/scwrl_30549696.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_30549696.pdb # conformation set from SCWRL output # naming current conformation T0284TS027_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS027_3 looking for model 1 # naming current conformation T0284TS027_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1228394023.pdb -s /var/tmp/to_scwrl_1228394023.seq -o /var/tmp/from_scwrl_1228394023.pdb > /var/tmp/scwrl_1228394023.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1228394023.pdb # conformation set from SCWRL output # naming current conformation T0284TS027_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS027_4 looking for model 1 # naming current conformation T0284TS027_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_666586941.pdb -s /var/tmp/to_scwrl_666586941.seq -o /var/tmp/from_scwrl_666586941.pdb > /var/tmp/scwrl_666586941.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_666586941.pdb # conformation set from SCWRL output # naming current conformation T0284TS027_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS027_5 looking for model 1 # naming current conformation T0284TS027_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_2121280337.pdb -s /var/tmp/to_scwrl_2121280337.seq -o /var/tmp/from_scwrl_2121280337.pdb > /var/tmp/scwrl_2121280337.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2121280337.pdb # conformation set from SCWRL output # naming current conformation T0284TS027_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS028_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS028_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1810956796.pdb -s /var/tmp/to_scwrl_1810956796.seq -o /var/tmp/from_scwrl_1810956796.pdb > /var/tmp/scwrl_1810956796.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1810956796.pdb # conformation set from SCWRL output # naming current conformation T0284TS028_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS028_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS028_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_345178175.pdb -s /var/tmp/to_scwrl_345178175.seq -o /var/tmp/from_scwrl_345178175.pdb > /var/tmp/scwrl_345178175.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_345178175.pdb # conformation set from SCWRL output # naming current conformation T0284TS028_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS028_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS028_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1465879018.pdb -s /var/tmp/to_scwrl_1465879018.seq -o /var/tmp/from_scwrl_1465879018.pdb > /var/tmp/scwrl_1465879018.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1465879018.pdb # conformation set from SCWRL output # naming current conformation T0284TS028_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS028_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS028_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1160963072.pdb -s /var/tmp/to_scwrl_1160963072.seq -o /var/tmp/from_scwrl_1160963072.pdb > /var/tmp/scwrl_1160963072.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1160963072.pdb # conformation set from SCWRL output # naming current conformation T0284TS028_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS028_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS028_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_161255553.pdb -s /var/tmp/to_scwrl_161255553.seq -o /var/tmp/from_scwrl_161255553.pdb > /var/tmp/scwrl_161255553.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_161255553.pdb # conformation set from SCWRL output # naming current conformation T0284TS028_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS034_1 looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation T0284TS034_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1312271569.pdb -s /var/tmp/to_scwrl_1312271569.seq -o /var/tmp/from_scwrl_1312271569.pdb > /var/tmp/scwrl_1312271569.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1312271569.pdb # conformation set from SCWRL output # naming current conformation T0284TS034_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS034_2 looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation T0284TS034_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1631167834.pdb -s /var/tmp/to_scwrl_1631167834.seq -o /var/tmp/from_scwrl_1631167834.pdb > /var/tmp/scwrl_1631167834.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1631167834.pdb # conformation set from SCWRL output # naming current conformation T0284TS034_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS034_3 looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation T0284TS034_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_153365725.pdb -s /var/tmp/to_scwrl_153365725.seq -o /var/tmp/from_scwrl_153365725.pdb > /var/tmp/scwrl_153365725.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_153365725.pdb # conformation set from SCWRL output # naming current conformation T0284TS034_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS034_4 looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation T0284TS034_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1093658152.pdb -s /var/tmp/to_scwrl_1093658152.seq -o /var/tmp/from_scwrl_1093658152.pdb > /var/tmp/scwrl_1093658152.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1093658152.pdb # conformation set from SCWRL output # naming current conformation T0284TS034_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS034_5 looking for model 1 # Found a chain break before 265 # copying to AlignedFragments data structure # naming current conformation T0284TS034_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_280822648.pdb -s /var/tmp/to_scwrl_280822648.seq -o /var/tmp/from_scwrl_280822648.pdb > /var/tmp/scwrl_280822648.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_280822648.pdb # conformation set from SCWRL output # naming current conformation T0284TS034_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS035_1 looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation T0284TS035_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1835505282.pdb -s /var/tmp/to_scwrl_1835505282.seq -o /var/tmp/from_scwrl_1835505282.pdb > /var/tmp/scwrl_1835505282.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1835505282.pdb # conformation set from SCWRL output # naming current conformation T0284TS035_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS035_2 looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation T0284TS035_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_244610163.pdb -s /var/tmp/to_scwrl_244610163.seq -o /var/tmp/from_scwrl_244610163.pdb > /var/tmp/scwrl_244610163.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_244610163.pdb # conformation set from SCWRL output # naming current conformation T0284TS035_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS035_3 looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation T0284TS035_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_749103191.pdb -s /var/tmp/to_scwrl_749103191.seq -o /var/tmp/from_scwrl_749103191.pdb > /var/tmp/scwrl_749103191.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_749103191.pdb # conformation set from SCWRL output # naming current conformation T0284TS035_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS035_4 looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation T0284TS035_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1336547236.pdb -s /var/tmp/to_scwrl_1336547236.seq -o /var/tmp/from_scwrl_1336547236.pdb > /var/tmp/scwrl_1336547236.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1336547236.pdb # conformation set from SCWRL output # naming current conformation T0284TS035_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS035_5 looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation T0284TS035_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1724748832.pdb -s /var/tmp/to_scwrl_1724748832.seq -o /var/tmp/from_scwrl_1724748832.pdb > /var/tmp/scwrl_1724748832.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1724748832.pdb # conformation set from SCWRL output # naming current conformation T0284TS035_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS038_1 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS038_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1683641825.pdb -s /var/tmp/to_scwrl_1683641825.seq -o /var/tmp/from_scwrl_1683641825.pdb > /var/tmp/scwrl_1683641825.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1683641825.pdb # conformation set from SCWRL output # naming current conformation T0284TS038_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS038_2 looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation T0284TS038_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1857664209.pdb -s /var/tmp/to_scwrl_1857664209.seq -o /var/tmp/from_scwrl_1857664209.pdb > /var/tmp/scwrl_1857664209.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1857664209.pdb # conformation set from SCWRL output # naming current conformation T0284TS038_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS038_3 looking for model 1 # Found a chain break before 255 # copying to AlignedFragments data structure # naming current conformation T0284TS038_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_13133237.pdb -s /var/tmp/to_scwrl_13133237.seq -o /var/tmp/from_scwrl_13133237.pdb > /var/tmp/scwrl_13133237.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_13133237.pdb # conformation set from SCWRL output # naming current conformation T0284TS038_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS046_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS046_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_958908181.pdb -s /var/tmp/to_scwrl_958908181.seq -o /var/tmp/from_scwrl_958908181.pdb > /var/tmp/scwrl_958908181.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_958908181.pdb # conformation set from SCWRL output # naming current conformation T0284TS046_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS046_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS046_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_875252870.pdb -s /var/tmp/to_scwrl_875252870.seq -o /var/tmp/from_scwrl_875252870.pdb > /var/tmp/scwrl_875252870.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_875252870.pdb # conformation set from SCWRL output # naming current conformation T0284TS046_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS046_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS046_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1633987973.pdb -s /var/tmp/to_scwrl_1633987973.seq -o /var/tmp/from_scwrl_1633987973.pdb > /var/tmp/scwrl_1633987973.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1633987973.pdb # conformation set from SCWRL output # naming current conformation T0284TS046_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS046_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS046_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_439885209.pdb -s /var/tmp/to_scwrl_439885209.seq -o /var/tmp/from_scwrl_439885209.pdb > /var/tmp/scwrl_439885209.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_439885209.pdb # conformation set from SCWRL output # naming current conformation T0284TS046_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS046_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS046_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1813421287.pdb -s /var/tmp/to_scwrl_1813421287.seq -o /var/tmp/from_scwrl_1813421287.pdb > /var/tmp/scwrl_1813421287.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1813421287.pdb # conformation set from SCWRL output # naming current conformation T0284TS046_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS047_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS047_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1965049805.pdb -s /var/tmp/to_scwrl_1965049805.seq -o /var/tmp/from_scwrl_1965049805.pdb > /var/tmp/scwrl_1965049805.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1965049805.pdb # conformation set from SCWRL output # naming current conformation T0284TS047_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS047_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS047_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1242544330.pdb -s /var/tmp/to_scwrl_1242544330.seq -o /var/tmp/from_scwrl_1242544330.pdb > /var/tmp/scwrl_1242544330.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1242544330.pdb # conformation set from SCWRL output # naming current conformation T0284TS047_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS047_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS047_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_196256471.pdb -s /var/tmp/to_scwrl_196256471.seq -o /var/tmp/from_scwrl_196256471.pdb > /var/tmp/scwrl_196256471.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_196256471.pdb # conformation set from SCWRL output # naming current conformation T0284TS047_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS047_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS047_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_960934137.pdb -s /var/tmp/to_scwrl_960934137.seq -o /var/tmp/from_scwrl_960934137.pdb > /var/tmp/scwrl_960934137.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_960934137.pdb # conformation set from SCWRL output # naming current conformation T0284TS047_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS047_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS047_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1273094026.pdb -s /var/tmp/to_scwrl_1273094026.seq -o /var/tmp/from_scwrl_1273094026.pdb > /var/tmp/scwrl_1273094026.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1273094026.pdb # conformation set from SCWRL output # naming current conformation T0284TS047_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS050_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS050_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1424650494.pdb -s /var/tmp/to_scwrl_1424650494.seq -o /var/tmp/from_scwrl_1424650494.pdb > /var/tmp/scwrl_1424650494.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1424650494.pdb # conformation set from SCWRL output # naming current conformation T0284TS050_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS050_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS050_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1627521077.pdb -s /var/tmp/to_scwrl_1627521077.seq -o /var/tmp/from_scwrl_1627521077.pdb > /var/tmp/scwrl_1627521077.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1627521077.pdb # conformation set from SCWRL output # naming current conformation T0284TS050_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS050_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS050_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1246890716.pdb -s /var/tmp/to_scwrl_1246890716.seq -o /var/tmp/from_scwrl_1246890716.pdb > /var/tmp/scwrl_1246890716.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1246890716.pdb # conformation set from SCWRL output # naming current conformation T0284TS050_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS050_4 looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # naming current conformation T0284TS050_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1088123643.pdb -s /var/tmp/to_scwrl_1088123643.seq -o /var/tmp/from_scwrl_1088123643.pdb > /var/tmp/scwrl_1088123643.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1088123643.pdb # conformation set from SCWRL output # naming current conformation T0284TS050_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS050_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS050_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1972699252.pdb -s /var/tmp/to_scwrl_1972699252.seq -o /var/tmp/from_scwrl_1972699252.pdb > /var/tmp/scwrl_1972699252.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1972699252.pdb # conformation set from SCWRL output # naming current conformation T0284TS050_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS054_1 looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS054_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_565286088.pdb -s /var/tmp/to_scwrl_565286088.seq -o /var/tmp/from_scwrl_565286088.pdb > /var/tmp/scwrl_565286088.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_565286088.pdb # conformation set from SCWRL output # naming current conformation T0284TS054_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS060_1 looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation T0284TS060_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_101603069.pdb -s /var/tmp/to_scwrl_101603069.seq -o /var/tmp/from_scwrl_101603069.pdb > /var/tmp/scwrl_101603069.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_101603069.pdb # conformation set from SCWRL output # naming current conformation T0284TS060_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS060_2 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS060_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_2133954806.pdb -s /var/tmp/to_scwrl_2133954806.seq -o /var/tmp/from_scwrl_2133954806.pdb > /var/tmp/scwrl_2133954806.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2133954806.pdb # conformation set from SCWRL output # naming current conformation T0284TS060_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS060_3 looking for model 1 # Found a chain break before 255 # copying to AlignedFragments data structure # naming current conformation T0284TS060_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1877557658.pdb -s /var/tmp/to_scwrl_1877557658.seq -o /var/tmp/from_scwrl_1877557658.pdb > /var/tmp/scwrl_1877557658.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1877557658.pdb # conformation set from SCWRL output # naming current conformation T0284TS060_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS060_4 looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation T0284TS060_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1732770904.pdb -s /var/tmp/to_scwrl_1732770904.seq -o /var/tmp/from_scwrl_1732770904.pdb > /var/tmp/scwrl_1732770904.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1732770904.pdb # conformation set from SCWRL output # naming current conformation T0284TS060_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS060_5 looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation T0284TS060_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_139836884.pdb -s /var/tmp/to_scwrl_139836884.seq -o /var/tmp/from_scwrl_139836884.pdb > /var/tmp/scwrl_139836884.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_139836884.pdb # conformation set from SCWRL output # naming current conformation T0284TS060_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS063_1 looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation T0284TS063_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_823732164.pdb -s /var/tmp/to_scwrl_823732164.seq -o /var/tmp/from_scwrl_823732164.pdb > /var/tmp/scwrl_823732164.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_823732164.pdb # conformation set from SCWRL output # naming current conformation T0284TS063_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS063_2 looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation T0284TS063_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_2013593552.pdb -s /var/tmp/to_scwrl_2013593552.seq -o /var/tmp/from_scwrl_2013593552.pdb > /var/tmp/scwrl_2013593552.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2013593552.pdb # conformation set from SCWRL output # naming current conformation T0284TS063_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS063_3 looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation T0284TS063_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1975342166.pdb -s /var/tmp/to_scwrl_1975342166.seq -o /var/tmp/from_scwrl_1975342166.pdb > /var/tmp/scwrl_1975342166.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1975342166.pdb # conformation set from SCWRL output # naming current conformation T0284TS063_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS063_4 looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation T0284TS063_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1068342327.pdb -s /var/tmp/to_scwrl_1068342327.seq -o /var/tmp/from_scwrl_1068342327.pdb > /var/tmp/scwrl_1068342327.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1068342327.pdb # conformation set from SCWRL output # naming current conformation T0284TS063_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS064_1 looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation T0284TS064_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_615213097.pdb -s /var/tmp/to_scwrl_615213097.seq -o /var/tmp/from_scwrl_615213097.pdb > /var/tmp/scwrl_615213097.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_615213097.pdb # conformation set from SCWRL output # naming current conformation T0284TS064_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS071_1 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS071_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1164405755.pdb -s /var/tmp/to_scwrl_1164405755.seq -o /var/tmp/from_scwrl_1164405755.pdb > /var/tmp/scwrl_1164405755.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1164405755.pdb # conformation set from SCWRL output # naming current conformation T0284TS071_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS071_2 looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation T0284TS071_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_645607512.pdb -s /var/tmp/to_scwrl_645607512.seq -o /var/tmp/from_scwrl_645607512.pdb > /var/tmp/scwrl_645607512.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_645607512.pdb # conformation set from SCWRL output # naming current conformation T0284TS071_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS071_3 looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS071_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_151371275.pdb -s /var/tmp/to_scwrl_151371275.seq -o /var/tmp/from_scwrl_151371275.pdb > /var/tmp/scwrl_151371275.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_151371275.pdb # conformation set from SCWRL output # naming current conformation T0284TS071_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS071_4 looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation T0284TS071_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_874586318.pdb -s /var/tmp/to_scwrl_874586318.seq -o /var/tmp/from_scwrl_874586318.pdb > /var/tmp/scwrl_874586318.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_874586318.pdb # conformation set from SCWRL output # naming current conformation T0284TS071_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS071_5 looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation T0284TS071_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_658740750.pdb -s /var/tmp/to_scwrl_658740750.seq -o /var/tmp/from_scwrl_658740750.pdb > /var/tmp/scwrl_658740750.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_658740750.pdb # conformation set from SCWRL output # naming current conformation T0284TS071_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS074_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS074_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1110279455.pdb -s /var/tmp/to_scwrl_1110279455.seq -o /var/tmp/from_scwrl_1110279455.pdb > /var/tmp/scwrl_1110279455.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1110279455.pdb # conformation set from SCWRL output # naming current conformation T0284TS074_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS074_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS074_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1749839188.pdb -s /var/tmp/to_scwrl_1749839188.seq -o /var/tmp/from_scwrl_1749839188.pdb > /var/tmp/scwrl_1749839188.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1749839188.pdb # conformation set from SCWRL output # naming current conformation T0284TS074_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS074_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS074_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_145245076.pdb -s /var/tmp/to_scwrl_145245076.seq -o /var/tmp/from_scwrl_145245076.pdb > /var/tmp/scwrl_145245076.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_145245076.pdb # conformation set from SCWRL output # naming current conformation T0284TS074_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS083_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS083_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1550164664.pdb -s /var/tmp/to_scwrl_1550164664.seq -o /var/tmp/from_scwrl_1550164664.pdb > /var/tmp/scwrl_1550164664.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1550164664.pdb # conformation set from SCWRL output # naming current conformation T0284TS083_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS083_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS083_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1415776828.pdb -s /var/tmp/to_scwrl_1415776828.seq -o /var/tmp/from_scwrl_1415776828.pdb > /var/tmp/scwrl_1415776828.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1415776828.pdb # conformation set from SCWRL output # naming current conformation T0284TS083_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS083_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS083_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_2110294882.pdb -s /var/tmp/to_scwrl_2110294882.seq -o /var/tmp/from_scwrl_2110294882.pdb > /var/tmp/scwrl_2110294882.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2110294882.pdb # conformation set from SCWRL output # naming current conformation T0284TS083_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS083_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS083_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_645225348.pdb -s /var/tmp/to_scwrl_645225348.seq -o /var/tmp/from_scwrl_645225348.pdb > /var/tmp/scwrl_645225348.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_645225348.pdb # conformation set from SCWRL output # naming current conformation T0284TS083_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS083_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS083_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1612033299.pdb -s /var/tmp/to_scwrl_1612033299.seq -o /var/tmp/from_scwrl_1612033299.pdb > /var/tmp/scwrl_1612033299.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1612033299.pdb # conformation set from SCWRL output # naming current conformation T0284TS083_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS087_1 looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # naming current conformation T0284TS087_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_923745372.pdb -s /var/tmp/to_scwrl_923745372.seq -o /var/tmp/from_scwrl_923745372.pdb > /var/tmp/scwrl_923745372.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_923745372.pdb # conformation set from SCWRL output # naming current conformation T0284TS087_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS087_2 looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # naming current conformation T0284TS087_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1918319375.pdb -s /var/tmp/to_scwrl_1918319375.seq -o /var/tmp/from_scwrl_1918319375.pdb > /var/tmp/scwrl_1918319375.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1918319375.pdb # conformation set from SCWRL output # naming current conformation T0284TS087_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS087_3 looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # naming current conformation T0284TS087_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_889200148.pdb -s /var/tmp/to_scwrl_889200148.seq -o /var/tmp/from_scwrl_889200148.pdb > /var/tmp/scwrl_889200148.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_889200148.pdb # conformation set from SCWRL output # naming current conformation T0284TS087_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS087_4 looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # naming current conformation T0284TS087_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_403782802.pdb -s /var/tmp/to_scwrl_403782802.seq -o /var/tmp/from_scwrl_403782802.pdb > /var/tmp/scwrl_403782802.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_403782802.pdb # conformation set from SCWRL output # naming current conformation T0284TS087_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS087_5 looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # naming current conformation T0284TS087_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1017726445.pdb -s /var/tmp/to_scwrl_1017726445.seq -o /var/tmp/from_scwrl_1017726445.pdb > /var/tmp/scwrl_1017726445.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1017726445.pdb # conformation set from SCWRL output # naming current conformation T0284TS087_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS091_1 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS091_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1977323791.pdb -s /var/tmp/to_scwrl_1977323791.seq -o /var/tmp/from_scwrl_1977323791.pdb > /var/tmp/scwrl_1977323791.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1977323791.pdb # conformation set from SCWRL output # naming current conformation T0284TS091_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS091_2 looking for model 1 # Found a chain break before 238 # copying to AlignedFragments data structure # naming current conformation T0284TS091_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_228998408.pdb -s /var/tmp/to_scwrl_228998408.seq -o /var/tmp/from_scwrl_228998408.pdb > /var/tmp/scwrl_228998408.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_228998408.pdb # conformation set from SCWRL output # naming current conformation T0284TS091_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS091_3 looking for model 1 # Found a chain break before 207 # copying to AlignedFragments data structure # naming current conformation T0284TS091_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1583012533.pdb -s /var/tmp/to_scwrl_1583012533.seq -o /var/tmp/from_scwrl_1583012533.pdb > /var/tmp/scwrl_1583012533.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1583012533.pdb # conformation set from SCWRL output # naming current conformation T0284TS091_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS091_4 looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation T0284TS091_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_2078926861.pdb -s /var/tmp/to_scwrl_2078926861.seq -o /var/tmp/from_scwrl_2078926861.pdb > /var/tmp/scwrl_2078926861.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2078926861.pdb # conformation set from SCWRL output # naming current conformation T0284TS091_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS091_5 looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation T0284TS091_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_215469567.pdb -s /var/tmp/to_scwrl_215469567.seq -o /var/tmp/from_scwrl_215469567.pdb > /var/tmp/scwrl_215469567.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_215469567.pdb # conformation set from SCWRL output # naming current conformation T0284TS091_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS092_1 looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation T0284TS092_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1313086544.pdb -s /var/tmp/to_scwrl_1313086544.seq -o /var/tmp/from_scwrl_1313086544.pdb > /var/tmp/scwrl_1313086544.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1313086544.pdb # conformation set from SCWRL output # naming current conformation T0284TS092_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS092_2 looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation T0284TS092_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1664214118.pdb -s /var/tmp/to_scwrl_1664214118.seq -o /var/tmp/from_scwrl_1664214118.pdb > /var/tmp/scwrl_1664214118.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1664214118.pdb # conformation set from SCWRL output # naming current conformation T0284TS092_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS092_3 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS092_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_355306451.pdb -s /var/tmp/to_scwrl_355306451.seq -o /var/tmp/from_scwrl_355306451.pdb > /var/tmp/scwrl_355306451.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_355306451.pdb # conformation set from SCWRL output # naming current conformation T0284TS092_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS092_4 looking for model 1 # Found a chain break before 205 # copying to AlignedFragments data structure # naming current conformation T0284TS092_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_2136818708.pdb -s /var/tmp/to_scwrl_2136818708.seq -o /var/tmp/from_scwrl_2136818708.pdb > /var/tmp/scwrl_2136818708.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2136818708.pdb # conformation set from SCWRL output # naming current conformation T0284TS092_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS092_5 looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation T0284TS092_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1530324023.pdb -s /var/tmp/to_scwrl_1530324023.seq -o /var/tmp/from_scwrl_1530324023.pdb > /var/tmp/scwrl_1530324023.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1530324023.pdb # conformation set from SCWRL output # naming current conformation T0284TS092_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS102_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS102_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_183164970.pdb -s /var/tmp/to_scwrl_183164970.seq -o /var/tmp/from_scwrl_183164970.pdb > /var/tmp/scwrl_183164970.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_183164970.pdb # conformation set from SCWRL output # naming current conformation T0284TS102_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS102_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS102_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1057677389.pdb -s /var/tmp/to_scwrl_1057677389.seq -o /var/tmp/from_scwrl_1057677389.pdb > /var/tmp/scwrl_1057677389.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1057677389.pdb # conformation set from SCWRL output # naming current conformation T0284TS102_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS102_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS102_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_2145537120.pdb -s /var/tmp/to_scwrl_2145537120.seq -o /var/tmp/from_scwrl_2145537120.pdb > /var/tmp/scwrl_2145537120.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2145537120.pdb # conformation set from SCWRL output # naming current conformation T0284TS102_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS102_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS102_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1347570725.pdb -s /var/tmp/to_scwrl_1347570725.seq -o /var/tmp/from_scwrl_1347570725.pdb > /var/tmp/scwrl_1347570725.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1347570725.pdb # conformation set from SCWRL output # naming current conformation T0284TS102_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS102_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS102_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1703284900.pdb -s /var/tmp/to_scwrl_1703284900.seq -o /var/tmp/from_scwrl_1703284900.pdb > /var/tmp/scwrl_1703284900.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1703284900.pdb # conformation set from SCWRL output # naming current conformation T0284TS102_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS103_1 looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation T0284TS103_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_149424749.pdb -s /var/tmp/to_scwrl_149424749.seq -o /var/tmp/from_scwrl_149424749.pdb > /var/tmp/scwrl_149424749.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_149424749.pdb # conformation set from SCWRL output # naming current conformation T0284TS103_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS105_1 looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation T0284TS105_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_74673396.pdb -s /var/tmp/to_scwrl_74673396.seq -o /var/tmp/from_scwrl_74673396.pdb > /var/tmp/scwrl_74673396.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_74673396.pdb # conformation set from SCWRL output # naming current conformation T0284TS105_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS105_2 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS105_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_214542003.pdb -s /var/tmp/to_scwrl_214542003.seq -o /var/tmp/from_scwrl_214542003.pdb > /var/tmp/scwrl_214542003.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_214542003.pdb # conformation set from SCWRL output # naming current conformation T0284TS105_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS105_3 looking for model 1 # naming current conformation T0284TS105_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1259704204.pdb -s /var/tmp/to_scwrl_1259704204.seq -o /var/tmp/from_scwrl_1259704204.pdb > /var/tmp/scwrl_1259704204.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1259704204.pdb # conformation set from SCWRL output # naming current conformation T0284TS105_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS105_4 looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation T0284TS105_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1824512584.pdb -s /var/tmp/to_scwrl_1824512584.seq -o /var/tmp/from_scwrl_1824512584.pdb > /var/tmp/scwrl_1824512584.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1824512584.pdb # conformation set from SCWRL output # naming current conformation T0284TS105_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS105_5 looking for model 1 # Found a chain break before 202 # copying to AlignedFragments data structure # naming current conformation T0284TS105_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_359787080.pdb -s /var/tmp/to_scwrl_359787080.seq -o /var/tmp/from_scwrl_359787080.pdb > /var/tmp/scwrl_359787080.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_359787080.pdb # conformation set from SCWRL output # naming current conformation T0284TS105_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS111_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS111_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_662385223.pdb -s /var/tmp/to_scwrl_662385223.seq -o /var/tmp/from_scwrl_662385223.pdb > /var/tmp/scwrl_662385223.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_662385223.pdb # conformation set from SCWRL output # naming current conformation T0284TS111_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS111_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS111_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1092805765.pdb -s /var/tmp/to_scwrl_1092805765.seq -o /var/tmp/from_scwrl_1092805765.pdb > /var/tmp/scwrl_1092805765.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1092805765.pdb # conformation set from SCWRL output # naming current conformation T0284TS111_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS111_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS111_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_322598315.pdb -s /var/tmp/to_scwrl_322598315.seq -o /var/tmp/from_scwrl_322598315.pdb > /var/tmp/scwrl_322598315.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_322598315.pdb # conformation set from SCWRL output # naming current conformation T0284TS111_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS111_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS111_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1307610570.pdb -s /var/tmp/to_scwrl_1307610570.seq -o /var/tmp/from_scwrl_1307610570.pdb > /var/tmp/scwrl_1307610570.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1307610570.pdb # conformation set from SCWRL output # naming current conformation T0284TS111_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS113_1 looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation T0284TS113_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_557355419.pdb -s /var/tmp/to_scwrl_557355419.seq -o /var/tmp/from_scwrl_557355419.pdb > /var/tmp/scwrl_557355419.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_557355419.pdb # conformation set from SCWRL output # naming current conformation T0284TS113_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS113_2 looking for model 1 # Found a chain break before 11 # copying to AlignedFragments data structure # naming current conformation T0284TS113_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1246343686.pdb -s /var/tmp/to_scwrl_1246343686.seq -o /var/tmp/from_scwrl_1246343686.pdb > /var/tmp/scwrl_1246343686.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1246343686.pdb # conformation set from SCWRL output # naming current conformation T0284TS113_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS113_3 looking for model 1 # Found a chain break before 233 # copying to AlignedFragments data structure # naming current conformation T0284TS113_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1078446298.pdb -s /var/tmp/to_scwrl_1078446298.seq -o /var/tmp/from_scwrl_1078446298.pdb > /var/tmp/scwrl_1078446298.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1078446298.pdb # conformation set from SCWRL output # naming current conformation T0284TS113_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS113_4 looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation T0284TS113_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1446555566.pdb -s /var/tmp/to_scwrl_1446555566.seq -o /var/tmp/from_scwrl_1446555566.pdb > /var/tmp/scwrl_1446555566.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1446555566.pdb # conformation set from SCWRL output # naming current conformation T0284TS113_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS113_5 looking for model 1 # Found a chain break before 205 # copying to AlignedFragments data structure # naming current conformation T0284TS113_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1650126488.pdb -s /var/tmp/to_scwrl_1650126488.seq -o /var/tmp/from_scwrl_1650126488.pdb > /var/tmp/scwrl_1650126488.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1650126488.pdb # conformation set from SCWRL output # naming current conformation T0284TS113_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS125_1 looking for model 1 # Found a chain break before 255 # copying to AlignedFragments data structure # naming current conformation T0284TS125_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_2096172744.pdb -s /var/tmp/to_scwrl_2096172744.seq -o /var/tmp/from_scwrl_2096172744.pdb > /var/tmp/scwrl_2096172744.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2096172744.pdb # conformation set from SCWRL output # naming current conformation T0284TS125_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS125_1u looking for model 1 Error: Reading chain '' from PDB file predictions/T0284TS125_1u failed---no such chain. # naming current conformation T0284TS125_1u # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1276395710.pdb -s /var/tmp/to_scwrl_1276395710.seq -o /var/tmp/from_scwrl_1276395710.pdb > /var/tmp/scwrl_1276395710.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1276395710.pdb # conformation set from SCWRL output # naming current conformation T0284TS125_1u-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS125_2 looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS125_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1879124896.pdb -s /var/tmp/to_scwrl_1879124896.seq -o /var/tmp/from_scwrl_1879124896.pdb > /var/tmp/scwrl_1879124896.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1879124896.pdb # conformation set from SCWRL output # naming current conformation T0284TS125_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS125_2u looking for model 1 Error: Reading chain '' from PDB file predictions/T0284TS125_2u failed---no such chain. # naming current conformation T0284TS125_2u # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1531701630.pdb -s /var/tmp/to_scwrl_1531701630.seq -o /var/tmp/from_scwrl_1531701630.pdb > /var/tmp/scwrl_1531701630.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1531701630.pdb # conformation set from SCWRL output # naming current conformation T0284TS125_2u-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS125_3 looking for model 1 # Found a chain break before 257 # copying to AlignedFragments data structure # naming current conformation T0284TS125_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1207838924.pdb -s /var/tmp/to_scwrl_1207838924.seq -o /var/tmp/from_scwrl_1207838924.pdb > /var/tmp/scwrl_1207838924.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1207838924.pdb # conformation set from SCWRL output # naming current conformation T0284TS125_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS125_3u looking for model 1 Error: Reading chain '' from PDB file predictions/T0284TS125_3u failed---no such chain. # naming current conformation T0284TS125_3u # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_2094594463.pdb -s /var/tmp/to_scwrl_2094594463.seq -o /var/tmp/from_scwrl_2094594463.pdb > /var/tmp/scwrl_2094594463.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2094594463.pdb # conformation set from SCWRL output # naming current conformation T0284TS125_3u-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS125_4 looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS125_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_697304528.pdb -s /var/tmp/to_scwrl_697304528.seq -o /var/tmp/from_scwrl_697304528.pdb > /var/tmp/scwrl_697304528.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_697304528.pdb # conformation set from SCWRL output # naming current conformation T0284TS125_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS125_4u looking for model 1 Error: Reading chain '' from PDB file predictions/T0284TS125_4u failed---no such chain. # naming current conformation T0284TS125_4u # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_724569396.pdb -s /var/tmp/to_scwrl_724569396.seq -o /var/tmp/from_scwrl_724569396.pdb > /var/tmp/scwrl_724569396.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_724569396.pdb # conformation set from SCWRL output # naming current conformation T0284TS125_4u-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS125_5 looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation T0284TS125_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_302417267.pdb -s /var/tmp/to_scwrl_302417267.seq -o /var/tmp/from_scwrl_302417267.pdb > /var/tmp/scwrl_302417267.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_302417267.pdb # conformation set from SCWRL output # naming current conformation T0284TS125_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS125_5u looking for model 1 Error: Reading chain '' from PDB file predictions/T0284TS125_5u failed---no such chain. # naming current conformation T0284TS125_5u # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_686639589.pdb -s /var/tmp/to_scwrl_686639589.seq -o /var/tmp/from_scwrl_686639589.pdb > /var/tmp/scwrl_686639589.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_686639589.pdb # conformation set from SCWRL output # naming current conformation T0284TS125_5u-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS132_1 looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS132_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_107409773.pdb -s /var/tmp/to_scwrl_107409773.seq -o /var/tmp/from_scwrl_107409773.pdb > /var/tmp/scwrl_107409773.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_107409773.pdb # conformation set from SCWRL output # naming current conformation T0284TS132_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS135_1 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS135_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_485582237.pdb -s /var/tmp/to_scwrl_485582237.seq -o /var/tmp/from_scwrl_485582237.pdb > /var/tmp/scwrl_485582237.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_485582237.pdb # conformation set from SCWRL output # naming current conformation T0284TS135_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS136_1 looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation T0284TS136_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1744316977.pdb -s /var/tmp/to_scwrl_1744316977.seq -o /var/tmp/from_scwrl_1744316977.pdb > /var/tmp/scwrl_1744316977.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1744316977.pdb # conformation set from SCWRL output # naming current conformation T0284TS136_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS136_2 looking for model 1 # Found a chain break before 210 # copying to AlignedFragments data structure # naming current conformation T0284TS136_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_105463246.pdb -s /var/tmp/to_scwrl_105463246.seq -o /var/tmp/from_scwrl_105463246.pdb > /var/tmp/scwrl_105463246.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_105463246.pdb # conformation set from SCWRL output # naming current conformation T0284TS136_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS136_3 looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation T0284TS136_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1833152962.pdb -s /var/tmp/to_scwrl_1833152962.seq -o /var/tmp/from_scwrl_1833152962.pdb > /var/tmp/scwrl_1833152962.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1833152962.pdb # conformation set from SCWRL output # naming current conformation T0284TS136_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS136_4 looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation T0284TS136_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1300118231.pdb -s /var/tmp/to_scwrl_1300118231.seq -o /var/tmp/from_scwrl_1300118231.pdb > /var/tmp/scwrl_1300118231.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1300118231.pdb # conformation set from SCWRL output # naming current conformation T0284TS136_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS136_5 looking for model 1 # Found a chain break before 261 # copying to AlignedFragments data structure # naming current conformation T0284TS136_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_254887995.pdb -s /var/tmp/to_scwrl_254887995.seq -o /var/tmp/from_scwrl_254887995.pdb > /var/tmp/scwrl_254887995.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_254887995.pdb # conformation set from SCWRL output # naming current conformation T0284TS136_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS137_1 looking for model 1 # Found a chain break before 268 # copying to AlignedFragments data structure # naming current conformation T0284TS137_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1907826359.pdb -s /var/tmp/to_scwrl_1907826359.seq -o /var/tmp/from_scwrl_1907826359.pdb > /var/tmp/scwrl_1907826359.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1907826359.pdb # conformation set from SCWRL output # naming current conformation T0284TS137_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS137_2 looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation T0284TS137_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1514660234.pdb -s /var/tmp/to_scwrl_1514660234.seq -o /var/tmp/from_scwrl_1514660234.pdb > /var/tmp/scwrl_1514660234.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1514660234.pdb # conformation set from SCWRL output # naming current conformation T0284TS137_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS137_3 looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation T0284TS137_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1514592200.pdb -s /var/tmp/to_scwrl_1514592200.seq -o /var/tmp/from_scwrl_1514592200.pdb > /var/tmp/scwrl_1514592200.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1514592200.pdb # conformation set from SCWRL output # naming current conformation T0284TS137_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS137_4 looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation T0284TS137_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1584855296.pdb -s /var/tmp/to_scwrl_1584855296.seq -o /var/tmp/from_scwrl_1584855296.pdb > /var/tmp/scwrl_1584855296.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1584855296.pdb # conformation set from SCWRL output # naming current conformation T0284TS137_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS137_5 looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation T0284TS137_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1874447314.pdb -s /var/tmp/to_scwrl_1874447314.seq -o /var/tmp/from_scwrl_1874447314.pdb > /var/tmp/scwrl_1874447314.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1874447314.pdb # conformation set from SCWRL output # naming current conformation T0284TS137_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS139_1 looking for model 1 # Found a chain break before 231 # copying to AlignedFragments data structure # naming current conformation T0284TS139_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_29493776.pdb -s /var/tmp/to_scwrl_29493776.seq -o /var/tmp/from_scwrl_29493776.pdb > /var/tmp/scwrl_29493776.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_29493776.pdb # conformation set from SCWRL output # naming current conformation T0284TS139_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS139_2 looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation T0284TS139_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_530177416.pdb -s /var/tmp/to_scwrl_530177416.seq -o /var/tmp/from_scwrl_530177416.pdb > /var/tmp/scwrl_530177416.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_530177416.pdb # conformation set from SCWRL output # naming current conformation T0284TS139_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS139_3 looking for model 1 # Found a chain break before 127 # copying to AlignedFragments data structure # naming current conformation T0284TS139_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_49561982.pdb -s /var/tmp/to_scwrl_49561982.seq -o /var/tmp/from_scwrl_49561982.pdb > /var/tmp/scwrl_49561982.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_49561982.pdb # conformation set from SCWRL output # naming current conformation T0284TS139_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS139_4 looking for model 1 # Found a chain break before 255 # copying to AlignedFragments data structure # naming current conformation T0284TS139_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1337104346.pdb -s /var/tmp/to_scwrl_1337104346.seq -o /var/tmp/from_scwrl_1337104346.pdb > /var/tmp/scwrl_1337104346.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1337104346.pdb # conformation set from SCWRL output # naming current conformation T0284TS139_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS139_5 looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS139_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1087532834.pdb -s /var/tmp/to_scwrl_1087532834.seq -o /var/tmp/from_scwrl_1087532834.pdb > /var/tmp/scwrl_1087532834.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1087532834.pdb # conformation set from SCWRL output # naming current conformation T0284TS139_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS168_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS168_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1295905668.pdb -s /var/tmp/to_scwrl_1295905668.seq -o /var/tmp/from_scwrl_1295905668.pdb > /var/tmp/scwrl_1295905668.log Error: Couldn't open file /var/tmp/from_scwrl_1295905668.pdb or /var/tmp/from_scwrl_1295905668.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1295905668_b.pdb or decoys//var/tmp/from_scwrl_1295905668_b.pdb.gz for input Trying /var/tmp/from_scwrl_1295905668_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1295905668_b.pdb or /var/tmp/from_scwrl_1295905668_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1295905668_a.pdb or decoys//var/tmp/from_scwrl_1295905668_a.pdb.gz for input Trying /var/tmp/from_scwrl_1295905668_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1295905668_a.pdb or /var/tmp/from_scwrl_1295905668_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1295905668.pdb or /var/tmp/from_scwrl_1295905668_b.pdb or /var/tmp/from_scwrl_1295905668_a.pdb Error: no new SCWRL conformation added # naming current conformation T0284TS168_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS168_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS168_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_268066999.pdb -s /var/tmp/to_scwrl_268066999.seq -o /var/tmp/from_scwrl_268066999.pdb > /var/tmp/scwrl_268066999.log Error: Couldn't open file /var/tmp/from_scwrl_268066999.pdb or /var/tmp/from_scwrl_268066999.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_268066999_b.pdb or decoys//var/tmp/from_scwrl_268066999_b.pdb.gz for input Trying /var/tmp/from_scwrl_268066999_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_268066999_b.pdb or /var/tmp/from_scwrl_268066999_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_268066999_a.pdb or decoys//var/tmp/from_scwrl_268066999_a.pdb.gz for input Trying /var/tmp/from_scwrl_268066999_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_268066999_a.pdb or /var/tmp/from_scwrl_268066999_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_268066999.pdb or /var/tmp/from_scwrl_268066999_b.pdb or /var/tmp/from_scwrl_268066999_a.pdb Error: no new SCWRL conformation added # naming current conformation T0284TS168_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS168_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS168_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_386604754.pdb -s /var/tmp/to_scwrl_386604754.seq -o /var/tmp/from_scwrl_386604754.pdb > /var/tmp/scwrl_386604754.log Error: Couldn't open file /var/tmp/from_scwrl_386604754.pdb or /var/tmp/from_scwrl_386604754.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_386604754_b.pdb or decoys//var/tmp/from_scwrl_386604754_b.pdb.gz for input Trying /var/tmp/from_scwrl_386604754_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_386604754_b.pdb or /var/tmp/from_scwrl_386604754_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_386604754_a.pdb or decoys//var/tmp/from_scwrl_386604754_a.pdb.gz for input Trying /var/tmp/from_scwrl_386604754_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_386604754_a.pdb or /var/tmp/from_scwrl_386604754_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_386604754.pdb or /var/tmp/from_scwrl_386604754_b.pdb or /var/tmp/from_scwrl_386604754_a.pdb Error: no new SCWRL conformation added # naming current conformation T0284TS168_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS168_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS168_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_798548511.pdb -s /var/tmp/to_scwrl_798548511.seq -o /var/tmp/from_scwrl_798548511.pdb > /var/tmp/scwrl_798548511.log Error: Couldn't open file /var/tmp/from_scwrl_798548511.pdb or /var/tmp/from_scwrl_798548511.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_798548511_b.pdb or decoys//var/tmp/from_scwrl_798548511_b.pdb.gz for input Trying /var/tmp/from_scwrl_798548511_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_798548511_b.pdb or /var/tmp/from_scwrl_798548511_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_798548511_a.pdb or decoys//var/tmp/from_scwrl_798548511_a.pdb.gz for input Trying /var/tmp/from_scwrl_798548511_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_798548511_a.pdb or /var/tmp/from_scwrl_798548511_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_798548511.pdb or /var/tmp/from_scwrl_798548511_b.pdb or /var/tmp/from_scwrl_798548511_a.pdb Error: no new SCWRL conformation added # naming current conformation T0284TS168_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS168_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS168_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_216756096.pdb -s /var/tmp/to_scwrl_216756096.seq -o /var/tmp/from_scwrl_216756096.pdb > /var/tmp/scwrl_216756096.log Error: Couldn't open file /var/tmp/from_scwrl_216756096.pdb or /var/tmp/from_scwrl_216756096.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_216756096_b.pdb or decoys//var/tmp/from_scwrl_216756096_b.pdb.gz for input Trying /var/tmp/from_scwrl_216756096_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_216756096_b.pdb or /var/tmp/from_scwrl_216756096_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_216756096_a.pdb or decoys//var/tmp/from_scwrl_216756096_a.pdb.gz for input Trying /var/tmp/from_scwrl_216756096_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_216756096_a.pdb or /var/tmp/from_scwrl_216756096_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_216756096.pdb or /var/tmp/from_scwrl_216756096_b.pdb or /var/tmp/from_scwrl_216756096_a.pdb Error: no new SCWRL conformation added # naming current conformation T0284TS168_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS178_1 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS178_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1663000464.pdb -s /var/tmp/to_scwrl_1663000464.seq -o /var/tmp/from_scwrl_1663000464.pdb > /var/tmp/scwrl_1663000464.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1663000464.pdb # conformation set from SCWRL output # naming current conformation T0284TS178_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS178_2 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS178_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_530189760.pdb -s /var/tmp/to_scwrl_530189760.seq -o /var/tmp/from_scwrl_530189760.pdb > /var/tmp/scwrl_530189760.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_530189760.pdb # conformation set from SCWRL output # naming current conformation T0284TS178_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS178_3 looking for model 1 # Found a chain break before 227 # copying to AlignedFragments data structure # naming current conformation T0284TS178_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1748457726.pdb -s /var/tmp/to_scwrl_1748457726.seq -o /var/tmp/from_scwrl_1748457726.pdb > /var/tmp/scwrl_1748457726.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1748457726.pdb # conformation set from SCWRL output # naming current conformation T0284TS178_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS178_4 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS178_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_723355743.pdb -s /var/tmp/to_scwrl_723355743.seq -o /var/tmp/from_scwrl_723355743.pdb > /var/tmp/scwrl_723355743.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_723355743.pdb # conformation set from SCWRL output # naming current conformation T0284TS178_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS178_5 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS178_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_477300577.pdb -s /var/tmp/to_scwrl_477300577.seq -o /var/tmp/from_scwrl_477300577.pdb > /var/tmp/scwrl_477300577.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_477300577.pdb # conformation set from SCWRL output # naming current conformation T0284TS178_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS179_1 looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation T0284TS179_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_298278607.pdb -s /var/tmp/to_scwrl_298278607.seq -o /var/tmp/from_scwrl_298278607.pdb > /var/tmp/scwrl_298278607.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_298278607.pdb # conformation set from SCWRL output # naming current conformation T0284TS179_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS179_2 looking for model 1 # Found a chain break before 254 # copying to AlignedFragments data structure # naming current conformation T0284TS179_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1447925138.pdb -s /var/tmp/to_scwrl_1447925138.seq -o /var/tmp/from_scwrl_1447925138.pdb > /var/tmp/scwrl_1447925138.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1447925138.pdb # conformation set from SCWRL output # naming current conformation T0284TS179_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS179_3 looking for model 1 # Found a chain break before 254 # copying to AlignedFragments data structure # naming current conformation T0284TS179_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_779717844.pdb -s /var/tmp/to_scwrl_779717844.seq -o /var/tmp/from_scwrl_779717844.pdb > /var/tmp/scwrl_779717844.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_779717844.pdb # conformation set from SCWRL output # naming current conformation T0284TS179_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS179_4 looking for model 1 # Found a chain break before 254 # copying to AlignedFragments data structure # naming current conformation T0284TS179_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_984918196.pdb -s /var/tmp/to_scwrl_984918196.seq -o /var/tmp/from_scwrl_984918196.pdb > /var/tmp/scwrl_984918196.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_984918196.pdb # conformation set from SCWRL output # naming current conformation T0284TS179_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS179_5 looking for model 1 # Found a chain break before 246 # copying to AlignedFragments data structure # naming current conformation T0284TS179_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1555334911.pdb -s /var/tmp/to_scwrl_1555334911.seq -o /var/tmp/from_scwrl_1555334911.pdb > /var/tmp/scwrl_1555334911.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1555334911.pdb # conformation set from SCWRL output # naming current conformation T0284TS179_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS186_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS186_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1265300081.pdb -s /var/tmp/to_scwrl_1265300081.seq -o /var/tmp/from_scwrl_1265300081.pdb > /var/tmp/scwrl_1265300081.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1265300081.pdb # conformation set from SCWRL output # naming current conformation T0284TS186_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS186_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS186_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_581751527.pdb -s /var/tmp/to_scwrl_581751527.seq -o /var/tmp/from_scwrl_581751527.pdb > /var/tmp/scwrl_581751527.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_581751527.pdb # conformation set from SCWRL output # naming current conformation T0284TS186_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS186_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS186_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1660798158.pdb -s /var/tmp/to_scwrl_1660798158.seq -o /var/tmp/from_scwrl_1660798158.pdb > /var/tmp/scwrl_1660798158.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1660798158.pdb # conformation set from SCWRL output # naming current conformation T0284TS186_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS186_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS186_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_950969397.pdb -s /var/tmp/to_scwrl_950969397.seq -o /var/tmp/from_scwrl_950969397.pdb > /var/tmp/scwrl_950969397.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_950969397.pdb # conformation set from SCWRL output # naming current conformation T0284TS186_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS186_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS186_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1881869758.pdb -s /var/tmp/to_scwrl_1881869758.seq -o /var/tmp/from_scwrl_1881869758.pdb > /var/tmp/scwrl_1881869758.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1881869758.pdb # conformation set from SCWRL output # naming current conformation T0284TS186_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS193_1 looking for model 1 WARNING: atoms too close: (T0284)G213.O and (T0284)N214.N only 0 apart, perturbing (T0284)N214.N # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation T0284TS193_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1282794706.pdb -s /var/tmp/to_scwrl_1282794706.seq -o /var/tmp/from_scwrl_1282794706.pdb > /var/tmp/scwrl_1282794706.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1282794706.pdb # conformation set from SCWRL output # naming current conformation T0284TS193_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS197_1 looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS197_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_148683759.pdb -s /var/tmp/to_scwrl_148683759.seq -o /var/tmp/from_scwrl_148683759.pdb > /var/tmp/scwrl_148683759.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_148683759.pdb # conformation set from SCWRL output # naming current conformation T0284TS197_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS197_2 looking for model 1 # Found a chain break before 261 # copying to AlignedFragments data structure # naming current conformation T0284TS197_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_976010014.pdb -s /var/tmp/to_scwrl_976010014.seq -o /var/tmp/from_scwrl_976010014.pdb > /var/tmp/scwrl_976010014.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_976010014.pdb # conformation set from SCWRL output # naming current conformation T0284TS197_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS197_3 looking for model 1 # Found a chain break before 205 # copying to AlignedFragments data structure # naming current conformation T0284TS197_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1312288482.pdb -s /var/tmp/to_scwrl_1312288482.seq -o /var/tmp/from_scwrl_1312288482.pdb > /var/tmp/scwrl_1312288482.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1312288482.pdb # conformation set from SCWRL output # naming current conformation T0284TS197_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS197_4 looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS197_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_678861175.pdb -s /var/tmp/to_scwrl_678861175.seq -o /var/tmp/from_scwrl_678861175.pdb > /var/tmp/scwrl_678861175.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_678861175.pdb # conformation set from SCWRL output # naming current conformation T0284TS197_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS197_5 looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS197_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1025571996.pdb -s /var/tmp/to_scwrl_1025571996.seq -o /var/tmp/from_scwrl_1025571996.pdb > /var/tmp/scwrl_1025571996.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1025571996.pdb # conformation set from SCWRL output # naming current conformation T0284TS197_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS203_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS203_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_501909183.pdb -s /var/tmp/to_scwrl_501909183.seq -o /var/tmp/from_scwrl_501909183.pdb > /var/tmp/scwrl_501909183.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_501909183.pdb # conformation set from SCWRL output # naming current conformation T0284TS203_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS203_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS203_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1766394009.pdb -s /var/tmp/to_scwrl_1766394009.seq -o /var/tmp/from_scwrl_1766394009.pdb > /var/tmp/scwrl_1766394009.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1766394009.pdb # conformation set from SCWRL output # naming current conformation T0284TS203_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS203_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS203_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_173994018.pdb -s /var/tmp/to_scwrl_173994018.seq -o /var/tmp/from_scwrl_173994018.pdb > /var/tmp/scwrl_173994018.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_173994018.pdb # conformation set from SCWRL output # naming current conformation T0284TS203_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS203_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS203_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_769976182.pdb -s /var/tmp/to_scwrl_769976182.seq -o /var/tmp/from_scwrl_769976182.pdb > /var/tmp/scwrl_769976182.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_769976182.pdb # conformation set from SCWRL output # naming current conformation T0284TS203_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS205_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS205_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_5515116.pdb -s /var/tmp/to_scwrl_5515116.seq -o /var/tmp/from_scwrl_5515116.pdb > /var/tmp/scwrl_5515116.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_5515116.pdb # conformation set from SCWRL output # naming current conformation T0284TS205_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS205_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS205_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_972542529.pdb -s /var/tmp/to_scwrl_972542529.seq -o /var/tmp/from_scwrl_972542529.pdb > /var/tmp/scwrl_972542529.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_972542529.pdb # conformation set from SCWRL output # naming current conformation T0284TS205_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS205_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS205_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_986732278.pdb -s /var/tmp/to_scwrl_986732278.seq -o /var/tmp/from_scwrl_986732278.pdb > /var/tmp/scwrl_986732278.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_986732278.pdb # conformation set from SCWRL output # naming current conformation T0284TS205_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS205_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS205_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1668515580.pdb -s /var/tmp/to_scwrl_1668515580.seq -o /var/tmp/from_scwrl_1668515580.pdb > /var/tmp/scwrl_1668515580.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1668515580.pdb # conformation set from SCWRL output # naming current conformation T0284TS205_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS205_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS205_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1502732288.pdb -s /var/tmp/to_scwrl_1502732288.seq -o /var/tmp/from_scwrl_1502732288.pdb > /var/tmp/scwrl_1502732288.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1502732288.pdb # conformation set from SCWRL output # naming current conformation T0284TS205_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS209_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS209_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_587706357.pdb -s /var/tmp/to_scwrl_587706357.seq -o /var/tmp/from_scwrl_587706357.pdb > /var/tmp/scwrl_587706357.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_587706357.pdb # conformation set from SCWRL output # naming current conformation T0284TS209_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS209_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS209_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_244387676.pdb -s /var/tmp/to_scwrl_244387676.seq -o /var/tmp/from_scwrl_244387676.pdb > /var/tmp/scwrl_244387676.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_244387676.pdb # conformation set from SCWRL output # naming current conformation T0284TS209_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS209_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS209_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1980032865.pdb -s /var/tmp/to_scwrl_1980032865.seq -o /var/tmp/from_scwrl_1980032865.pdb > /var/tmp/scwrl_1980032865.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1980032865.pdb # conformation set from SCWRL output # naming current conformation T0284TS209_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS209_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS209_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_885984964.pdb -s /var/tmp/to_scwrl_885984964.seq -o /var/tmp/from_scwrl_885984964.pdb > /var/tmp/scwrl_885984964.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_885984964.pdb # conformation set from SCWRL output # naming current conformation T0284TS209_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS209_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS209_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1692312815.pdb -s /var/tmp/to_scwrl_1692312815.seq -o /var/tmp/from_scwrl_1692312815.pdb > /var/tmp/scwrl_1692312815.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1692312815.pdb # conformation set from SCWRL output # naming current conformation T0284TS209_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS211_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS211_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_612267063.pdb -s /var/tmp/to_scwrl_612267063.seq -o /var/tmp/from_scwrl_612267063.pdb > /var/tmp/scwrl_612267063.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_612267063.pdb # conformation set from SCWRL output # naming current conformation T0284TS211_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS211_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS211_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1870903159.pdb -s /var/tmp/to_scwrl_1870903159.seq -o /var/tmp/from_scwrl_1870903159.pdb > /var/tmp/scwrl_1870903159.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1870903159.pdb # conformation set from SCWRL output # naming current conformation T0284TS211_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS211_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS211_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1100164079.pdb -s /var/tmp/to_scwrl_1100164079.seq -o /var/tmp/from_scwrl_1100164079.pdb > /var/tmp/scwrl_1100164079.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1100164079.pdb # conformation set from SCWRL output # naming current conformation T0284TS211_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS211_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS211_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1877567144.pdb -s /var/tmp/to_scwrl_1877567144.seq -o /var/tmp/from_scwrl_1877567144.pdb > /var/tmp/scwrl_1877567144.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1877567144.pdb # conformation set from SCWRL output # naming current conformation T0284TS211_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS211_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS211_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_305171039.pdb -s /var/tmp/to_scwrl_305171039.seq -o /var/tmp/from_scwrl_305171039.pdb > /var/tmp/scwrl_305171039.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_305171039.pdb # conformation set from SCWRL output # naming current conformation T0284TS211_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS212_1 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS212_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_613478591.pdb -s /var/tmp/to_scwrl_613478591.seq -o /var/tmp/from_scwrl_613478591.pdb > /var/tmp/scwrl_613478591.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_613478591.pdb # conformation set from SCWRL output # naming current conformation T0284TS212_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS213_1 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS213_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_681052894.pdb -s /var/tmp/to_scwrl_681052894.seq -o /var/tmp/from_scwrl_681052894.pdb > /var/tmp/scwrl_681052894.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_681052894.pdb # conformation set from SCWRL output # naming current conformation T0284TS213_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS214_1 looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation T0284TS214_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_39557150.pdb -s /var/tmp/to_scwrl_39557150.seq -o /var/tmp/from_scwrl_39557150.pdb > /var/tmp/scwrl_39557150.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_39557150.pdb # conformation set from SCWRL output # naming current conformation T0284TS214_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS224_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS224_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_381681098.pdb -s /var/tmp/to_scwrl_381681098.seq -o /var/tmp/from_scwrl_381681098.pdb > /var/tmp/scwrl_381681098.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_381681098.pdb # conformation set from SCWRL output # naming current conformation T0284TS224_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS234_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS234_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1392365003.pdb -s /var/tmp/to_scwrl_1392365003.seq -o /var/tmp/from_scwrl_1392365003.pdb > /var/tmp/scwrl_1392365003.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1392365003.pdb # conformation set from SCWRL output # naming current conformation T0284TS234_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS239_1_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS239_1_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1288603496.pdb -s /var/tmp/to_scwrl_1288603496.seq -o /var/tmp/from_scwrl_1288603496.pdb > /var/tmp/scwrl_1288603496.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1288603496.pdb # conformation set from SCWRL output # naming current conformation T0284TS239_1_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS239_1_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS239_1_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1664475804.pdb -s /var/tmp/to_scwrl_1664475804.seq -o /var/tmp/from_scwrl_1664475804.pdb > /var/tmp/scwrl_1664475804.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1664475804.pdb # conformation set from SCWRL output # naming current conformation T0284TS239_1_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS239_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS239_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1541048762.pdb -s /var/tmp/to_scwrl_1541048762.seq -o /var/tmp/from_scwrl_1541048762.pdb > /var/tmp/scwrl_1541048762.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1541048762.pdb # conformation set from SCWRL output # naming current conformation T0284TS239_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS239_3_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS239_3_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_117129863.pdb -s /var/tmp/to_scwrl_117129863.seq -o /var/tmp/from_scwrl_117129863.pdb > /var/tmp/scwrl_117129863.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_117129863.pdb # conformation set from SCWRL output # naming current conformation T0284TS239_3_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS239_3_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS239_3_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_829280641.pdb -s /var/tmp/to_scwrl_829280641.seq -o /var/tmp/from_scwrl_829280641.pdb > /var/tmp/scwrl_829280641.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_829280641.pdb # conformation set from SCWRL output # naming current conformation T0284TS239_3_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS239_3_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS239_3_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_72426290.pdb -s /var/tmp/to_scwrl_72426290.seq -o /var/tmp/from_scwrl_72426290.pdb > /var/tmp/scwrl_72426290.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_72426290.pdb # conformation set from SCWRL output # naming current conformation T0284TS239_3_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS239_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS239_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1142701858.pdb -s /var/tmp/to_scwrl_1142701858.seq -o /var/tmp/from_scwrl_1142701858.pdb > /var/tmp/scwrl_1142701858.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1142701858.pdb # conformation set from SCWRL output # naming current conformation T0284TS239_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS239_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS239_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1331189823.pdb -s /var/tmp/to_scwrl_1331189823.seq -o /var/tmp/from_scwrl_1331189823.pdb > /var/tmp/scwrl_1331189823.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1331189823.pdb # conformation set from SCWRL output # naming current conformation T0284TS239_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS245_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS245_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1838820299.pdb -s /var/tmp/to_scwrl_1838820299.seq -o /var/tmp/from_scwrl_1838820299.pdb > /var/tmp/scwrl_1838820299.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1838820299.pdb # conformation set from SCWRL output # naming current conformation T0284TS245_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS247_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS247_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1316695876.pdb -s /var/tmp/to_scwrl_1316695876.seq -o /var/tmp/from_scwrl_1316695876.pdb > /var/tmp/scwrl_1316695876.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1316695876.pdb # conformation set from SCWRL output # naming current conformation T0284TS247_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS247_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS247_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_2101166005.pdb -s /var/tmp/to_scwrl_2101166005.seq -o /var/tmp/from_scwrl_2101166005.pdb > /var/tmp/scwrl_2101166005.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2101166005.pdb # conformation set from SCWRL output # naming current conformation T0284TS247_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS247_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS247_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1844335415.pdb -s /var/tmp/to_scwrl_1844335415.seq -o /var/tmp/from_scwrl_1844335415.pdb > /var/tmp/scwrl_1844335415.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1844335415.pdb # conformation set from SCWRL output # naming current conformation T0284TS247_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS247_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS247_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_141754758.pdb -s /var/tmp/to_scwrl_141754758.seq -o /var/tmp/from_scwrl_141754758.pdb > /var/tmp/scwrl_141754758.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_141754758.pdb # conformation set from SCWRL output # naming current conformation T0284TS247_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS247_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS247_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_940414636.pdb -s /var/tmp/to_scwrl_940414636.seq -o /var/tmp/from_scwrl_940414636.pdb > /var/tmp/scwrl_940414636.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_940414636.pdb # conformation set from SCWRL output # naming current conformation T0284TS247_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS248_1 looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation T0284TS248_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1365367348.pdb -s /var/tmp/to_scwrl_1365367348.seq -o /var/tmp/from_scwrl_1365367348.pdb > /var/tmp/scwrl_1365367348.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1365367348.pdb # conformation set from SCWRL output # naming current conformation T0284TS248_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS248_2 looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # naming current conformation T0284TS248_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1644487047.pdb -s /var/tmp/to_scwrl_1644487047.seq -o /var/tmp/from_scwrl_1644487047.pdb > /var/tmp/scwrl_1644487047.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1644487047.pdb # conformation set from SCWRL output # naming current conformation T0284TS248_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS248_3 looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # naming current conformation T0284TS248_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1528120992.pdb -s /var/tmp/to_scwrl_1528120992.seq -o /var/tmp/from_scwrl_1528120992.pdb > /var/tmp/scwrl_1528120992.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1528120992.pdb # conformation set from SCWRL output # naming current conformation T0284TS248_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS248_4 looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation T0284TS248_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1609755025.pdb -s /var/tmp/to_scwrl_1609755025.seq -o /var/tmp/from_scwrl_1609755025.pdb > /var/tmp/scwrl_1609755025.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1609755025.pdb # conformation set from SCWRL output # naming current conformation T0284TS248_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS248_5 looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation T0284TS248_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1477036265.pdb -s /var/tmp/to_scwrl_1477036265.seq -o /var/tmp/from_scwrl_1477036265.pdb > /var/tmp/scwrl_1477036265.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1477036265.pdb # conformation set from SCWRL output # naming current conformation T0284TS248_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS249_1 looking for model 1 # naming current conformation T0284TS249_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_266622309.pdb -s /var/tmp/to_scwrl_266622309.seq -o /var/tmp/from_scwrl_266622309.pdb > /var/tmp/scwrl_266622309.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_266622309.pdb # conformation set from SCWRL output # naming current conformation T0284TS249_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS250_1 looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation T0284TS250_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1154584193.pdb -s /var/tmp/to_scwrl_1154584193.seq -o /var/tmp/from_scwrl_1154584193.pdb > /var/tmp/scwrl_1154584193.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1154584193.pdb # conformation set from SCWRL output # naming current conformation T0284TS250_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS250_2 looking for model 1 # Found a chain break before 227 # copying to AlignedFragments data structure # naming current conformation T0284TS250_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_2089303328.pdb -s /var/tmp/to_scwrl_2089303328.seq -o /var/tmp/from_scwrl_2089303328.pdb > /var/tmp/scwrl_2089303328.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2089303328.pdb # conformation set from SCWRL output # naming current conformation T0284TS250_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS250_3 looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS250_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_2137525468.pdb -s /var/tmp/to_scwrl_2137525468.seq -o /var/tmp/from_scwrl_2137525468.pdb > /var/tmp/scwrl_2137525468.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2137525468.pdb # conformation set from SCWRL output # naming current conformation T0284TS250_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS250_4 looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation T0284TS250_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_107264626.pdb -s /var/tmp/to_scwrl_107264626.seq -o /var/tmp/from_scwrl_107264626.pdb > /var/tmp/scwrl_107264626.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_107264626.pdb # conformation set from SCWRL output # naming current conformation T0284TS250_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS250_5 looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation T0284TS250_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1819386825.pdb -s /var/tmp/to_scwrl_1819386825.seq -o /var/tmp/from_scwrl_1819386825.pdb > /var/tmp/scwrl_1819386825.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1819386825.pdb # conformation set from SCWRL output # naming current conformation T0284TS250_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS261_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS261_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_295212861.pdb -s /var/tmp/to_scwrl_295212861.seq -o /var/tmp/from_scwrl_295212861.pdb > /var/tmp/scwrl_295212861.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_295212861.pdb # conformation set from SCWRL output # naming current conformation T0284TS261_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS267_1 looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation T0284TS267_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_720743218.pdb -s /var/tmp/to_scwrl_720743218.seq -o /var/tmp/from_scwrl_720743218.pdb > /var/tmp/scwrl_720743218.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_720743218.pdb # conformation set from SCWRL output # naming current conformation T0284TS267_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS267_2 looking for model 1 # Found a chain break before 181 # copying to AlignedFragments data structure # naming current conformation T0284TS267_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_352956073.pdb -s /var/tmp/to_scwrl_352956073.seq -o /var/tmp/from_scwrl_352956073.pdb > /var/tmp/scwrl_352956073.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_352956073.pdb # conformation set from SCWRL output # naming current conformation T0284TS267_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS267_3 looking for model 1 # Found a chain break before 206 # copying to AlignedFragments data structure # naming current conformation T0284TS267_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_334770011.pdb -s /var/tmp/to_scwrl_334770011.seq -o /var/tmp/from_scwrl_334770011.pdb > /var/tmp/scwrl_334770011.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_334770011.pdb # conformation set from SCWRL output # naming current conformation T0284TS267_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS267_4 looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation T0284TS267_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1102424315.pdb -s /var/tmp/to_scwrl_1102424315.seq -o /var/tmp/from_scwrl_1102424315.pdb > /var/tmp/scwrl_1102424315.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1102424315.pdb # conformation set from SCWRL output # naming current conformation T0284TS267_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS267_5 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS267_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1745321076.pdb -s /var/tmp/to_scwrl_1745321076.seq -o /var/tmp/from_scwrl_1745321076.pdb > /var/tmp/scwrl_1745321076.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1745321076.pdb # conformation set from SCWRL output # naming current conformation T0284TS267_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS268_1 looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation T0284TS268_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1623373507.pdb -s /var/tmp/to_scwrl_1623373507.seq -o /var/tmp/from_scwrl_1623373507.pdb > /var/tmp/scwrl_1623373507.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1623373507.pdb # conformation set from SCWRL output # naming current conformation T0284TS268_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS268_2 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS268_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_619416473.pdb -s /var/tmp/to_scwrl_619416473.seq -o /var/tmp/from_scwrl_619416473.pdb > /var/tmp/scwrl_619416473.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_619416473.pdb # conformation set from SCWRL output # naming current conformation T0284TS268_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS268_3 looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation T0284TS268_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1138886191.pdb -s /var/tmp/to_scwrl_1138886191.seq -o /var/tmp/from_scwrl_1138886191.pdb > /var/tmp/scwrl_1138886191.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1138886191.pdb # conformation set from SCWRL output # naming current conformation T0284TS268_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS268_4 looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation T0284TS268_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1740503370.pdb -s /var/tmp/to_scwrl_1740503370.seq -o /var/tmp/from_scwrl_1740503370.pdb > /var/tmp/scwrl_1740503370.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1740503370.pdb # conformation set from SCWRL output # naming current conformation T0284TS268_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS268_5 looking for model 1 # Found a chain break before 210 # copying to AlignedFragments data structure # naming current conformation T0284TS268_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1448697113.pdb -s /var/tmp/to_scwrl_1448697113.seq -o /var/tmp/from_scwrl_1448697113.pdb > /var/tmp/scwrl_1448697113.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1448697113.pdb # conformation set from SCWRL output # naming current conformation T0284TS268_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS273_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS273_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1211312481.pdb -s /var/tmp/to_scwrl_1211312481.seq -o /var/tmp/from_scwrl_1211312481.pdb > /var/tmp/scwrl_1211312481.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1211312481.pdb # conformation set from SCWRL output # naming current conformation T0284TS273_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS274_1 looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation T0284TS274_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_735721583.pdb -s /var/tmp/to_scwrl_735721583.seq -o /var/tmp/from_scwrl_735721583.pdb > /var/tmp/scwrl_735721583.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_735721583.pdb # conformation set from SCWRL output # naming current conformation T0284TS274_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS275_1 looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS275_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_632403290.pdb -s /var/tmp/to_scwrl_632403290.seq -o /var/tmp/from_scwrl_632403290.pdb > /var/tmp/scwrl_632403290.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_632403290.pdb # conformation set from SCWRL output # naming current conformation T0284TS275_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS276_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS276_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_902649134.pdb -s /var/tmp/to_scwrl_902649134.seq -o /var/tmp/from_scwrl_902649134.pdb > /var/tmp/scwrl_902649134.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_902649134.pdb # conformation set from SCWRL output # naming current conformation T0284TS276_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS276_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS276_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_2052417459.pdb -s /var/tmp/to_scwrl_2052417459.seq -o /var/tmp/from_scwrl_2052417459.pdb > /var/tmp/scwrl_2052417459.log Error: Couldn't open file /var/tmp/from_scwrl_2052417459.pdb or /var/tmp/from_scwrl_2052417459.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_2052417459_b.pdb or decoys//var/tmp/from_scwrl_2052417459_b.pdb.gz for input Trying /var/tmp/from_scwrl_2052417459_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_2052417459_b.pdb or /var/tmp/from_scwrl_2052417459_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_2052417459_a.pdb or decoys//var/tmp/from_scwrl_2052417459_a.pdb.gz for input Trying /var/tmp/from_scwrl_2052417459_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_2052417459_a.pdb or /var/tmp/from_scwrl_2052417459_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_2052417459.pdb or /var/tmp/from_scwrl_2052417459_b.pdb or /var/tmp/from_scwrl_2052417459_a.pdb Error: no new SCWRL conformation added # naming current conformation T0284TS276_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS276_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS276_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_586085648.pdb -s /var/tmp/to_scwrl_586085648.seq -o /var/tmp/from_scwrl_586085648.pdb > /var/tmp/scwrl_586085648.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_586085648.pdb # conformation set from SCWRL output # naming current conformation T0284TS276_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS276_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS276_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_599500902.pdb -s /var/tmp/to_scwrl_599500902.seq -o /var/tmp/from_scwrl_599500902.pdb > /var/tmp/scwrl_599500902.log Error: Couldn't open file /var/tmp/from_scwrl_599500902.pdb or /var/tmp/from_scwrl_599500902.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_599500902_b.pdb or decoys//var/tmp/from_scwrl_599500902_b.pdb.gz for input Trying /var/tmp/from_scwrl_599500902_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_599500902_b.pdb or /var/tmp/from_scwrl_599500902_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_599500902_a.pdb or decoys//var/tmp/from_scwrl_599500902_a.pdb.gz for input Trying /var/tmp/from_scwrl_599500902_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_599500902_a.pdb or /var/tmp/from_scwrl_599500902_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_599500902.pdb or /var/tmp/from_scwrl_599500902_b.pdb or /var/tmp/from_scwrl_599500902_a.pdb Error: no new SCWRL conformation added # naming current conformation T0284TS276_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS276_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS276_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_46688571.pdb -s /var/tmp/to_scwrl_46688571.seq -o /var/tmp/from_scwrl_46688571.pdb > /var/tmp/scwrl_46688571.log Error: Couldn't open file /var/tmp/from_scwrl_46688571.pdb or /var/tmp/from_scwrl_46688571.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_46688571_b.pdb or decoys//var/tmp/from_scwrl_46688571_b.pdb.gz for input Trying /var/tmp/from_scwrl_46688571_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_46688571_b.pdb or /var/tmp/from_scwrl_46688571_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_46688571_a.pdb or decoys//var/tmp/from_scwrl_46688571_a.pdb.gz for input Trying /var/tmp/from_scwrl_46688571_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_46688571_a.pdb or /var/tmp/from_scwrl_46688571_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_46688571.pdb or /var/tmp/from_scwrl_46688571_b.pdb or /var/tmp/from_scwrl_46688571_a.pdb Error: no new SCWRL conformation added # naming current conformation T0284TS276_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS277_1 looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation T0284TS277_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1526500283.pdb -s /var/tmp/to_scwrl_1526500283.seq -o /var/tmp/from_scwrl_1526500283.pdb > /var/tmp/scwrl_1526500283.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1526500283.pdb # conformation set from SCWRL output # naming current conformation T0284TS277_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS277_2 looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation T0284TS277_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1964868250.pdb -s /var/tmp/to_scwrl_1964868250.seq -o /var/tmp/from_scwrl_1964868250.pdb > /var/tmp/scwrl_1964868250.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1964868250.pdb # conformation set from SCWRL output # naming current conformation T0284TS277_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS277_3 looking for model 1 # Found a chain break before 261 # copying to AlignedFragments data structure # naming current conformation T0284TS277_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1691175618.pdb -s /var/tmp/to_scwrl_1691175618.seq -o /var/tmp/from_scwrl_1691175618.pdb > /var/tmp/scwrl_1691175618.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1691175618.pdb # conformation set from SCWRL output # naming current conformation T0284TS277_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS277_4 looking for model 1 # Found a chain break before 262 # copying to AlignedFragments data structure # naming current conformation T0284TS277_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_907137629.pdb -s /var/tmp/to_scwrl_907137629.seq -o /var/tmp/from_scwrl_907137629.pdb > /var/tmp/scwrl_907137629.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_907137629.pdb # conformation set from SCWRL output # naming current conformation T0284TS277_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS277_5 looking for model 1 # Found a chain break before 257 # copying to AlignedFragments data structure # naming current conformation T0284TS277_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1427139628.pdb -s /var/tmp/to_scwrl_1427139628.seq -o /var/tmp/from_scwrl_1427139628.pdb > /var/tmp/scwrl_1427139628.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1427139628.pdb # conformation set from SCWRL output # naming current conformation T0284TS277_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS297_1 looking for model 1 Bad short name: CAY for alphabet: pdb_atoms Bad short name: CY for alphabet: pdb_atoms Bad short name: OY for alphabet: pdb_atoms Bad short name: NT for alphabet: pdb_atoms Bad short name: CAT for alphabet: pdb_atoms # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS297_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1020728237.pdb -s /var/tmp/to_scwrl_1020728237.seq -o /var/tmp/from_scwrl_1020728237.pdb > /var/tmp/scwrl_1020728237.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1020728237.pdb # conformation set from SCWRL output # naming current conformation T0284TS297_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS297_2 looking for model 1 Bad short name: CAY for alphabet: pdb_atoms Bad short name: CY for alphabet: pdb_atoms Bad short name: OY for alphabet: pdb_atoms Bad short name: NT for alphabet: pdb_atoms Bad short name: CAT for alphabet: pdb_atoms Bad short name: CAY for alphabet: pdb_atoms Bad short name: CY for alphabet: pdb_atoms Bad short name: OY for alphabet: pdb_atoms Bad short name: NT for alphabet: pdb_atoms Bad short name: CAT for alphabet: pdb_atoms # Found a chain break before 226 # copying to AlignedFragments data structure # naming current conformation T0284TS297_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1173759937.pdb -s /var/tmp/to_scwrl_1173759937.seq -o /var/tmp/from_scwrl_1173759937.pdb > /var/tmp/scwrl_1173759937.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1173759937.pdb # conformation set from SCWRL output # naming current conformation T0284TS297_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS297_3 looking for model 1 Bad short name: CAY for alphabet: pdb_atoms Bad short name: CY for alphabet: pdb_atoms Bad short name: OY for alphabet: pdb_atoms Bad short name: NT for alphabet: pdb_atoms Bad short name: CAT for alphabet: pdb_atoms # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS297_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_434240175.pdb -s /var/tmp/to_scwrl_434240175.seq -o /var/tmp/from_scwrl_434240175.pdb > /var/tmp/scwrl_434240175.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_434240175.pdb # conformation set from SCWRL output # naming current conformation T0284TS297_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS297_4 looking for model 1 Bad short name: CAY for alphabet: pdb_atoms Bad short name: CY for alphabet: pdb_atoms Bad short name: OY for alphabet: pdb_atoms Bad short name: NT for alphabet: pdb_atoms Bad short name: CAT for alphabet: pdb_atoms # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS297_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_962547919.pdb -s /var/tmp/to_scwrl_962547919.seq -o /var/tmp/from_scwrl_962547919.pdb > /var/tmp/scwrl_962547919.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_962547919.pdb # conformation set from SCWRL output # naming current conformation T0284TS297_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS297_5 looking for model 1 Bad short name: CAY for alphabet: pdb_atoms Bad short name: CY for alphabet: pdb_atoms Bad short name: OY for alphabet: pdb_atoms Bad short name: NT for alphabet: pdb_atoms Bad short name: CAT for alphabet: pdb_atoms # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation T0284TS297_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1163801759.pdb -s /var/tmp/to_scwrl_1163801759.seq -o /var/tmp/from_scwrl_1163801759.pdb > /var/tmp/scwrl_1163801759.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1163801759.pdb # conformation set from SCWRL output # naming current conformation T0284TS297_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS298_1 looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation T0284TS298_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_541504802.pdb -s /var/tmp/to_scwrl_541504802.seq -o /var/tmp/from_scwrl_541504802.pdb > /var/tmp/scwrl_541504802.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_541504802.pdb # conformation set from SCWRL output # naming current conformation T0284TS298_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS298_2 looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation T0284TS298_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_634451097.pdb -s /var/tmp/to_scwrl_634451097.seq -o /var/tmp/from_scwrl_634451097.pdb > /var/tmp/scwrl_634451097.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_634451097.pdb # conformation set from SCWRL output # naming current conformation T0284TS298_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS298_3 looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS298_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1459014620.pdb -s /var/tmp/to_scwrl_1459014620.seq -o /var/tmp/from_scwrl_1459014620.pdb > /var/tmp/scwrl_1459014620.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1459014620.pdb # conformation set from SCWRL output # naming current conformation T0284TS298_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS298_4 looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation T0284TS298_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1262248019.pdb -s /var/tmp/to_scwrl_1262248019.seq -o /var/tmp/from_scwrl_1262248019.pdb > /var/tmp/scwrl_1262248019.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1262248019.pdb # conformation set from SCWRL output # naming current conformation T0284TS298_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS298_5 looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation T0284TS298_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_987407170.pdb -s /var/tmp/to_scwrl_987407170.seq -o /var/tmp/from_scwrl_987407170.pdb > /var/tmp/scwrl_987407170.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_987407170.pdb # conformation set from SCWRL output # naming current conformation T0284TS298_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS302_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS302_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1793784631.pdb -s /var/tmp/to_scwrl_1793784631.seq -o /var/tmp/from_scwrl_1793784631.pdb > /var/tmp/scwrl_1793784631.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1793784631.pdb # conformation set from SCWRL output # naming current conformation T0284TS302_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS302_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS302_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_217188688.pdb -s /var/tmp/to_scwrl_217188688.seq -o /var/tmp/from_scwrl_217188688.pdb > /var/tmp/scwrl_217188688.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_217188688.pdb # conformation set from SCWRL output # naming current conformation T0284TS302_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS302_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS302_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_585244599.pdb -s /var/tmp/to_scwrl_585244599.seq -o /var/tmp/from_scwrl_585244599.pdb > /var/tmp/scwrl_585244599.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_585244599.pdb # conformation set from SCWRL output # naming current conformation T0284TS302_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS302_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS302_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1269674492.pdb -s /var/tmp/to_scwrl_1269674492.seq -o /var/tmp/from_scwrl_1269674492.pdb > /var/tmp/scwrl_1269674492.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1269674492.pdb # conformation set from SCWRL output # naming current conformation T0284TS302_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS302_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS302_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_836605161.pdb -s /var/tmp/to_scwrl_836605161.seq -o /var/tmp/from_scwrl_836605161.pdb > /var/tmp/scwrl_836605161.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_836605161.pdb # conformation set from SCWRL output # naming current conformation T0284TS302_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS307_1 looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS307_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1724130790.pdb -s /var/tmp/to_scwrl_1724130790.seq -o /var/tmp/from_scwrl_1724130790.pdb > /var/tmp/scwrl_1724130790.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1724130790.pdb # conformation set from SCWRL output # naming current conformation T0284TS307_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS307_1u looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS307_1u # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_862694216.pdb -s /var/tmp/to_scwrl_862694216.seq -o /var/tmp/from_scwrl_862694216.pdb > /var/tmp/scwrl_862694216.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_862694216.pdb # conformation set from SCWRL output # naming current conformation T0284TS307_1u-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS307_2 looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS307_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_137818628.pdb -s /var/tmp/to_scwrl_137818628.seq -o /var/tmp/from_scwrl_137818628.pdb > /var/tmp/scwrl_137818628.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_137818628.pdb # conformation set from SCWRL output # naming current conformation T0284TS307_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS307_2u looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS307_2u # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_787959625.pdb -s /var/tmp/to_scwrl_787959625.seq -o /var/tmp/from_scwrl_787959625.pdb > /var/tmp/scwrl_787959625.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_787959625.pdb # conformation set from SCWRL output # naming current conformation T0284TS307_2u-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS307_3 looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS307_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1598415798.pdb -s /var/tmp/to_scwrl_1598415798.seq -o /var/tmp/from_scwrl_1598415798.pdb > /var/tmp/scwrl_1598415798.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1598415798.pdb # conformation set from SCWRL output # naming current conformation T0284TS307_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS307_3u looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS307_3u # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_770221918.pdb -s /var/tmp/to_scwrl_770221918.seq -o /var/tmp/from_scwrl_770221918.pdb > /var/tmp/scwrl_770221918.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_770221918.pdb # conformation set from SCWRL output # naming current conformation T0284TS307_3u-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS307_4 looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS307_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1690608758.pdb -s /var/tmp/to_scwrl_1690608758.seq -o /var/tmp/from_scwrl_1690608758.pdb > /var/tmp/scwrl_1690608758.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1690608758.pdb # conformation set from SCWRL output # naming current conformation T0284TS307_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS307_4u looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS307_4u # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1503349611.pdb -s /var/tmp/to_scwrl_1503349611.seq -o /var/tmp/from_scwrl_1503349611.pdb > /var/tmp/scwrl_1503349611.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1503349611.pdb # conformation set from SCWRL output # naming current conformation T0284TS307_4u-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS307_5 looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation T0284TS307_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1356307566.pdb -s /var/tmp/to_scwrl_1356307566.seq -o /var/tmp/from_scwrl_1356307566.pdb > /var/tmp/scwrl_1356307566.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1356307566.pdb # conformation set from SCWRL output # naming current conformation T0284TS307_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS307_5u looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS307_5u # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_142626013.pdb -s /var/tmp/to_scwrl_142626013.seq -o /var/tmp/from_scwrl_142626013.pdb > /var/tmp/scwrl_142626013.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_142626013.pdb # conformation set from SCWRL output # naming current conformation T0284TS307_5u-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS318_1 looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation T0284TS318_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1550038182.pdb -s /var/tmp/to_scwrl_1550038182.seq -o /var/tmp/from_scwrl_1550038182.pdb > /var/tmp/scwrl_1550038182.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1550038182.pdb # conformation set from SCWRL output # naming current conformation T0284TS318_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS318_2 looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation T0284TS318_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_735324203.pdb -s /var/tmp/to_scwrl_735324203.seq -o /var/tmp/from_scwrl_735324203.pdb > /var/tmp/scwrl_735324203.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_735324203.pdb # conformation set from SCWRL output # naming current conformation T0284TS318_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS318_3 looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation T0284TS318_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_2107494264.pdb -s /var/tmp/to_scwrl_2107494264.seq -o /var/tmp/from_scwrl_2107494264.pdb > /var/tmp/scwrl_2107494264.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2107494264.pdb # conformation set from SCWRL output # naming current conformation T0284TS318_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS318_4 looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS318_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1093730153.pdb -s /var/tmp/to_scwrl_1093730153.seq -o /var/tmp/from_scwrl_1093730153.pdb > /var/tmp/scwrl_1093730153.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1093730153.pdb # conformation set from SCWRL output # naming current conformation T0284TS318_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS318_5 looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation T0284TS318_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1642461832.pdb -s /var/tmp/to_scwrl_1642461832.seq -o /var/tmp/from_scwrl_1642461832.pdb > /var/tmp/scwrl_1642461832.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1642461832.pdb # conformation set from SCWRL output # naming current conformation T0284TS318_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS319_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS319_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1387150245.pdb -s /var/tmp/to_scwrl_1387150245.seq -o /var/tmp/from_scwrl_1387150245.pdb > /var/tmp/scwrl_1387150245.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1387150245.pdb # conformation set from SCWRL output # naming current conformation T0284TS319_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS319_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS319_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_2114458390.pdb -s /var/tmp/to_scwrl_2114458390.seq -o /var/tmp/from_scwrl_2114458390.pdb > /var/tmp/scwrl_2114458390.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2114458390.pdb # conformation set from SCWRL output # naming current conformation T0284TS319_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS319_3 looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation T0284TS319_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_668738123.pdb -s /var/tmp/to_scwrl_668738123.seq -o /var/tmp/from_scwrl_668738123.pdb > /var/tmp/scwrl_668738123.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_668738123.pdb # conformation set from SCWRL output # naming current conformation T0284TS319_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS319_4 looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation T0284TS319_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1821390421.pdb -s /var/tmp/to_scwrl_1821390421.seq -o /var/tmp/from_scwrl_1821390421.pdb > /var/tmp/scwrl_1821390421.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1821390421.pdb # conformation set from SCWRL output # naming current conformation T0284TS319_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS319_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS319_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_929522662.pdb -s /var/tmp/to_scwrl_929522662.seq -o /var/tmp/from_scwrl_929522662.pdb > /var/tmp/scwrl_929522662.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_929522662.pdb # conformation set from SCWRL output # naming current conformation T0284TS319_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS337_1 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS337_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1832539882.pdb -s /var/tmp/to_scwrl_1832539882.seq -o /var/tmp/from_scwrl_1832539882.pdb > /var/tmp/scwrl_1832539882.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1832539882.pdb # conformation set from SCWRL output # naming current conformation T0284TS337_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS337_2 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS337_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_215411576.pdb -s /var/tmp/to_scwrl_215411576.seq -o /var/tmp/from_scwrl_215411576.pdb > /var/tmp/scwrl_215411576.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_215411576.pdb # conformation set from SCWRL output # naming current conformation T0284TS337_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS337_3 looking for model 1 # Found a chain break before 211 # copying to AlignedFragments data structure # naming current conformation T0284TS337_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1563973759.pdb -s /var/tmp/to_scwrl_1563973759.seq -o /var/tmp/from_scwrl_1563973759.pdb > /var/tmp/scwrl_1563973759.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1563973759.pdb # conformation set from SCWRL output # naming current conformation T0284TS337_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS337_4 looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation T0284TS337_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1144070855.pdb -s /var/tmp/to_scwrl_1144070855.seq -o /var/tmp/from_scwrl_1144070855.pdb > /var/tmp/scwrl_1144070855.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1144070855.pdb # conformation set from SCWRL output # naming current conformation T0284TS337_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS337_5 looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation T0284TS337_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1477659595.pdb -s /var/tmp/to_scwrl_1477659595.seq -o /var/tmp/from_scwrl_1477659595.pdb > /var/tmp/scwrl_1477659595.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1477659595.pdb # conformation set from SCWRL output # naming current conformation T0284TS337_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS338_1 looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation T0284TS338_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_403897282.pdb -s /var/tmp/to_scwrl_403897282.seq -o /var/tmp/from_scwrl_403897282.pdb > /var/tmp/scwrl_403897282.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_403897282.pdb # conformation set from SCWRL output # naming current conformation T0284TS338_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS338_2 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS338_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_790371841.pdb -s /var/tmp/to_scwrl_790371841.seq -o /var/tmp/from_scwrl_790371841.pdb > /var/tmp/scwrl_790371841.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_790371841.pdb # conformation set from SCWRL output # naming current conformation T0284TS338_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS347_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS347_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1694848283.pdb -s /var/tmp/to_scwrl_1694848283.seq -o /var/tmp/from_scwrl_1694848283.pdb > /var/tmp/scwrl_1694848283.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1694848283.pdb # conformation set from SCWRL output # naming current conformation T0284TS347_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS349_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS349_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_989141882.pdb -s /var/tmp/to_scwrl_989141882.seq -o /var/tmp/from_scwrl_989141882.pdb > /var/tmp/scwrl_989141882.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_989141882.pdb # conformation set from SCWRL output # naming current conformation T0284TS349_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS349_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS349_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_2060046333.pdb -s /var/tmp/to_scwrl_2060046333.seq -o /var/tmp/from_scwrl_2060046333.pdb > /var/tmp/scwrl_2060046333.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2060046333.pdb # conformation set from SCWRL output # naming current conformation T0284TS349_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS349_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS349_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_383969797.pdb -s /var/tmp/to_scwrl_383969797.seq -o /var/tmp/from_scwrl_383969797.pdb > /var/tmp/scwrl_383969797.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_383969797.pdb # conformation set from SCWRL output # naming current conformation T0284TS349_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS349_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS349_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_565789025.pdb -s /var/tmp/to_scwrl_565789025.seq -o /var/tmp/from_scwrl_565789025.pdb > /var/tmp/scwrl_565789025.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_565789025.pdb # conformation set from SCWRL output # naming current conformation T0284TS349_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS349_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS349_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_775256902.pdb -s /var/tmp/to_scwrl_775256902.seq -o /var/tmp/from_scwrl_775256902.pdb > /var/tmp/scwrl_775256902.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_775256902.pdb # conformation set from SCWRL output # naming current conformation T0284TS349_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS351_1 looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation T0284TS351_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_521788425.pdb -s /var/tmp/to_scwrl_521788425.seq -o /var/tmp/from_scwrl_521788425.pdb > /var/tmp/scwrl_521788425.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_521788425.pdb # conformation set from SCWRL output # naming current conformation T0284TS351_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS351_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS351_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1353748650.pdb -s /var/tmp/to_scwrl_1353748650.seq -o /var/tmp/from_scwrl_1353748650.pdb > /var/tmp/scwrl_1353748650.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1353748650.pdb # conformation set from SCWRL output # naming current conformation T0284TS351_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS351_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS351_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_226189054.pdb -s /var/tmp/to_scwrl_226189054.seq -o /var/tmp/from_scwrl_226189054.pdb > /var/tmp/scwrl_226189054.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_226189054.pdb # conformation set from SCWRL output # naming current conformation T0284TS351_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS351_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS351_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1292010343.pdb -s /var/tmp/to_scwrl_1292010343.seq -o /var/tmp/from_scwrl_1292010343.pdb > /var/tmp/scwrl_1292010343.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1292010343.pdb # conformation set from SCWRL output # naming current conformation T0284TS351_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS351_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS351_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_896873762.pdb -s /var/tmp/to_scwrl_896873762.seq -o /var/tmp/from_scwrl_896873762.pdb > /var/tmp/scwrl_896873762.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_896873762.pdb # conformation set from SCWRL output # naming current conformation T0284TS351_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS368_1 looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation T0284TS368_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1729538665.pdb -s /var/tmp/to_scwrl_1729538665.seq -o /var/tmp/from_scwrl_1729538665.pdb > /var/tmp/scwrl_1729538665.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1729538665.pdb # conformation set from SCWRL output # naming current conformation T0284TS368_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS368_2 looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation T0284TS368_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_500834263.pdb -s /var/tmp/to_scwrl_500834263.seq -o /var/tmp/from_scwrl_500834263.pdb > /var/tmp/scwrl_500834263.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_500834263.pdb # conformation set from SCWRL output # naming current conformation T0284TS368_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS368_3 looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation T0284TS368_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1039499776.pdb -s /var/tmp/to_scwrl_1039499776.seq -o /var/tmp/from_scwrl_1039499776.pdb > /var/tmp/scwrl_1039499776.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1039499776.pdb # conformation set from SCWRL output # naming current conformation T0284TS368_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS383_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS383_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1132093200.pdb -s /var/tmp/to_scwrl_1132093200.seq -o /var/tmp/from_scwrl_1132093200.pdb > /var/tmp/scwrl_1132093200.log Error: Couldn't open file /var/tmp/from_scwrl_1132093200.pdb or /var/tmp/from_scwrl_1132093200.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1132093200_b.pdb or decoys//var/tmp/from_scwrl_1132093200_b.pdb.gz for input Trying /var/tmp/from_scwrl_1132093200_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1132093200_b.pdb or /var/tmp/from_scwrl_1132093200_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1132093200_a.pdb or decoys//var/tmp/from_scwrl_1132093200_a.pdb.gz for input Trying /var/tmp/from_scwrl_1132093200_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1132093200_a.pdb or /var/tmp/from_scwrl_1132093200_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1132093200.pdb or /var/tmp/from_scwrl_1132093200_b.pdb or /var/tmp/from_scwrl_1132093200_a.pdb Error: no new SCWRL conformation added # naming current conformation T0284TS383_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS383_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS383_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1236158465.pdb -s /var/tmp/to_scwrl_1236158465.seq -o /var/tmp/from_scwrl_1236158465.pdb > /var/tmp/scwrl_1236158465.log Error: Couldn't open file /var/tmp/from_scwrl_1236158465.pdb or /var/tmp/from_scwrl_1236158465.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1236158465_b.pdb or decoys//var/tmp/from_scwrl_1236158465_b.pdb.gz for input Trying /var/tmp/from_scwrl_1236158465_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1236158465_b.pdb or /var/tmp/from_scwrl_1236158465_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1236158465_a.pdb or decoys//var/tmp/from_scwrl_1236158465_a.pdb.gz for input Trying /var/tmp/from_scwrl_1236158465_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1236158465_a.pdb or /var/tmp/from_scwrl_1236158465_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1236158465.pdb or /var/tmp/from_scwrl_1236158465_b.pdb or /var/tmp/from_scwrl_1236158465_a.pdb Error: no new SCWRL conformation added # naming current conformation T0284TS383_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS383_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS383_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_999510393.pdb -s /var/tmp/to_scwrl_999510393.seq -o /var/tmp/from_scwrl_999510393.pdb > /var/tmp/scwrl_999510393.log Error: Couldn't open file /var/tmp/from_scwrl_999510393.pdb or /var/tmp/from_scwrl_999510393.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_999510393_b.pdb or decoys//var/tmp/from_scwrl_999510393_b.pdb.gz for input Trying /var/tmp/from_scwrl_999510393_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_999510393_b.pdb or /var/tmp/from_scwrl_999510393_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_999510393_a.pdb or decoys//var/tmp/from_scwrl_999510393_a.pdb.gz for input Trying /var/tmp/from_scwrl_999510393_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_999510393_a.pdb or /var/tmp/from_scwrl_999510393_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_999510393.pdb or /var/tmp/from_scwrl_999510393_b.pdb or /var/tmp/from_scwrl_999510393_a.pdb Error: no new SCWRL conformation added # naming current conformation T0284TS383_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS383_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS383_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_78339707.pdb -s /var/tmp/to_scwrl_78339707.seq -o /var/tmp/from_scwrl_78339707.pdb > /var/tmp/scwrl_78339707.log Error: Couldn't open file /var/tmp/from_scwrl_78339707.pdb or /var/tmp/from_scwrl_78339707.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_78339707_b.pdb or decoys//var/tmp/from_scwrl_78339707_b.pdb.gz for input Trying /var/tmp/from_scwrl_78339707_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_78339707_b.pdb or /var/tmp/from_scwrl_78339707_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_78339707_a.pdb or decoys//var/tmp/from_scwrl_78339707_a.pdb.gz for input Trying /var/tmp/from_scwrl_78339707_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_78339707_a.pdb or /var/tmp/from_scwrl_78339707_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_78339707.pdb or /var/tmp/from_scwrl_78339707_b.pdb or /var/tmp/from_scwrl_78339707_a.pdb Error: no new SCWRL conformation added # naming current conformation T0284TS383_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS383_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS383_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_731136651.pdb -s /var/tmp/to_scwrl_731136651.seq -o /var/tmp/from_scwrl_731136651.pdb > /var/tmp/scwrl_731136651.log Error: Couldn't open file /var/tmp/from_scwrl_731136651.pdb or /var/tmp/from_scwrl_731136651.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_731136651_b.pdb or decoys//var/tmp/from_scwrl_731136651_b.pdb.gz for input Trying /var/tmp/from_scwrl_731136651_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_731136651_b.pdb or /var/tmp/from_scwrl_731136651_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_731136651_a.pdb or decoys//var/tmp/from_scwrl_731136651_a.pdb.gz for input Trying /var/tmp/from_scwrl_731136651_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_731136651_a.pdb or /var/tmp/from_scwrl_731136651_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_731136651.pdb or /var/tmp/from_scwrl_731136651_b.pdb or /var/tmp/from_scwrl_731136651_a.pdb Error: no new SCWRL conformation added # naming current conformation T0284TS383_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS389_1 looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS389_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_239176991.pdb -s /var/tmp/to_scwrl_239176991.seq -o /var/tmp/from_scwrl_239176991.pdb > /var/tmp/scwrl_239176991.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_239176991.pdb # conformation set from SCWRL output # naming current conformation T0284TS389_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS389_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS389_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_45314450.pdb -s /var/tmp/to_scwrl_45314450.seq -o /var/tmp/from_scwrl_45314450.pdb > /var/tmp/scwrl_45314450.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_45314450.pdb # conformation set from SCWRL output # naming current conformation T0284TS389_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS389_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS389_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1399874774.pdb -s /var/tmp/to_scwrl_1399874774.seq -o /var/tmp/from_scwrl_1399874774.pdb > /var/tmp/scwrl_1399874774.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1399874774.pdb # conformation set from SCWRL output # naming current conformation T0284TS389_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS389_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS389_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_2060567412.pdb -s /var/tmp/to_scwrl_2060567412.seq -o /var/tmp/from_scwrl_2060567412.pdb > /var/tmp/scwrl_2060567412.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2060567412.pdb # conformation set from SCWRL output # naming current conformation T0284TS389_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS389_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS389_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_974837113.pdb -s /var/tmp/to_scwrl_974837113.seq -o /var/tmp/from_scwrl_974837113.pdb > /var/tmp/scwrl_974837113.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_974837113.pdb # conformation set from SCWRL output # naming current conformation T0284TS389_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS393_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS393_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1084931009.pdb -s /var/tmp/to_scwrl_1084931009.seq -o /var/tmp/from_scwrl_1084931009.pdb > /var/tmp/scwrl_1084931009.log Error: Couldn't open file /var/tmp/from_scwrl_1084931009.pdb or /var/tmp/from_scwrl_1084931009.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1084931009_b.pdb or decoys//var/tmp/from_scwrl_1084931009_b.pdb.gz for input Trying /var/tmp/from_scwrl_1084931009_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1084931009_b.pdb or /var/tmp/from_scwrl_1084931009_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1084931009_a.pdb or decoys//var/tmp/from_scwrl_1084931009_a.pdb.gz for input Trying /var/tmp/from_scwrl_1084931009_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1084931009_a.pdb or /var/tmp/from_scwrl_1084931009_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1084931009.pdb or /var/tmp/from_scwrl_1084931009_b.pdb or /var/tmp/from_scwrl_1084931009_a.pdb Error: no new SCWRL conformation added # naming current conformation T0284TS393_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS393_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS393_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_128495341.pdb -s /var/tmp/to_scwrl_128495341.seq -o /var/tmp/from_scwrl_128495341.pdb > /var/tmp/scwrl_128495341.log Error: Couldn't open file /var/tmp/from_scwrl_128495341.pdb or /var/tmp/from_scwrl_128495341.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_128495341_b.pdb or decoys//var/tmp/from_scwrl_128495341_b.pdb.gz for input Trying /var/tmp/from_scwrl_128495341_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_128495341_b.pdb or /var/tmp/from_scwrl_128495341_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_128495341_a.pdb or decoys//var/tmp/from_scwrl_128495341_a.pdb.gz for input Trying /var/tmp/from_scwrl_128495341_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_128495341_a.pdb or /var/tmp/from_scwrl_128495341_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_128495341.pdb or /var/tmp/from_scwrl_128495341_b.pdb or /var/tmp/from_scwrl_128495341_a.pdb Error: no new SCWRL conformation added # naming current conformation T0284TS393_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS393_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS393_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_391327225.pdb -s /var/tmp/to_scwrl_391327225.seq -o /var/tmp/from_scwrl_391327225.pdb > /var/tmp/scwrl_391327225.log Error: Couldn't open file /var/tmp/from_scwrl_391327225.pdb or /var/tmp/from_scwrl_391327225.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_391327225_b.pdb or decoys//var/tmp/from_scwrl_391327225_b.pdb.gz for input Trying /var/tmp/from_scwrl_391327225_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_391327225_b.pdb or /var/tmp/from_scwrl_391327225_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_391327225_a.pdb or decoys//var/tmp/from_scwrl_391327225_a.pdb.gz for input Trying /var/tmp/from_scwrl_391327225_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_391327225_a.pdb or /var/tmp/from_scwrl_391327225_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_391327225.pdb or /var/tmp/from_scwrl_391327225_b.pdb or /var/tmp/from_scwrl_391327225_a.pdb Error: no new SCWRL conformation added # naming current conformation T0284TS393_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS393_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS393_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_81518219.pdb -s /var/tmp/to_scwrl_81518219.seq -o /var/tmp/from_scwrl_81518219.pdb > /var/tmp/scwrl_81518219.log Error: Couldn't open file /var/tmp/from_scwrl_81518219.pdb or /var/tmp/from_scwrl_81518219.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_81518219_b.pdb or decoys//var/tmp/from_scwrl_81518219_b.pdb.gz for input Trying /var/tmp/from_scwrl_81518219_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_81518219_b.pdb or /var/tmp/from_scwrl_81518219_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_81518219_a.pdb or decoys//var/tmp/from_scwrl_81518219_a.pdb.gz for input Trying /var/tmp/from_scwrl_81518219_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_81518219_a.pdb or /var/tmp/from_scwrl_81518219_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_81518219.pdb or /var/tmp/from_scwrl_81518219_b.pdb or /var/tmp/from_scwrl_81518219_a.pdb Error: no new SCWRL conformation added # naming current conformation T0284TS393_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS393_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS393_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1606154936.pdb -s /var/tmp/to_scwrl_1606154936.seq -o /var/tmp/from_scwrl_1606154936.pdb > /var/tmp/scwrl_1606154936.log Error: Couldn't open file /var/tmp/from_scwrl_1606154936.pdb or /var/tmp/from_scwrl_1606154936.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1606154936_b.pdb or decoys//var/tmp/from_scwrl_1606154936_b.pdb.gz for input Trying /var/tmp/from_scwrl_1606154936_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1606154936_b.pdb or /var/tmp/from_scwrl_1606154936_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1606154936_a.pdb or decoys//var/tmp/from_scwrl_1606154936_a.pdb.gz for input Trying /var/tmp/from_scwrl_1606154936_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1606154936_a.pdb or /var/tmp/from_scwrl_1606154936_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1606154936.pdb or /var/tmp/from_scwrl_1606154936_b.pdb or /var/tmp/from_scwrl_1606154936_a.pdb Error: no new SCWRL conformation added # naming current conformation T0284TS393_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS401_1 looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation T0284TS401_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_795224507.pdb -s /var/tmp/to_scwrl_795224507.seq -o /var/tmp/from_scwrl_795224507.pdb > /var/tmp/scwrl_795224507.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_795224507.pdb # conformation set from SCWRL output # naming current conformation T0284TS401_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS401_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS401_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_871890060.pdb -s /var/tmp/to_scwrl_871890060.seq -o /var/tmp/from_scwrl_871890060.pdb > /var/tmp/scwrl_871890060.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_871890060.pdb # conformation set from SCWRL output # naming current conformation T0284TS401_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS401_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS401_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1153519572.pdb -s /var/tmp/to_scwrl_1153519572.seq -o /var/tmp/from_scwrl_1153519572.pdb > /var/tmp/scwrl_1153519572.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1153519572.pdb # conformation set from SCWRL output # naming current conformation T0284TS401_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS413_1 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS413_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1784366388.pdb -s /var/tmp/to_scwrl_1784366388.seq -o /var/tmp/from_scwrl_1784366388.pdb > /var/tmp/scwrl_1784366388.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1784366388.pdb # conformation set from SCWRL output # naming current conformation T0284TS413_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS413_2 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS413_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_784452746.pdb -s /var/tmp/to_scwrl_784452746.seq -o /var/tmp/from_scwrl_784452746.pdb > /var/tmp/scwrl_784452746.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_784452746.pdb # conformation set from SCWRL output # naming current conformation T0284TS413_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS413_3 looking for model 1 # Found a chain break before 230 # copying to AlignedFragments data structure # naming current conformation T0284TS413_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1537489370.pdb -s /var/tmp/to_scwrl_1537489370.seq -o /var/tmp/from_scwrl_1537489370.pdb > /var/tmp/scwrl_1537489370.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1537489370.pdb # conformation set from SCWRL output # naming current conformation T0284TS413_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS413_4 looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation T0284TS413_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_202671767.pdb -s /var/tmp/to_scwrl_202671767.seq -o /var/tmp/from_scwrl_202671767.pdb > /var/tmp/scwrl_202671767.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_202671767.pdb # conformation set from SCWRL output # naming current conformation T0284TS413_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS413_5 looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation T0284TS413_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1559709647.pdb -s /var/tmp/to_scwrl_1559709647.seq -o /var/tmp/from_scwrl_1559709647.pdb > /var/tmp/scwrl_1559709647.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1559709647.pdb # conformation set from SCWRL output # naming current conformation T0284TS413_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS414_1 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS414_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_2059277795.pdb -s /var/tmp/to_scwrl_2059277795.seq -o /var/tmp/from_scwrl_2059277795.pdb > /var/tmp/scwrl_2059277795.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2059277795.pdb # conformation set from SCWRL output # naming current conformation T0284TS414_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS414_2 looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation T0284TS414_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1556420417.pdb -s /var/tmp/to_scwrl_1556420417.seq -o /var/tmp/from_scwrl_1556420417.pdb > /var/tmp/scwrl_1556420417.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1556420417.pdb # conformation set from SCWRL output # naming current conformation T0284TS414_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS414_3 looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation T0284TS414_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1785898701.pdb -s /var/tmp/to_scwrl_1785898701.seq -o /var/tmp/from_scwrl_1785898701.pdb > /var/tmp/scwrl_1785898701.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1785898701.pdb # conformation set from SCWRL output # naming current conformation T0284TS414_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS414_4 looking for model 1 # Found a chain break before 230 # copying to AlignedFragments data structure # naming current conformation T0284TS414_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1203804491.pdb -s /var/tmp/to_scwrl_1203804491.seq -o /var/tmp/from_scwrl_1203804491.pdb > /var/tmp/scwrl_1203804491.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1203804491.pdb # conformation set from SCWRL output # naming current conformation T0284TS414_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS414_5 looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation T0284TS414_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_305810532.pdb -s /var/tmp/to_scwrl_305810532.seq -o /var/tmp/from_scwrl_305810532.pdb > /var/tmp/scwrl_305810532.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_305810532.pdb # conformation set from SCWRL output # naming current conformation T0284TS414_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS415_1 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS415_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1367953719.pdb -s /var/tmp/to_scwrl_1367953719.seq -o /var/tmp/from_scwrl_1367953719.pdb > /var/tmp/scwrl_1367953719.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1367953719.pdb # conformation set from SCWRL output # naming current conformation T0284TS415_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS415_2 looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation T0284TS415_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1704638754.pdb -s /var/tmp/to_scwrl_1704638754.seq -o /var/tmp/from_scwrl_1704638754.pdb > /var/tmp/scwrl_1704638754.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1704638754.pdb # conformation set from SCWRL output # naming current conformation T0284TS415_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS415_3 looking for model 1 # Found a chain break before 230 # copying to AlignedFragments data structure # naming current conformation T0284TS415_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1345310307.pdb -s /var/tmp/to_scwrl_1345310307.seq -o /var/tmp/from_scwrl_1345310307.pdb > /var/tmp/scwrl_1345310307.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1345310307.pdb # conformation set from SCWRL output # naming current conformation T0284TS415_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS415_4 looking for model 1 # Found a chain break before 181 # copying to AlignedFragments data structure # naming current conformation T0284TS415_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_352563273.pdb -s /var/tmp/to_scwrl_352563273.seq -o /var/tmp/from_scwrl_352563273.pdb > /var/tmp/scwrl_352563273.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_352563273.pdb # conformation set from SCWRL output # naming current conformation T0284TS415_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS415_5 looking for model 1 # Found a chain break before 233 # copying to AlignedFragments data structure # naming current conformation T0284TS415_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_793313574.pdb -s /var/tmp/to_scwrl_793313574.seq -o /var/tmp/from_scwrl_793313574.pdb > /var/tmp/scwrl_793313574.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_793313574.pdb # conformation set from SCWRL output # naming current conformation T0284TS415_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS416_1 looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS416_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_197337053.pdb -s /var/tmp/to_scwrl_197337053.seq -o /var/tmp/from_scwrl_197337053.pdb > /var/tmp/scwrl_197337053.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_197337053.pdb # conformation set from SCWRL output # naming current conformation T0284TS416_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS416_2 looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation T0284TS416_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_430902980.pdb -s /var/tmp/to_scwrl_430902980.seq -o /var/tmp/from_scwrl_430902980.pdb > /var/tmp/scwrl_430902980.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_430902980.pdb # conformation set from SCWRL output # naming current conformation T0284TS416_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS418_1 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS418_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1524450224.pdb -s /var/tmp/to_scwrl_1524450224.seq -o /var/tmp/from_scwrl_1524450224.pdb > /var/tmp/scwrl_1524450224.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1524450224.pdb # conformation set from SCWRL output # naming current conformation T0284TS418_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS420_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS420_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_436514045.pdb -s /var/tmp/to_scwrl_436514045.seq -o /var/tmp/from_scwrl_436514045.pdb > /var/tmp/scwrl_436514045.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_436514045.pdb # conformation set from SCWRL output # naming current conformation T0284TS420_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS420_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS420_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_476217431.pdb -s /var/tmp/to_scwrl_476217431.seq -o /var/tmp/from_scwrl_476217431.pdb > /var/tmp/scwrl_476217431.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_476217431.pdb # conformation set from SCWRL output # naming current conformation T0284TS420_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS420_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS420_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_776841352.pdb -s /var/tmp/to_scwrl_776841352.seq -o /var/tmp/from_scwrl_776841352.pdb > /var/tmp/scwrl_776841352.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_776841352.pdb # conformation set from SCWRL output # naming current conformation T0284TS420_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS420_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS420_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_349597810.pdb -s /var/tmp/to_scwrl_349597810.seq -o /var/tmp/from_scwrl_349597810.pdb > /var/tmp/scwrl_349597810.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_349597810.pdb # conformation set from SCWRL output # naming current conformation T0284TS420_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS420_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS420_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1451054543.pdb -s /var/tmp/to_scwrl_1451054543.seq -o /var/tmp/from_scwrl_1451054543.pdb > /var/tmp/scwrl_1451054543.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1451054543.pdb # conformation set from SCWRL output # naming current conformation T0284TS420_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS427_1 looking for model 1 # Found a chain break before 238 # copying to AlignedFragments data structure # naming current conformation T0284TS427_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1861772362.pdb -s /var/tmp/to_scwrl_1861772362.seq -o /var/tmp/from_scwrl_1861772362.pdb > /var/tmp/scwrl_1861772362.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1861772362.pdb # conformation set from SCWRL output # naming current conformation T0284TS427_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS427_2 looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # naming current conformation T0284TS427_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_478093152.pdb -s /var/tmp/to_scwrl_478093152.seq -o /var/tmp/from_scwrl_478093152.pdb > /var/tmp/scwrl_478093152.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_478093152.pdb # conformation set from SCWRL output # naming current conformation T0284TS427_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS427_3 looking for model 1 # Found a chain break before 238 # copying to AlignedFragments data structure # naming current conformation T0284TS427_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1842381768.pdb -s /var/tmp/to_scwrl_1842381768.seq -o /var/tmp/from_scwrl_1842381768.pdb > /var/tmp/scwrl_1842381768.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1842381768.pdb # conformation set from SCWRL output # naming current conformation T0284TS427_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS427_4 looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation T0284TS427_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1943290581.pdb -s /var/tmp/to_scwrl_1943290581.seq -o /var/tmp/from_scwrl_1943290581.pdb > /var/tmp/scwrl_1943290581.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1943290581.pdb # conformation set from SCWRL output # naming current conformation T0284TS427_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS427_5 looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation T0284TS427_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_2084248088.pdb -s /var/tmp/to_scwrl_2084248088.seq -o /var/tmp/from_scwrl_2084248088.pdb > /var/tmp/scwrl_2084248088.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2084248088.pdb # conformation set from SCWRL output # naming current conformation T0284TS427_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS435_1 looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation T0284TS435_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_490122628.pdb -s /var/tmp/to_scwrl_490122628.seq -o /var/tmp/from_scwrl_490122628.pdb > /var/tmp/scwrl_490122628.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_490122628.pdb # conformation set from SCWRL output # naming current conformation T0284TS435_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS435_2 looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation T0284TS435_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_667696994.pdb -s /var/tmp/to_scwrl_667696994.seq -o /var/tmp/from_scwrl_667696994.pdb > /var/tmp/scwrl_667696994.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_667696994.pdb # conformation set from SCWRL output # naming current conformation T0284TS435_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS435_3 looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation T0284TS435_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1090284014.pdb -s /var/tmp/to_scwrl_1090284014.seq -o /var/tmp/from_scwrl_1090284014.pdb > /var/tmp/scwrl_1090284014.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1090284014.pdb # conformation set from SCWRL output # naming current conformation T0284TS435_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS435_4 looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS435_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_127005370.pdb -s /var/tmp/to_scwrl_127005370.seq -o /var/tmp/from_scwrl_127005370.pdb > /var/tmp/scwrl_127005370.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_127005370.pdb # conformation set from SCWRL output # naming current conformation T0284TS435_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS435_5 looking for model 1 # Found a chain break before 166 # copying to AlignedFragments data structure # naming current conformation T0284TS435_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1452149739.pdb -s /var/tmp/to_scwrl_1452149739.seq -o /var/tmp/from_scwrl_1452149739.pdb > /var/tmp/scwrl_1452149739.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1452149739.pdb # conformation set from SCWRL output # naming current conformation T0284TS435_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS439_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS439_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_480289738.pdb -s /var/tmp/to_scwrl_480289738.seq -o /var/tmp/from_scwrl_480289738.pdb > /var/tmp/scwrl_480289738.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_480289738.pdb # conformation set from SCWRL output # naming current conformation T0284TS439_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS443_1 looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation T0284TS443_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_329677137.pdb -s /var/tmp/to_scwrl_329677137.seq -o /var/tmp/from_scwrl_329677137.pdb > /var/tmp/scwrl_329677137.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_329677137.pdb # conformation set from SCWRL output # naming current conformation T0284TS443_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS468_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS468_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_864375740.pdb -s /var/tmp/to_scwrl_864375740.seq -o /var/tmp/from_scwrl_864375740.pdb > /var/tmp/scwrl_864375740.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_864375740.pdb # conformation set from SCWRL output # naming current conformation T0284TS468_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS469_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS469_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_392083886.pdb -s /var/tmp/to_scwrl_392083886.seq -o /var/tmp/from_scwrl_392083886.pdb > /var/tmp/scwrl_392083886.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_392083886.pdb # conformation set from SCWRL output # naming current conformation T0284TS469_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS469_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS469_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1886097554.pdb -s /var/tmp/to_scwrl_1886097554.seq -o /var/tmp/from_scwrl_1886097554.pdb > /var/tmp/scwrl_1886097554.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1886097554.pdb # conformation set from SCWRL output # naming current conformation T0284TS469_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS469_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS469_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_502790795.pdb -s /var/tmp/to_scwrl_502790795.seq -o /var/tmp/from_scwrl_502790795.pdb > /var/tmp/scwrl_502790795.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_502790795.pdb # conformation set from SCWRL output # naming current conformation T0284TS469_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS469_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS469_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1595888378.pdb -s /var/tmp/to_scwrl_1595888378.seq -o /var/tmp/from_scwrl_1595888378.pdb > /var/tmp/scwrl_1595888378.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1595888378.pdb # conformation set from SCWRL output # naming current conformation T0284TS469_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS469_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS469_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_44424439.pdb -s /var/tmp/to_scwrl_44424439.seq -o /var/tmp/from_scwrl_44424439.pdb > /var/tmp/scwrl_44424439.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_44424439.pdb # conformation set from SCWRL output # naming current conformation T0284TS469_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS490_1 looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # naming current conformation T0284TS490_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1870744514.pdb -s /var/tmp/to_scwrl_1870744514.seq -o /var/tmp/from_scwrl_1870744514.pdb > /var/tmp/scwrl_1870744514.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1870744514.pdb # conformation set from SCWRL output # naming current conformation T0284TS490_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS502_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS502_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1153043485.pdb -s /var/tmp/to_scwrl_1153043485.seq -o /var/tmp/from_scwrl_1153043485.pdb > /var/tmp/scwrl_1153043485.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1153043485.pdb # conformation set from SCWRL output # naming current conformation T0284TS502_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS511_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS511_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1389734747.pdb -s /var/tmp/to_scwrl_1389734747.seq -o /var/tmp/from_scwrl_1389734747.pdb > /var/tmp/scwrl_1389734747.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1389734747.pdb # conformation set from SCWRL output # naming current conformation T0284TS511_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS527_1 looking for model 1 Bad short name: OT1 for alphabet: pdb_atoms Bad short name: OT2 for alphabet: pdb_atoms # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS527_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_75824141.pdb -s /var/tmp/to_scwrl_75824141.seq -o /var/tmp/from_scwrl_75824141.pdb > /var/tmp/scwrl_75824141.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_75824141.pdb # conformation set from SCWRL output # naming current conformation T0284TS527_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS536_1 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS536_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1946357059.pdb -s /var/tmp/to_scwrl_1946357059.seq -o /var/tmp/from_scwrl_1946357059.pdb > /var/tmp/scwrl_1946357059.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1946357059.pdb # conformation set from SCWRL output # naming current conformation T0284TS536_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS536_2 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS536_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1587071800.pdb -s /var/tmp/to_scwrl_1587071800.seq -o /var/tmp/from_scwrl_1587071800.pdb > /var/tmp/scwrl_1587071800.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1587071800.pdb # conformation set from SCWRL output # naming current conformation T0284TS536_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS536_3 looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation T0284TS536_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_506727121.pdb -s /var/tmp/to_scwrl_506727121.seq -o /var/tmp/from_scwrl_506727121.pdb > /var/tmp/scwrl_506727121.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_506727121.pdb # conformation set from SCWRL output # naming current conformation T0284TS536_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS536_4 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS536_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1323323637.pdb -s /var/tmp/to_scwrl_1323323637.seq -o /var/tmp/from_scwrl_1323323637.pdb > /var/tmp/scwrl_1323323637.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1323323637.pdb # conformation set from SCWRL output # naming current conformation T0284TS536_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS536_5 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS536_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_2023585845.pdb -s /var/tmp/to_scwrl_2023585845.seq -o /var/tmp/from_scwrl_2023585845.pdb > /var/tmp/scwrl_2023585845.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2023585845.pdb # conformation set from SCWRL output # naming current conformation T0284TS536_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS550_1 looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation T0284TS550_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_982944552.pdb -s /var/tmp/to_scwrl_982944552.seq -o /var/tmp/from_scwrl_982944552.pdb > /var/tmp/scwrl_982944552.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_982944552.pdb # conformation set from SCWRL output # naming current conformation T0284TS550_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS550_2 looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation T0284TS550_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_2100164989.pdb -s /var/tmp/to_scwrl_2100164989.seq -o /var/tmp/from_scwrl_2100164989.pdb > /var/tmp/scwrl_2100164989.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2100164989.pdb # conformation set from SCWRL output # naming current conformation T0284TS550_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS550_3 looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation T0284TS550_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_225700009.pdb -s /var/tmp/to_scwrl_225700009.seq -o /var/tmp/from_scwrl_225700009.pdb > /var/tmp/scwrl_225700009.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_225700009.pdb # conformation set from SCWRL output # naming current conformation T0284TS550_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS556_1 looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation T0284TS556_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_286515448.pdb -s /var/tmp/to_scwrl_286515448.seq -o /var/tmp/from_scwrl_286515448.pdb > /var/tmp/scwrl_286515448.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_286515448.pdb # conformation set from SCWRL output # naming current conformation T0284TS556_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS556_2 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS556_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1814453704.pdb -s /var/tmp/to_scwrl_1814453704.seq -o /var/tmp/from_scwrl_1814453704.pdb > /var/tmp/scwrl_1814453704.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1814453704.pdb # conformation set from SCWRL output # naming current conformation T0284TS556_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS556_3 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS556_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_703793161.pdb -s /var/tmp/to_scwrl_703793161.seq -o /var/tmp/from_scwrl_703793161.pdb > /var/tmp/scwrl_703793161.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_703793161.pdb # conformation set from SCWRL output # naming current conformation T0284TS556_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS556_4 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS556_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_2128897216.pdb -s /var/tmp/to_scwrl_2128897216.seq -o /var/tmp/from_scwrl_2128897216.pdb > /var/tmp/scwrl_2128897216.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2128897216.pdb # conformation set from SCWRL output # naming current conformation T0284TS556_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS556_5 looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation T0284TS556_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1610260638.pdb -s /var/tmp/to_scwrl_1610260638.seq -o /var/tmp/from_scwrl_1610260638.pdb > /var/tmp/scwrl_1610260638.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1610260638.pdb # conformation set from SCWRL output # naming current conformation T0284TS556_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS568_1 looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation T0284TS568_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_640557602.pdb -s /var/tmp/to_scwrl_640557602.seq -o /var/tmp/from_scwrl_640557602.pdb > /var/tmp/scwrl_640557602.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_640557602.pdb # conformation set from SCWRL output # naming current conformation T0284TS568_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS568_2 looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS568_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_471536198.pdb -s /var/tmp/to_scwrl_471536198.seq -o /var/tmp/from_scwrl_471536198.pdb > /var/tmp/scwrl_471536198.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_471536198.pdb # conformation set from SCWRL output # naming current conformation T0284TS568_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS568_3 looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS568_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_130473985.pdb -s /var/tmp/to_scwrl_130473985.seq -o /var/tmp/from_scwrl_130473985.pdb > /var/tmp/scwrl_130473985.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_130473985.pdb # conformation set from SCWRL output # naming current conformation T0284TS568_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS568_4 looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation T0284TS568_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1730841616.pdb -s /var/tmp/to_scwrl_1730841616.seq -o /var/tmp/from_scwrl_1730841616.pdb > /var/tmp/scwrl_1730841616.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1730841616.pdb # conformation set from SCWRL output # naming current conformation T0284TS568_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS568_5 looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS568_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_598541568.pdb -s /var/tmp/to_scwrl_598541568.seq -o /var/tmp/from_scwrl_598541568.pdb > /var/tmp/scwrl_598541568.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_598541568.pdb # conformation set from SCWRL output # naming current conformation T0284TS568_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS601_1 looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation T0284TS601_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1582623724.pdb -s /var/tmp/to_scwrl_1582623724.seq -o /var/tmp/from_scwrl_1582623724.pdb > /var/tmp/scwrl_1582623724.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1582623724.pdb # conformation set from SCWRL output # naming current conformation T0284TS601_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS601_2 looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # naming current conformation T0284TS601_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_63647707.pdb -s /var/tmp/to_scwrl_63647707.seq -o /var/tmp/from_scwrl_63647707.pdb > /var/tmp/scwrl_63647707.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_63647707.pdb # conformation set from SCWRL output # naming current conformation T0284TS601_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS601_3 looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation T0284TS601_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_928218705.pdb -s /var/tmp/to_scwrl_928218705.seq -o /var/tmp/from_scwrl_928218705.pdb > /var/tmp/scwrl_928218705.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_928218705.pdb # conformation set from SCWRL output # naming current conformation T0284TS601_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS601_4 looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation T0284TS601_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_299515818.pdb -s /var/tmp/to_scwrl_299515818.seq -o /var/tmp/from_scwrl_299515818.pdb > /var/tmp/scwrl_299515818.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_299515818.pdb # conformation set from SCWRL output # naming current conformation T0284TS601_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS601_5 looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation T0284TS601_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_455731594.pdb -s /var/tmp/to_scwrl_455731594.seq -o /var/tmp/from_scwrl_455731594.pdb > /var/tmp/scwrl_455731594.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_455731594.pdb # conformation set from SCWRL output # naming current conformation T0284TS601_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS640_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS640_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_666832612.pdb -s /var/tmp/to_scwrl_666832612.seq -o /var/tmp/from_scwrl_666832612.pdb > /var/tmp/scwrl_666832612.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_666832612.pdb # conformation set from SCWRL output # naming current conformation T0284TS640_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS641_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS641_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_802306613.pdb -s /var/tmp/to_scwrl_802306613.seq -o /var/tmp/from_scwrl_802306613.pdb > /var/tmp/scwrl_802306613.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_802306613.pdb # conformation set from SCWRL output # naming current conformation T0284TS641_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS650_1 looking for model 1 # Found a chain break before 54 # copying to AlignedFragments data structure # naming current conformation T0284TS650_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_2051619972.pdb -s /var/tmp/to_scwrl_2051619972.seq -o /var/tmp/from_scwrl_2051619972.pdb > /var/tmp/scwrl_2051619972.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2051619972.pdb # conformation set from SCWRL output # naming current conformation T0284TS650_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS651_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS651_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_711257051.pdb -s /var/tmp/to_scwrl_711257051.seq -o /var/tmp/from_scwrl_711257051.pdb > /var/tmp/scwrl_711257051.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_711257051.pdb # conformation set from SCWRL output # naming current conformation T0284TS651_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS654_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS654_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_525567480.pdb -s /var/tmp/to_scwrl_525567480.seq -o /var/tmp/from_scwrl_525567480.pdb > /var/tmp/scwrl_525567480.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_525567480.pdb # conformation set from SCWRL output # naming current conformation T0284TS654_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS658_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS658_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1057179811.pdb -s /var/tmp/to_scwrl_1057179811.seq -o /var/tmp/from_scwrl_1057179811.pdb > /var/tmp/scwrl_1057179811.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1057179811.pdb # conformation set from SCWRL output # naming current conformation T0284TS658_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS659_1u looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS659_1u # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_2100991798.pdb -s /var/tmp/to_scwrl_2100991798.seq -o /var/tmp/from_scwrl_2100991798.pdb > /var/tmp/scwrl_2100991798.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2100991798.pdb # conformation set from SCWRL output # naming current conformation T0284TS659_1u-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS659_2u looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS659_2u # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_601391621.pdb -s /var/tmp/to_scwrl_601391621.seq -o /var/tmp/from_scwrl_601391621.pdb > /var/tmp/scwrl_601391621.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_601391621.pdb # conformation set from SCWRL output # naming current conformation T0284TS659_2u-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS659_3u looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS659_3u # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_856053224.pdb -s /var/tmp/to_scwrl_856053224.seq -o /var/tmp/from_scwrl_856053224.pdb > /var/tmp/scwrl_856053224.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_856053224.pdb # conformation set from SCWRL output # naming current conformation T0284TS659_3u-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS664_1 looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation T0284TS664_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1540579952.pdb -s /var/tmp/to_scwrl_1540579952.seq -o /var/tmp/from_scwrl_1540579952.pdb > /var/tmp/scwrl_1540579952.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1540579952.pdb # conformation set from SCWRL output # naming current conformation T0284TS664_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS664_2 looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS664_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1108118742.pdb -s /var/tmp/to_scwrl_1108118742.seq -o /var/tmp/from_scwrl_1108118742.pdb > /var/tmp/scwrl_1108118742.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1108118742.pdb # conformation set from SCWRL output # naming current conformation T0284TS664_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS664_3 looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation T0284TS664_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_31893214.pdb -s /var/tmp/to_scwrl_31893214.seq -o /var/tmp/from_scwrl_31893214.pdb > /var/tmp/scwrl_31893214.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_31893214.pdb # conformation set from SCWRL output # naming current conformation T0284TS664_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS664_4 looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation T0284TS664_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1416682150.pdb -s /var/tmp/to_scwrl_1416682150.seq -o /var/tmp/from_scwrl_1416682150.pdb > /var/tmp/scwrl_1416682150.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1416682150.pdb # conformation set from SCWRL output # naming current conformation T0284TS664_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS664_5 looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation T0284TS664_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_2091063294.pdb -s /var/tmp/to_scwrl_2091063294.seq -o /var/tmp/from_scwrl_2091063294.pdb > /var/tmp/scwrl_2091063294.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2091063294.pdb # conformation set from SCWRL output # naming current conformation T0284TS664_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS671_1 looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation T0284TS671_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_2132058203.pdb -s /var/tmp/to_scwrl_2132058203.seq -o /var/tmp/from_scwrl_2132058203.pdb > /var/tmp/scwrl_2132058203.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2132058203.pdb # conformation set from SCWRL output # naming current conformation T0284TS671_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS671_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS671_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1642382159.pdb -s /var/tmp/to_scwrl_1642382159.seq -o /var/tmp/from_scwrl_1642382159.pdb > /var/tmp/scwrl_1642382159.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1642382159.pdb # conformation set from SCWRL output # naming current conformation T0284TS671_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS671_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS671_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_230095096.pdb -s /var/tmp/to_scwrl_230095096.seq -o /var/tmp/from_scwrl_230095096.pdb > /var/tmp/scwrl_230095096.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_230095096.pdb # conformation set from SCWRL output # naming current conformation T0284TS671_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS671_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS671_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1799028261.pdb -s /var/tmp/to_scwrl_1799028261.seq -o /var/tmp/from_scwrl_1799028261.pdb > /var/tmp/scwrl_1799028261.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1799028261.pdb # conformation set from SCWRL output # naming current conformation T0284TS671_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS671_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS671_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_198691673.pdb -s /var/tmp/to_scwrl_198691673.seq -o /var/tmp/from_scwrl_198691673.pdb > /var/tmp/scwrl_198691673.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_198691673.pdb # conformation set from SCWRL output # naming current conformation T0284TS671_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS675_1 looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation T0284TS675_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_211508665.pdb -s /var/tmp/to_scwrl_211508665.seq -o /var/tmp/from_scwrl_211508665.pdb > /var/tmp/scwrl_211508665.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_211508665.pdb # conformation set from SCWRL output # naming current conformation T0284TS675_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS675_2 looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation T0284TS675_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1261805252.pdb -s /var/tmp/to_scwrl_1261805252.seq -o /var/tmp/from_scwrl_1261805252.pdb > /var/tmp/scwrl_1261805252.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1261805252.pdb # conformation set from SCWRL output # naming current conformation T0284TS675_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS675_3 looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS675_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_839249276.pdb -s /var/tmp/to_scwrl_839249276.seq -o /var/tmp/from_scwrl_839249276.pdb > /var/tmp/scwrl_839249276.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_839249276.pdb # conformation set from SCWRL output # naming current conformation T0284TS675_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS675_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS675_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_683044863.pdb -s /var/tmp/to_scwrl_683044863.seq -o /var/tmp/from_scwrl_683044863.pdb > /var/tmp/scwrl_683044863.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_683044863.pdb # conformation set from SCWRL output # naming current conformation T0284TS675_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS675_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS675_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1392279238.pdb -s /var/tmp/to_scwrl_1392279238.seq -o /var/tmp/from_scwrl_1392279238.pdb > /var/tmp/scwrl_1392279238.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1392279238.pdb # conformation set from SCWRL output # naming current conformation T0284TS675_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS677_1 looking for model 1 WARNING: atom 1421 has residue number 190 < previous residue 287 in predictions/T0284TS677_1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS677_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_422607245.pdb -s /var/tmp/to_scwrl_422607245.seq -o /var/tmp/from_scwrl_422607245.pdb > /var/tmp/scwrl_422607245.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_422607245.pdb # conformation set from SCWRL output # naming current conformation T0284TS677_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS677_2 looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS677_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1281586430.pdb -s /var/tmp/to_scwrl_1281586430.seq -o /var/tmp/from_scwrl_1281586430.pdb > /var/tmp/scwrl_1281586430.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1281586430.pdb # conformation set from SCWRL output # naming current conformation T0284TS677_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS698_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS698_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_827419316.pdb -s /var/tmp/to_scwrl_827419316.seq -o /var/tmp/from_scwrl_827419316.pdb > /var/tmp/scwrl_827419316.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_827419316.pdb # conformation set from SCWRL output # naming current conformation T0284TS698_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS710_1 looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation T0284TS710_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_486254953.pdb -s /var/tmp/to_scwrl_486254953.seq -o /var/tmp/from_scwrl_486254953.pdb > /var/tmp/scwrl_486254953.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_486254953.pdb # conformation set from SCWRL output # naming current conformation T0284TS710_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS710_2 looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS710_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_62321488.pdb -s /var/tmp/to_scwrl_62321488.seq -o /var/tmp/from_scwrl_62321488.pdb > /var/tmp/scwrl_62321488.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_62321488.pdb # conformation set from SCWRL output # naming current conformation T0284TS710_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS710_3 looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS710_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1126935133.pdb -s /var/tmp/to_scwrl_1126935133.seq -o /var/tmp/from_scwrl_1126935133.pdb > /var/tmp/scwrl_1126935133.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1126935133.pdb # conformation set from SCWRL output # naming current conformation T0284TS710_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS710_4 looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation T0284TS710_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_941986547.pdb -s /var/tmp/to_scwrl_941986547.seq -o /var/tmp/from_scwrl_941986547.pdb > /var/tmp/scwrl_941986547.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_941986547.pdb # conformation set from SCWRL output # naming current conformation T0284TS710_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS710_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS710_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_729154100.pdb -s /var/tmp/to_scwrl_729154100.seq -o /var/tmp/from_scwrl_729154100.pdb > /var/tmp/scwrl_729154100.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_729154100.pdb # conformation set from SCWRL output # naming current conformation T0284TS710_5-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS721_1 looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation T0284TS721_1 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1929241746.pdb -s /var/tmp/to_scwrl_1929241746.seq -o /var/tmp/from_scwrl_1929241746.pdb > /var/tmp/scwrl_1929241746.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1929241746.pdb # conformation set from SCWRL output # naming current conformation T0284TS721_1-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS721_2 looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # naming current conformation T0284TS721_2 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_846122872.pdb -s /var/tmp/to_scwrl_846122872.seq -o /var/tmp/from_scwrl_846122872.pdb > /var/tmp/scwrl_846122872.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_846122872.pdb # conformation set from SCWRL output # naming current conformation T0284TS721_2-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS721_3 looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation T0284TS721_3 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1440411151.pdb -s /var/tmp/to_scwrl_1440411151.seq -o /var/tmp/from_scwrl_1440411151.pdb > /var/tmp/scwrl_1440411151.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1440411151.pdb # conformation set from SCWRL output # naming current conformation T0284TS721_3-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS721_4 looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation T0284TS721_4 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_307325580.pdb -s /var/tmp/to_scwrl_307325580.seq -o /var/tmp/from_scwrl_307325580.pdb > /var/tmp/scwrl_307325580.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_307325580.pdb # conformation set from SCWRL output # naming current conformation T0284TS721_4-scwrl # ReadConformPDB reading from PDB file predictions/T0284TS721_5 looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # naming current conformation T0284TS721_5 # request to SCWRL produces command: ulimit -t 259 ; scwrl3 -i /var/tmp/to_scwrl_1903302682.pdb -s /var/tmp/to_scwrl_1903302682.seq -o /var/tmp/from_scwrl_1903302682.pdb > /var/tmp/scwrl_1903302682.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1903302682.pdb # conformation set from SCWRL output # naming current conformation T0284TS721_5-scwrl # command:CPU_time= 93.553 sec, elapsed time= 1415.494 sec. # command:mkdir -p decoys rm decoys/read-predictions.under cd decoys; shopt -s nullglob ; for x in predictions/*; do \ echo ReadConformPDB $x >> read-predictions.under ; \ y=${x%.pdb.gz} ; \ z=${y#predictions/} ; \ echo NameConform $z >> read-predictions.under ; \ done cd decoys; shopt -s nullglob ; for x in predictions-scwrl/*; do \ echo ReadConformPDB $x >> read-predictions.under ; \ y=${x%.pdb.gz} ; \ z=${y#predictions-scwrl/} ; \ echo NameConform $z >> read-predictions.under ; \ done chgrp protein decoys/read-predictions.under chmod g+w decoys/read-predictions.under rm -f decoys/predictions.real-cost.rdb sed -e s/XXX0000/T0284/ -e s/START_COL/1/ \ -e 's/include COSTFCN.costfcn//g' \ -e s/evaluate.COSTFCN.rdb/real-cost.rdb/g \ -e s/_domain// \ -e s/read-pdb/read-predictions/ \ -e s/REAL_PDB/1oqfA/ \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/predictions.evaluate.under \ | nice -2 /projects/compbio/papers/protein-structure/MQA-tau/source_code/karplus/undertaker/undertaker # command:# Seed set to 1216311116 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # #computed average backbone with maximum peptide_sq_deviance = 0.002 # computed average trans backbone unit from 8101 examples # computed average trans backbone unit before proline from 332 examples # computed average cis backbone unit from 20 examples # trans (non-proline) backbone unit: # CA= -2.2101 1.0129 -0.0033 # O= -0.1508 2.2440 0.0016 # C= -0.6897 1.1364 -0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4583 -0.0000 -0.0000 # cis backbone unit: # CA= -0.1438 2.4522 0.0007 # O= -2.0283 0.9702 0.0005 # C= -0.8017 1.0759 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4664 -0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2110 1.0636 -0.0014 # O= -0.1234 2.2469 0.0075 # C= -0.6877 1.1518 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4665 0.0000 0.0000 # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 111048 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 685 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 6.666 sec, elapsed time= 6.703 sec. # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5.000 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.500 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.500 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.500 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.650 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.900 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8.000 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10.000 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12.000 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 4 alphabets and 0 BackgroundProbs from alpha.alphabet # command:CPU_time= 6.750 sec, elapsed time= 6.804 sec. # command:# Prefix for input files set to # command:# Making conformation for sequence T0284 numbered 1 through 287 Created new target T0284 from T0284.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:1oqfA expands to /projects/compbio/data/pdb/1oqf.pdb.gz 1oqfA: Read 290 residues and 2206 atoms. # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50.000 * real_hbond + 50.000 * real_hbond_u + 50.000 * decoy_hbond + 50.000 * decoy_hbond_u + 10.000 * real_NO_hbond + 10.000 * real_NO_hbond_u + 10.000 * decoy_NO_hbond + 10.000 * decoy_NO_hbond_u + 200.000 * clens + 0.000 * rmsd + 35.000 * log_rmsd + 0.000 * rmsd_ca + 30.000 * log_rmsd_ca + 1.000 * GDT + 1.000 * smooth_GDT + 0.000 * missing_atoms ) # command:# SetCost created cost = # ) # command:CPU_time= 9.660 sec, elapsed time= 9.739 sec. # command:# Prefix for input files set to decoys/ # command:# reading script from file read-predictions.under # ReadConformPDB reading from PDB file predictions/RT0284TS239_1 looking for model 1 WARNING: atom 1 has residue number 1 < previous residue 287 in predictions/RT0284TS239_1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation RT0284TS239_1 # ReadConformPDB reading from PDB file predictions/RT0284TS239_3 looking for model 1 WARNING: atom 1 has residue number 1 < previous residue 287 in predictions/RT0284TS239_3 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation RT0284TS239_3 # ReadConformPDB reading from PDB file predictions/T0284AL044_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL044_1 # ReadConformPDB reading from PDB file predictions/T0284AL044_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL044_2 # ReadConformPDB reading from PDB file predictions/T0284AL044_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL044_3 # ReadConformPDB reading from PDB file predictions/T0284AL044_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL044_4 # ReadConformPDB reading from PDB file predictions/T0284AL044_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL044_5 # ReadConformPDB reading from PDB file predictions/T0284AL170_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL170_1 # ReadConformPDB reading from PDB file predictions/T0284AL170_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL170_2 # ReadConformPDB reading from PDB file predictions/T0284AL170_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL170_3 # ReadConformPDB reading from PDB file predictions/T0284AL170_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL170_4 # ReadConformPDB reading from PDB file predictions/T0284AL170_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL170_5 # ReadConformPDB reading from PDB file predictions/T0284AL242_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL242_1 # ReadConformPDB reading from PDB file predictions/T0284AL242_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL242_2 # ReadConformPDB reading from PDB file predictions/T0284AL242_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL242_3 # ReadConformPDB reading from PDB file predictions/T0284AL242_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL242_4 # ReadConformPDB reading from PDB file predictions/T0284AL242_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL242_5 # ReadConformPDB reading from PDB file predictions/T0284AL243_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL243_1 # ReadConformPDB reading from PDB file predictions/T0284AL243_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL243_2 # ReadConformPDB reading from PDB file predictions/T0284AL243_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL243_3 # ReadConformPDB reading from PDB file predictions/T0284AL243_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL243_5 # ReadConformPDB reading from PDB file predictions/T0284AL257_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL257_1 # ReadConformPDB reading from PDB file predictions/T0284AL257_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL257_2 # ReadConformPDB reading from PDB file predictions/T0284AL257_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL257_3 # ReadConformPDB reading from PDB file predictions/T0284AL257_4 looking for model 1 # choosing archetypes in rotamer library # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284AL257_4 # ReadConformPDB reading from PDB file predictions/T0284AL257_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL257_5 # ReadConformPDB reading from PDB file predictions/T0284AL316_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL316_1 # ReadConformPDB reading from PDB file predictions/T0284AL316_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL316_2 # ReadConformPDB reading from PDB file predictions/T0284AL316_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284AL316_3 # ReadConformPDB reading from PDB file predictions/T0284AL316_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL316_4 # ReadConformPDB reading from PDB file predictions/T0284AL316_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL316_5 # ReadConformPDB reading from PDB file predictions/T0284AL380_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL380_1 # ReadConformPDB reading from PDB file predictions/T0284AL380_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL380_2 # ReadConformPDB reading from PDB file predictions/T0284AL380_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL380_3 # ReadConformPDB reading from PDB file predictions/T0284AL380_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL380_4 # ReadConformPDB reading from PDB file predictions/T0284AL380_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL380_5 # ReadConformPDB reading from PDB file predictions/T0284AL381_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL381_1 # ReadConformPDB reading from PDB file predictions/T0284AL381_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL381_2 # ReadConformPDB reading from PDB file predictions/T0284AL381_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL381_3 # ReadConformPDB reading from PDB file predictions/T0284AL381_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL381_4 # ReadConformPDB reading from PDB file predictions/T0284AL381_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL381_5 # ReadConformPDB reading from PDB file predictions/T0284AL556_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL556_1 # ReadConformPDB reading from PDB file predictions/T0284AL556_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL556_2 # ReadConformPDB reading from PDB file predictions/T0284AL556_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL556_3 # ReadConformPDB reading from PDB file predictions/T0284AL556_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL556_4 # ReadConformPDB reading from PDB file predictions/T0284AL556_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL556_5 # ReadConformPDB reading from PDB file predictions/T0284AL706_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL706_1 # ReadConformPDB reading from PDB file predictions/T0284TS005_1 looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS005_1 # ReadConformPDB reading from PDB file predictions/T0284TS010_1 looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation T0284TS010_1 # ReadConformPDB reading from PDB file predictions/T0284TS010_2 looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation T0284TS010_2 # ReadConformPDB reading from PDB file predictions/T0284TS010_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS010_3 # ReadConformPDB reading from PDB file predictions/T0284TS010_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS010_4 # ReadConformPDB reading from PDB file predictions/T0284TS010_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS010_5 # ReadConformPDB reading from PDB file predictions/T0284TS011_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS011_1 # ReadConformPDB reading from PDB file predictions/T0284TS013_1 looking for model 1 Bad short name: O1 for alphabet: pdb_atoms Bad short name: O2 for alphabet: pdb_atoms # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS013_1 # ReadConformPDB reading from PDB file predictions/T0284TS020_1 looking for model 1 # Found a chain break before 256 # copying to AlignedFragments data structure # naming current conformation T0284TS020_1 # ReadConformPDB reading from PDB file predictions/T0284TS020_2 looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation T0284TS020_2 # ReadConformPDB reading from PDB file predictions/T0284TS020_3 looking for model 1 # Found a chain break before 166 # copying to AlignedFragments data structure # naming current conformation T0284TS020_3 # ReadConformPDB reading from PDB file predictions/T0284TS020_4 looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation T0284TS020_4 # ReadConformPDB reading from PDB file predictions/T0284TS020_5 looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation T0284TS020_5 # ReadConformPDB reading from PDB file predictions/T0284TS021_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS021_1 # ReadConformPDB reading from PDB file predictions/T0284TS022_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS022_1 # ReadConformPDB reading from PDB file predictions/T0284TS022_2 looking for model 1 # Found a chain break before 180 # copying to AlignedFragments data structure # naming current conformation T0284TS022_2 # ReadConformPDB reading from PDB file predictions/T0284TS022_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS022_3 # ReadConformPDB reading from PDB file predictions/T0284TS022_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS022_4 # ReadConformPDB reading from PDB file predictions/T0284TS022_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS022_5 # ReadConformPDB reading from PDB file predictions/T0284TS024_1 looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation T0284TS024_1 # ReadConformPDB reading from PDB file predictions/T0284TS024_2 looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation T0284TS024_2 # ReadConformPDB reading from PDB file predictions/T0284TS024_3 looking for model 1 # Found a chain break before 232 # copying to AlignedFragments data structure # naming current conformation T0284TS024_3 # ReadConformPDB reading from PDB file predictions/T0284TS024_4 looking for model 1 # Found a chain break before 231 # copying to AlignedFragments data structure # naming current conformation T0284TS024_4 # ReadConformPDB reading from PDB file predictions/T0284TS024_5 looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation T0284TS024_5 # ReadConformPDB reading from PDB file predictions/T0284TS025_1 looking for model 1 # Found a chain break before 203 # copying to AlignedFragments data structure # naming current conformation T0284TS025_1 # ReadConformPDB reading from PDB file predictions/T0284TS025_2 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS025_2 # ReadConformPDB reading from PDB file predictions/T0284TS025_3 looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation T0284TS025_3 # ReadConformPDB reading from PDB file predictions/T0284TS025_4 looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation T0284TS025_4 # ReadConformPDB reading from PDB file predictions/T0284TS025_5 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS025_5 # ReadConformPDB reading from PDB file predictions/T0284TS026_1 looking for model 1 # naming current conformation T0284TS026_1 # ReadConformPDB reading from PDB file predictions/T0284TS026_2 looking for model 1 # naming current conformation T0284TS026_2 # ReadConformPDB reading from PDB file predictions/T0284TS026_3 looking for model 1 # naming current conformation T0284TS026_3 # ReadConformPDB reading from PDB file predictions/T0284TS026_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS026_4 # ReadConformPDB reading from PDB file predictions/T0284TS026_5 looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation T0284TS026_5 # ReadConformPDB reading from PDB file predictions/T0284TS027_1 looking for model 1 # naming current conformation T0284TS027_1 # ReadConformPDB reading from PDB file predictions/T0284TS027_2 looking for model 1 # naming current conformation T0284TS027_2 # ReadConformPDB reading from PDB file predictions/T0284TS027_3 looking for model 1 # naming current conformation T0284TS027_3 # ReadConformPDB reading from PDB file predictions/T0284TS027_4 looking for model 1 # naming current conformation T0284TS027_4 # ReadConformPDB reading from PDB file predictions/T0284TS027_5 looking for model 1 # naming current conformation T0284TS027_5 # ReadConformPDB reading from PDB file predictions/T0284TS028_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS028_1 # ReadConformPDB reading from PDB file predictions/T0284TS028_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS028_2 # ReadConformPDB reading from PDB file predictions/T0284TS028_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS028_3 # ReadConformPDB reading from PDB file predictions/T0284TS028_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS028_4 # ReadConformPDB reading from PDB file predictions/T0284TS028_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS028_5 # ReadConformPDB reading from PDB file predictions/T0284TS034_1 looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation T0284TS034_1 # ReadConformPDB reading from PDB file predictions/T0284TS034_2 looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation T0284TS034_2 # ReadConformPDB reading from PDB file predictions/T0284TS034_3 looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation T0284TS034_3 # ReadConformPDB reading from PDB file predictions/T0284TS034_4 looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation T0284TS034_4 # ReadConformPDB reading from PDB file predictions/T0284TS034_5 looking for model 1 # Found a chain break before 265 # copying to AlignedFragments data structure # naming current conformation T0284TS034_5 # ReadConformPDB reading from PDB file predictions/T0284TS035_1 looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation T0284TS035_1 # ReadConformPDB reading from PDB file predictions/T0284TS035_2 looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation T0284TS035_2 # ReadConformPDB reading from PDB file predictions/T0284TS035_3 looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation T0284TS035_3 # ReadConformPDB reading from PDB file predictions/T0284TS035_4 looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation T0284TS035_4 # ReadConformPDB reading from PDB file predictions/T0284TS035_5 looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation T0284TS035_5 # ReadConformPDB reading from PDB file predictions/T0284TS038_1 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS038_1 # ReadConformPDB reading from PDB file predictions/T0284TS038_2 looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation T0284TS038_2 # ReadConformPDB reading from PDB file predictions/T0284TS038_3 looking for model 1 # Found a chain break before 255 # copying to AlignedFragments data structure # naming current conformation T0284TS038_3 # ReadConformPDB reading from PDB file predictions/T0284TS046_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS046_1 # ReadConformPDB reading from PDB file predictions/T0284TS046_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS046_2 # ReadConformPDB reading from PDB file predictions/T0284TS046_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS046_3 # ReadConformPDB reading from PDB file predictions/T0284TS046_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS046_4 # ReadConformPDB reading from PDB file predictions/T0284TS046_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS046_5 # ReadConformPDB reading from PDB file predictions/T0284TS047_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS047_1 # ReadConformPDB reading from PDB file predictions/T0284TS047_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS047_2 # ReadConformPDB reading from PDB file predictions/T0284TS047_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS047_3 # ReadConformPDB reading from PDB file predictions/T0284TS047_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS047_4 # ReadConformPDB reading from PDB file predictions/T0284TS047_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS047_5 # ReadConformPDB reading from PDB file predictions/T0284TS050_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS050_1 # ReadConformPDB reading from PDB file predictions/T0284TS050_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS050_2 # ReadConformPDB reading from PDB file predictions/T0284TS050_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS050_3 # ReadConformPDB reading from PDB file predictions/T0284TS050_4 looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # naming current conformation T0284TS050_4 # ReadConformPDB reading from PDB file predictions/T0284TS050_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS050_5 # ReadConformPDB reading from PDB file predictions/T0284TS054_1 looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS054_1 # ReadConformPDB reading from PDB file predictions/T0284TS060_1 looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation T0284TS060_1 # ReadConformPDB reading from PDB file predictions/T0284TS060_2 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS060_2 # ReadConformPDB reading from PDB file predictions/T0284TS060_3 looking for model 1 # Found a chain break before 255 # copying to AlignedFragments data structure # naming current conformation T0284TS060_3 # ReadConformPDB reading from PDB file predictions/T0284TS060_4 looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation T0284TS060_4 # ReadConformPDB reading from PDB file predictions/T0284TS060_5 looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation T0284TS060_5 # ReadConformPDB reading from PDB file predictions/T0284TS063_1 looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation T0284TS063_1 # ReadConformPDB reading from PDB file predictions/T0284TS063_2 looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation T0284TS063_2 # ReadConformPDB reading from PDB file predictions/T0284TS063_3 looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation T0284TS063_3 # ReadConformPDB reading from PDB file predictions/T0284TS063_4 looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation T0284TS063_4 # ReadConformPDB reading from PDB file predictions/T0284TS064_1 looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation T0284TS064_1 # ReadConformPDB reading from PDB file predictions/T0284TS071_1 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS071_1 # ReadConformPDB reading from PDB file predictions/T0284TS071_2 looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation T0284TS071_2 # ReadConformPDB reading from PDB file predictions/T0284TS071_3 looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS071_3 # ReadConformPDB reading from PDB file predictions/T0284TS071_4 looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation T0284TS071_4 # ReadConformPDB reading from PDB file predictions/T0284TS071_5 looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation T0284TS071_5 # ReadConformPDB reading from PDB file predictions/T0284TS074_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS074_1 # ReadConformPDB reading from PDB file predictions/T0284TS074_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS074_2 # ReadConformPDB reading from PDB file predictions/T0284TS074_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS074_3 # ReadConformPDB reading from PDB file predictions/T0284TS083_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS083_1 # ReadConformPDB reading from PDB file predictions/T0284TS083_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS083_2 # ReadConformPDB reading from PDB file predictions/T0284TS083_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS083_3 # ReadConformPDB reading from PDB file predictions/T0284TS083_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS083_4 # ReadConformPDB reading from PDB file predictions/T0284TS083_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS083_5 # ReadConformPDB reading from PDB file predictions/T0284TS087_1 looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # naming current conformation T0284TS087_1 # ReadConformPDB reading from PDB file predictions/T0284TS087_2 looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # naming current conformation T0284TS087_2 # ReadConformPDB reading from PDB file predictions/T0284TS087_3 looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # naming current conformation T0284TS087_3 # ReadConformPDB reading from PDB file predictions/T0284TS087_4 looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # naming current conformation T0284TS087_4 # ReadConformPDB reading from PDB file predictions/T0284TS087_5 looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # naming current conformation T0284TS087_5 # ReadConformPDB reading from PDB file predictions/T0284TS091_1 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS091_1 # ReadConformPDB reading from PDB file predictions/T0284TS091_2 looking for model 1 # Found a chain break before 238 # copying to AlignedFragments data structure # naming current conformation T0284TS091_2 # ReadConformPDB reading from PDB file predictions/T0284TS091_3 looking for model 1 # Found a chain break before 207 # copying to AlignedFragments data structure # naming current conformation T0284TS091_3 # ReadConformPDB reading from PDB file predictions/T0284TS091_4 looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation T0284TS091_4 # ReadConformPDB reading from PDB file predictions/T0284TS091_5 looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation T0284TS091_5 # ReadConformPDB reading from PDB file predictions/T0284TS092_1 looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation T0284TS092_1 # ReadConformPDB reading from PDB file predictions/T0284TS092_2 looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation T0284TS092_2 # ReadConformPDB reading from PDB file predictions/T0284TS092_3 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS092_3 # ReadConformPDB reading from PDB file predictions/T0284TS092_4 looking for model 1 # Found a chain break before 205 # copying to AlignedFragments data structure # naming current conformation T0284TS092_4 # ReadConformPDB reading from PDB file predictions/T0284TS092_5 looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation T0284TS092_5 # ReadConformPDB reading from PDB file predictions/T0284TS102_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS102_1 # ReadConformPDB reading from PDB file predictions/T0284TS102_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS102_2 # ReadConformPDB reading from PDB file predictions/T0284TS102_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS102_3 # ReadConformPDB reading from PDB file predictions/T0284TS102_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS102_4 # ReadConformPDB reading from PDB file predictions/T0284TS102_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS102_5 # ReadConformPDB reading from PDB file predictions/T0284TS103_1 looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation T0284TS103_1 # ReadConformPDB reading from PDB file predictions/T0284TS105_1 looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation T0284TS105_1 # ReadConformPDB reading from PDB file predictions/T0284TS105_2 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS105_2 # ReadConformPDB reading from PDB file predictions/T0284TS105_3 looking for model 1 # naming current conformation T0284TS105_3 # ReadConformPDB reading from PDB file predictions/T0284TS105_4 looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation T0284TS105_4 # ReadConformPDB reading from PDB file predictions/T0284TS105_5 looking for model 1 # Found a chain break before 202 # copying to AlignedFragments data structure # naming current conformation T0284TS105_5 # ReadConformPDB reading from PDB file predictions/T0284TS111_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS111_1 # ReadConformPDB reading from PDB file predictions/T0284TS111_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS111_2 # ReadConformPDB reading from PDB file predictions/T0284TS111_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS111_3 # ReadConformPDB reading from PDB file predictions/T0284TS111_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS111_4 # ReadConformPDB reading from PDB file predictions/T0284TS113_1 looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation T0284TS113_1 # ReadConformPDB reading from PDB file predictions/T0284TS113_2 looking for model 1 # Found a chain break before 11 # copying to AlignedFragments data structure # naming current conformation T0284TS113_2 # ReadConformPDB reading from PDB file predictions/T0284TS113_3 looking for model 1 # Found a chain break before 233 # copying to AlignedFragments data structure # naming current conformation T0284TS113_3 # ReadConformPDB reading from PDB file predictions/T0284TS113_4 looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation T0284TS113_4 # ReadConformPDB reading from PDB file predictions/T0284TS113_5 looking for model 1 # Found a chain break before 205 # copying to AlignedFragments data structure # naming current conformation T0284TS113_5 # ReadConformPDB reading from PDB file predictions/T0284TS125_1 looking for model 1 # Found a chain break before 255 # copying to AlignedFragments data structure # naming current conformation T0284TS125_1 # ReadConformPDB reading from PDB file predictions/T0284TS125_1u looking for model 1 Error: Reading chain '' from PDB file predictions/T0284TS125_1u failed---no such chain. # naming current conformation T0284TS125_1u # ReadConformPDB reading from PDB file predictions/T0284TS125_2 looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS125_2 # ReadConformPDB reading from PDB file predictions/T0284TS125_2u looking for model 1 Error: Reading chain '' from PDB file predictions/T0284TS125_2u failed---no such chain. # naming current conformation T0284TS125_2u # ReadConformPDB reading from PDB file predictions/T0284TS125_3 looking for model 1 # Found a chain break before 257 # copying to AlignedFragments data structure # naming current conformation T0284TS125_3 # ReadConformPDB reading from PDB file predictions/T0284TS125_3u looking for model 1 Error: Reading chain '' from PDB file predictions/T0284TS125_3u failed---no such chain. # naming current conformation T0284TS125_3u # ReadConformPDB reading from PDB file predictions/T0284TS125_4 looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS125_4 # ReadConformPDB reading from PDB file predictions/T0284TS125_4u looking for model 1 Error: Reading chain '' from PDB file predictions/T0284TS125_4u failed---no such chain. # naming current conformation T0284TS125_4u # ReadConformPDB reading from PDB file predictions/T0284TS125_5 looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation T0284TS125_5 # ReadConformPDB reading from PDB file predictions/T0284TS125_5u looking for model 1 Error: Reading chain '' from PDB file predictions/T0284TS125_5u failed---no such chain. # naming current conformation T0284TS125_5u # ReadConformPDB reading from PDB file predictions/T0284TS132_1 looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS132_1 # ReadConformPDB reading from PDB file predictions/T0284TS135_1 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS135_1 # ReadConformPDB reading from PDB file predictions/T0284TS136_1 looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation T0284TS136_1 # ReadConformPDB reading from PDB file predictions/T0284TS136_2 looking for model 1 # Found a chain break before 210 # copying to AlignedFragments data structure # naming current conformation T0284TS136_2 # ReadConformPDB reading from PDB file predictions/T0284TS136_3 looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation T0284TS136_3 # ReadConformPDB reading from PDB file predictions/T0284TS136_4 looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation T0284TS136_4 # ReadConformPDB reading from PDB file predictions/T0284TS136_5 looking for model 1 # Found a chain break before 261 # copying to AlignedFragments data structure # naming current conformation T0284TS136_5 # ReadConformPDB reading from PDB file predictions/T0284TS137_1 looking for model 1 # Found a chain break before 268 # copying to AlignedFragments data structure # naming current conformation T0284TS137_1 # ReadConformPDB reading from PDB file predictions/T0284TS137_2 looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation T0284TS137_2 # ReadConformPDB reading from PDB file predictions/T0284TS137_3 looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation T0284TS137_3 # ReadConformPDB reading from PDB file predictions/T0284TS137_4 looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation T0284TS137_4 # ReadConformPDB reading from PDB file predictions/T0284TS137_5 looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation T0284TS137_5 # ReadConformPDB reading from PDB file predictions/T0284TS139_1 looking for model 1 # Found a chain break before 231 # copying to AlignedFragments data structure # naming current conformation T0284TS139_1 # ReadConformPDB reading from PDB file predictions/T0284TS139_2 looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation T0284TS139_2 # ReadConformPDB reading from PDB file predictions/T0284TS139_3 looking for model 1 # Found a chain break before 127 # copying to AlignedFragments data structure # naming current conformation T0284TS139_3 # ReadConformPDB reading from PDB file predictions/T0284TS139_4 looking for model 1 # Found a chain break before 255 # copying to AlignedFragments data structure # naming current conformation T0284TS139_4 # ReadConformPDB reading from PDB file predictions/T0284TS139_5 looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS139_5 # ReadConformPDB reading from PDB file predictions/T0284TS168_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS168_1 # ReadConformPDB reading from PDB file predictions/T0284TS168_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS168_2 # ReadConformPDB reading from PDB file predictions/T0284TS168_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS168_3 # ReadConformPDB reading from PDB file predictions/T0284TS168_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS168_4 # ReadConformPDB reading from PDB file predictions/T0284TS168_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS168_5 # ReadConformPDB reading from PDB file predictions/T0284TS178_1 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS178_1 # ReadConformPDB reading from PDB file predictions/T0284TS178_2 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS178_2 # ReadConformPDB reading from PDB file predictions/T0284TS178_3 looking for model 1 # Found a chain break before 227 # copying to AlignedFragments data structure # naming current conformation T0284TS178_3 # ReadConformPDB reading from PDB file predictions/T0284TS178_4 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS178_4 # ReadConformPDB reading from PDB file predictions/T0284TS178_5 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS178_5 # ReadConformPDB reading from PDB file predictions/T0284TS179_1 looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation T0284TS179_1 # ReadConformPDB reading from PDB file predictions/T0284TS179_2 looking for model 1 # Found a chain break before 254 # copying to AlignedFragments data structure # naming current conformation T0284TS179_2 # ReadConformPDB reading from PDB file predictions/T0284TS179_3 looking for model 1 # Found a chain break before 254 # copying to AlignedFragments data structure # naming current conformation T0284TS179_3 # ReadConformPDB reading from PDB file predictions/T0284TS179_4 looking for model 1 # Found a chain break before 254 # copying to AlignedFragments data structure # naming current conformation T0284TS179_4 # ReadConformPDB reading from PDB file predictions/T0284TS179_5 looking for model 1 # Found a chain break before 246 # copying to AlignedFragments data structure # naming current conformation T0284TS179_5 # ReadConformPDB reading from PDB file predictions/T0284TS186_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS186_1 # ReadConformPDB reading from PDB file predictions/T0284TS186_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS186_2 # ReadConformPDB reading from PDB file predictions/T0284TS186_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS186_3 # ReadConformPDB reading from PDB file predictions/T0284TS186_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS186_4 # ReadConformPDB reading from PDB file predictions/T0284TS186_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS186_5 # ReadConformPDB reading from PDB file predictions/T0284TS193_1 looking for model 1 WARNING: atoms too close: (T0284)G213.O and (T0284)N214.N only 0 apart, perturbing (T0284)N214.N # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation T0284TS193_1 # ReadConformPDB reading from PDB file predictions/T0284TS197_1 looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS197_1 # ReadConformPDB reading from PDB file predictions/T0284TS197_2 looking for model 1 # Found a chain break before 261 # copying to AlignedFragments data structure # naming current conformation T0284TS197_2 # ReadConformPDB reading from PDB file predictions/T0284TS197_3 looking for model 1 # Found a chain break before 205 # copying to AlignedFragments data structure # naming current conformation T0284TS197_3 # ReadConformPDB reading from PDB file predictions/T0284TS197_4 looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS197_4 # ReadConformPDB reading from PDB file predictions/T0284TS197_5 looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS197_5 # ReadConformPDB reading from PDB file predictions/T0284TS203_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS203_1 # ReadConformPDB reading from PDB file predictions/T0284TS203_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS203_2 # ReadConformPDB reading from PDB file predictions/T0284TS203_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS203_4 # ReadConformPDB reading from PDB file predictions/T0284TS203_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS203_5 # ReadConformPDB reading from PDB file predictions/T0284TS205_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS205_1 # ReadConformPDB reading from PDB file predictions/T0284TS205_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS205_2 # ReadConformPDB reading from PDB file predictions/T0284TS205_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS205_3 # ReadConformPDB reading from PDB file predictions/T0284TS205_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS205_4 # ReadConformPDB reading from PDB file predictions/T0284TS205_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS205_5 # ReadConformPDB reading from PDB file predictions/T0284TS209_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS209_1 # ReadConformPDB reading from PDB file predictions/T0284TS209_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS209_2 # ReadConformPDB reading from PDB file predictions/T0284TS209_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS209_3 # ReadConformPDB reading from PDB file predictions/T0284TS209_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS209_4 # ReadConformPDB reading from PDB file predictions/T0284TS209_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS209_5 # ReadConformPDB reading from PDB file predictions/T0284TS211_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS211_1 # ReadConformPDB reading from PDB file predictions/T0284TS211_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS211_2 # ReadConformPDB reading from PDB file predictions/T0284TS211_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS211_3 # ReadConformPDB reading from PDB file predictions/T0284TS211_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS211_4 # ReadConformPDB reading from PDB file predictions/T0284TS211_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS211_5 # ReadConformPDB reading from PDB file predictions/T0284TS212_1 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS212_1 # ReadConformPDB reading from PDB file predictions/T0284TS213_1 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS213_1 # ReadConformPDB reading from PDB file predictions/T0284TS214_1 looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation T0284TS214_1 # ReadConformPDB reading from PDB file predictions/T0284TS224_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS224_1 # ReadConformPDB reading from PDB file predictions/T0284TS234_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS234_1 # ReadConformPDB reading from PDB file predictions/T0284TS239_1_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS239_1_1 # ReadConformPDB reading from PDB file predictions/T0284TS239_1_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS239_1_2 # ReadConformPDB reading from PDB file predictions/T0284TS239_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS239_2 # ReadConformPDB reading from PDB file predictions/T0284TS239_3_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS239_3_1 # ReadConformPDB reading from PDB file predictions/T0284TS239_3_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS239_3_2 # ReadConformPDB reading from PDB file predictions/T0284TS239_3_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS239_3_3 # ReadConformPDB reading from PDB file predictions/T0284TS239_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS239_4 # ReadConformPDB reading from PDB file predictions/T0284TS239_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS239_5 # ReadConformPDB reading from PDB file predictions/T0284TS245_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS245_1 # ReadConformPDB reading from PDB file predictions/T0284TS247_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS247_1 # ReadConformPDB reading from PDB file predictions/T0284TS247_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS247_2 # ReadConformPDB reading from PDB file predictions/T0284TS247_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS247_3 # ReadConformPDB reading from PDB file predictions/T0284TS247_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS247_4 # ReadConformPDB reading from PDB file predictions/T0284TS247_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS247_5 # ReadConformPDB reading from PDB file predictions/T0284TS248_1 looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation T0284TS248_1 # ReadConformPDB reading from PDB file predictions/T0284TS248_2 looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # naming current conformation T0284TS248_2 # ReadConformPDB reading from PDB file predictions/T0284TS248_3 looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # naming current conformation T0284TS248_3 # ReadConformPDB reading from PDB file predictions/T0284TS248_4 looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation T0284TS248_4 # ReadConformPDB reading from PDB file predictions/T0284TS248_5 looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation T0284TS248_5 # ReadConformPDB reading from PDB file predictions/T0284TS249_1 looking for model 1 # naming current conformation T0284TS249_1 # ReadConformPDB reading from PDB file predictions/T0284TS250_1 looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation T0284TS250_1 # ReadConformPDB reading from PDB file predictions/T0284TS250_2 looking for model 1 # Found a chain break before 227 # copying to AlignedFragments data structure # naming current conformation T0284TS250_2 # ReadConformPDB reading from PDB file predictions/T0284TS250_3 looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS250_3 # ReadConformPDB reading from PDB file predictions/T0284TS250_4 looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation T0284TS250_4 # ReadConformPDB reading from PDB file predictions/T0284TS250_5 looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation T0284TS250_5 # ReadConformPDB reading from PDB file predictions/T0284TS261_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS261_1 # ReadConformPDB reading from PDB file predictions/T0284TS267_1 looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation T0284TS267_1 # ReadConformPDB reading from PDB file predictions/T0284TS267_2 looking for model 1 # Found a chain break before 181 # copying to AlignedFragments data structure # naming current conformation T0284TS267_2 # ReadConformPDB reading from PDB file predictions/T0284TS267_3 looking for model 1 # Found a chain break before 206 # copying to AlignedFragments data structure # naming current conformation T0284TS267_3 # ReadConformPDB reading from PDB file predictions/T0284TS267_4 looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation T0284TS267_4 # ReadConformPDB reading from PDB file predictions/T0284TS267_5 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS267_5 # ReadConformPDB reading from PDB file predictions/T0284TS268_1 looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation T0284TS268_1 # ReadConformPDB reading from PDB file predictions/T0284TS268_2 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS268_2 # ReadConformPDB reading from PDB file predictions/T0284TS268_3 looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation T0284TS268_3 # ReadConformPDB reading from PDB file predictions/T0284TS268_4 looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation T0284TS268_4 # ReadConformPDB reading from PDB file predictions/T0284TS268_5 looking for model 1 # Found a chain break before 210 # copying to AlignedFragments data structure # naming current conformation T0284TS268_5 # ReadConformPDB reading from PDB file predictions/T0284TS273_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS273_1 # ReadConformPDB reading from PDB file predictions/T0284TS274_1 looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation T0284TS274_1 # ReadConformPDB reading from PDB file predictions/T0284TS275_1 looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS275_1 # ReadConformPDB reading from PDB file predictions/T0284TS276_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS276_1 # ReadConformPDB reading from PDB file predictions/T0284TS276_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS276_2 # ReadConformPDB reading from PDB file predictions/T0284TS276_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS276_3 # ReadConformPDB reading from PDB file predictions/T0284TS276_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS276_4 # ReadConformPDB reading from PDB file predictions/T0284TS276_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS276_5 # ReadConformPDB reading from PDB file predictions/T0284TS277_1 looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation T0284TS277_1 # ReadConformPDB reading from PDB file predictions/T0284TS277_2 looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation T0284TS277_2 # ReadConformPDB reading from PDB file predictions/T0284TS277_3 looking for model 1 # Found a chain break before 261 # copying to AlignedFragments data structure # naming current conformation T0284TS277_3 # ReadConformPDB reading from PDB file predictions/T0284TS277_4 looking for model 1 # Found a chain break before 262 # copying to AlignedFragments data structure # naming current conformation T0284TS277_4 # ReadConformPDB reading from PDB file predictions/T0284TS277_5 looking for model 1 # Found a chain break before 257 # copying to AlignedFragments data structure # naming current conformation T0284TS277_5 # ReadConformPDB reading from PDB file predictions/T0284TS297_1 looking for model 1 Bad short name: CAY for alphabet: pdb_atoms Bad short name: CY for alphabet: pdb_atoms Bad short name: OY for alphabet: pdb_atoms Bad short name: NT for alphabet: pdb_atoms Bad short name: CAT for alphabet: pdb_atoms # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS297_1 # ReadConformPDB reading from PDB file predictions/T0284TS297_2 looking for model 1 Bad short name: CAY for alphabet: pdb_atoms Bad short name: CY for alphabet: pdb_atoms Bad short name: OY for alphabet: pdb_atoms Bad short name: NT for alphabet: pdb_atoms Bad short name: CAT for alphabet: pdb_atoms Bad short name: CAY for alphabet: pdb_atoms Bad short name: CY for alphabet: pdb_atoms Bad short name: OY for alphabet: pdb_atoms Bad short name: NT for alphabet: pdb_atoms Bad short name: CAT for alphabet: pdb_atoms # Found a chain break before 226 # copying to AlignedFragments data structure # naming current conformation T0284TS297_2 # ReadConformPDB reading from PDB file predictions/T0284TS297_3 looking for model 1 Bad short name: CAY for alphabet: pdb_atoms Bad short name: CY for alphabet: pdb_atoms Bad short name: OY for alphabet: pdb_atoms Bad short name: NT for alphabet: pdb_atoms Bad short name: CAT for alphabet: pdb_atoms # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS297_3 # ReadConformPDB reading from PDB file predictions/T0284TS297_4 looking for model 1 Bad short name: CAY for alphabet: pdb_atoms Bad short name: CY for alphabet: pdb_atoms Bad short name: OY for alphabet: pdb_atoms Bad short name: NT for alphabet: pdb_atoms Bad short name: CAT for alphabet: pdb_atoms # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS297_4 # ReadConformPDB reading from PDB file predictions/T0284TS297_5 looking for model 1 Bad short name: CAY for alphabet: pdb_atoms Bad short name: CY for alphabet: pdb_atoms Bad short name: OY for alphabet: pdb_atoms Bad short name: NT for alphabet: pdb_atoms Bad short name: CAT for alphabet: pdb_atoms # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation T0284TS297_5 # ReadConformPDB reading from PDB file predictions/T0284TS298_1 looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation T0284TS298_1 # ReadConformPDB reading from PDB file predictions/T0284TS298_2 looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation T0284TS298_2 # ReadConformPDB reading from PDB file predictions/T0284TS298_3 looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS298_3 # ReadConformPDB reading from PDB file predictions/T0284TS298_4 looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation T0284TS298_4 # ReadConformPDB reading from PDB file predictions/T0284TS298_5 looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation T0284TS298_5 # ReadConformPDB reading from PDB file predictions/T0284TS302_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS302_1 # ReadConformPDB reading from PDB file predictions/T0284TS302_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS302_2 # ReadConformPDB reading from PDB file predictions/T0284TS302_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS302_3 # ReadConformPDB reading from PDB file predictions/T0284TS302_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS302_4 # ReadConformPDB reading from PDB file predictions/T0284TS302_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS302_5 # ReadConformPDB reading from PDB file predictions/T0284TS307_1 looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS307_1 # ReadConformPDB reading from PDB file predictions/T0284TS307_1u looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS307_1u # ReadConformPDB reading from PDB file predictions/T0284TS307_2 looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS307_2 # ReadConformPDB reading from PDB file predictions/T0284TS307_2u looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS307_2u # ReadConformPDB reading from PDB file predictions/T0284TS307_3 looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS307_3 # ReadConformPDB reading from PDB file predictions/T0284TS307_3u looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS307_3u # ReadConformPDB reading from PDB file predictions/T0284TS307_4 looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS307_4 # ReadConformPDB reading from PDB file predictions/T0284TS307_4u looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS307_4u # ReadConformPDB reading from PDB file predictions/T0284TS307_5 looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation T0284TS307_5 # ReadConformPDB reading from PDB file predictions/T0284TS307_5u looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS307_5u # ReadConformPDB reading from PDB file predictions/T0284TS318_1 looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation T0284TS318_1 # ReadConformPDB reading from PDB file predictions/T0284TS318_2 looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation T0284TS318_2 # ReadConformPDB reading from PDB file predictions/T0284TS318_3 looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation T0284TS318_3 # ReadConformPDB reading from PDB file predictions/T0284TS318_4 looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS318_4 # ReadConformPDB reading from PDB file predictions/T0284TS318_5 looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation T0284TS318_5 # ReadConformPDB reading from PDB file predictions/T0284TS319_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS319_1 # ReadConformPDB reading from PDB file predictions/T0284TS319_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS319_2 # ReadConformPDB reading from PDB file predictions/T0284TS319_3 looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation T0284TS319_3 # ReadConformPDB reading from PDB file predictions/T0284TS319_4 looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation T0284TS319_4 # ReadConformPDB reading from PDB file predictions/T0284TS319_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS319_5 # ReadConformPDB reading from PDB file predictions/T0284TS337_1 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS337_1 # ReadConformPDB reading from PDB file predictions/T0284TS337_2 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS337_2 # ReadConformPDB reading from PDB file predictions/T0284TS337_3 looking for model 1 # Found a chain break before 211 # copying to AlignedFragments data structure # naming current conformation T0284TS337_3 # ReadConformPDB reading from PDB file predictions/T0284TS337_4 looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation T0284TS337_4 # ReadConformPDB reading from PDB file predictions/T0284TS337_5 looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation T0284TS337_5 # ReadConformPDB reading from PDB file predictions/T0284TS338_1 looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation T0284TS338_1 # ReadConformPDB reading from PDB file predictions/T0284TS338_2 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS338_2 # ReadConformPDB reading from PDB file predictions/T0284TS347_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS347_1 # ReadConformPDB reading from PDB file predictions/T0284TS349_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS349_1 # ReadConformPDB reading from PDB file predictions/T0284TS349_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS349_2 # ReadConformPDB reading from PDB file predictions/T0284TS349_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS349_3 # ReadConformPDB reading from PDB file predictions/T0284TS349_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS349_4 # ReadConformPDB reading from PDB file predictions/T0284TS349_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS349_5 # ReadConformPDB reading from PDB file predictions/T0284TS351_1 looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation T0284TS351_1 # ReadConformPDB reading from PDB file predictions/T0284TS351_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS351_2 # ReadConformPDB reading from PDB file predictions/T0284TS351_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS351_3 # ReadConformPDB reading from PDB file predictions/T0284TS351_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS351_4 # ReadConformPDB reading from PDB file predictions/T0284TS351_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS351_5 # ReadConformPDB reading from PDB file predictions/T0284TS368_1 looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation T0284TS368_1 # ReadConformPDB reading from PDB file predictions/T0284TS368_2 looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation T0284TS368_2 # ReadConformPDB reading from PDB file predictions/T0284TS368_3 looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation T0284TS368_3 # ReadConformPDB reading from PDB file predictions/T0284TS383_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS383_1 # ReadConformPDB reading from PDB file predictions/T0284TS383_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS383_2 # ReadConformPDB reading from PDB file predictions/T0284TS383_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS383_3 # ReadConformPDB reading from PDB file predictions/T0284TS383_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS383_4 # ReadConformPDB reading from PDB file predictions/T0284TS383_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS383_5 # ReadConformPDB reading from PDB file predictions/T0284TS389_1 looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS389_1 # ReadConformPDB reading from PDB file predictions/T0284TS389_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS389_2 # ReadConformPDB reading from PDB file predictions/T0284TS389_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS389_3 # ReadConformPDB reading from PDB file predictions/T0284TS389_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS389_4 # ReadConformPDB reading from PDB file predictions/T0284TS389_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS389_5 # ReadConformPDB reading from PDB file predictions/T0284TS393_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS393_1 # ReadConformPDB reading from PDB file predictions/T0284TS393_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS393_2 # ReadConformPDB reading from PDB file predictions/T0284TS393_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS393_3 # ReadConformPDB reading from PDB file predictions/T0284TS393_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS393_4 # ReadConformPDB reading from PDB file predictions/T0284TS393_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS393_5 # ReadConformPDB reading from PDB file predictions/T0284TS401_1 looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation T0284TS401_1 # ReadConformPDB reading from PDB file predictions/T0284TS401_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS401_2 # ReadConformPDB reading from PDB file predictions/T0284TS401_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS401_3 # ReadConformPDB reading from PDB file predictions/T0284TS413_1 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS413_1 # ReadConformPDB reading from PDB file predictions/T0284TS413_2 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS413_2 # ReadConformPDB reading from PDB file predictions/T0284TS413_3 looking for model 1 # Found a chain break before 230 # copying to AlignedFragments data structure # naming current conformation T0284TS413_3 # ReadConformPDB reading from PDB file predictions/T0284TS413_4 looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation T0284TS413_4 # ReadConformPDB reading from PDB file predictions/T0284TS413_5 looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation T0284TS413_5 # ReadConformPDB reading from PDB file predictions/T0284TS414_1 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS414_1 # ReadConformPDB reading from PDB file predictions/T0284TS414_2 looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation T0284TS414_2 # ReadConformPDB reading from PDB file predictions/T0284TS414_3 looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation T0284TS414_3 # ReadConformPDB reading from PDB file predictions/T0284TS414_4 looking for model 1 # Found a chain break before 230 # copying to AlignedFragments data structure # naming current conformation T0284TS414_4 # ReadConformPDB reading from PDB file predictions/T0284TS414_5 looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation T0284TS414_5 # ReadConformPDB reading from PDB file predictions/T0284TS415_1 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS415_1 # ReadConformPDB reading from PDB file predictions/T0284TS415_2 looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation T0284TS415_2 # ReadConformPDB reading from PDB file predictions/T0284TS415_3 looking for model 1 # Found a chain break before 230 # copying to AlignedFragments data structure # naming current conformation T0284TS415_3 # ReadConformPDB reading from PDB file predictions/T0284TS415_4 looking for model 1 # Found a chain break before 181 # copying to AlignedFragments data structure # naming current conformation T0284TS415_4 # ReadConformPDB reading from PDB file predictions/T0284TS415_5 looking for model 1 # Found a chain break before 233 # copying to AlignedFragments data structure # naming current conformation T0284TS415_5 # ReadConformPDB reading from PDB file predictions/T0284TS416_1 looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS416_1 # ReadConformPDB reading from PDB file predictions/T0284TS416_2 looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation T0284TS416_2 # ReadConformPDB reading from PDB file predictions/T0284TS418_1 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS418_1 # ReadConformPDB reading from PDB file predictions/T0284TS420_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS420_1 # ReadConformPDB reading from PDB file predictions/T0284TS420_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS420_2 # ReadConformPDB reading from PDB file predictions/T0284TS420_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS420_3 # ReadConformPDB reading from PDB file predictions/T0284TS420_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS420_4 # ReadConformPDB reading from PDB file predictions/T0284TS420_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS420_5 # ReadConformPDB reading from PDB file predictions/T0284TS427_1 looking for model 1 # Found a chain break before 238 # copying to AlignedFragments data structure # naming current conformation T0284TS427_1 # ReadConformPDB reading from PDB file predictions/T0284TS427_2 looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # naming current conformation T0284TS427_2 # ReadConformPDB reading from PDB file predictions/T0284TS427_3 looking for model 1 # Found a chain break before 238 # copying to AlignedFragments data structure # naming current conformation T0284TS427_3 # ReadConformPDB reading from PDB file predictions/T0284TS427_4 looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation T0284TS427_4 # ReadConformPDB reading from PDB file predictions/T0284TS427_5 looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation T0284TS427_5 # ReadConformPDB reading from PDB file predictions/T0284TS435_1 looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation T0284TS435_1 # ReadConformPDB reading from PDB file predictions/T0284TS435_2 looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation T0284TS435_2 # ReadConformPDB reading from PDB file predictions/T0284TS435_3 looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation T0284TS435_3 # ReadConformPDB reading from PDB file predictions/T0284TS435_4 looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS435_4 # ReadConformPDB reading from PDB file predictions/T0284TS435_5 looking for model 1 # Found a chain break before 166 # copying to AlignedFragments data structure # naming current conformation T0284TS435_5 # ReadConformPDB reading from PDB file predictions/T0284TS439_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS439_1 # ReadConformPDB reading from PDB file predictions/T0284TS443_1 looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation T0284TS443_1 # ReadConformPDB reading from PDB file predictions/T0284TS468_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS468_1 # ReadConformPDB reading from PDB file predictions/T0284TS469_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS469_1 # ReadConformPDB reading from PDB file predictions/T0284TS469_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS469_2 # ReadConformPDB reading from PDB file predictions/T0284TS469_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS469_3 # ReadConformPDB reading from PDB file predictions/T0284TS469_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS469_4 # ReadConformPDB reading from PDB file predictions/T0284TS469_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS469_5 # ReadConformPDB reading from PDB file predictions/T0284TS490_1 looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # naming current conformation T0284TS490_1 # ReadConformPDB reading from PDB file predictions/T0284TS502_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS502_1 # ReadConformPDB reading from PDB file predictions/T0284TS511_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS511_1 # ReadConformPDB reading from PDB file predictions/T0284TS527_1 looking for model 1 Bad short name: OT1 for alphabet: pdb_atoms Bad short name: OT2 for alphabet: pdb_atoms # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS527_1 # ReadConformPDB reading from PDB file predictions/T0284TS536_1 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS536_1 # ReadConformPDB reading from PDB file predictions/T0284TS536_2 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS536_2 # ReadConformPDB reading from PDB file predictions/T0284TS536_3 looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation T0284TS536_3 # ReadConformPDB reading from PDB file predictions/T0284TS536_4 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS536_4 # ReadConformPDB reading from PDB file predictions/T0284TS536_5 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS536_5 # ReadConformPDB reading from PDB file predictions/T0284TS550_1 looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation T0284TS550_1 # ReadConformPDB reading from PDB file predictions/T0284TS550_2 looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation T0284TS550_2 # ReadConformPDB reading from PDB file predictions/T0284TS550_3 looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation T0284TS550_3 # ReadConformPDB reading from PDB file predictions/T0284TS556_1 looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation T0284TS556_1 # ReadConformPDB reading from PDB file predictions/T0284TS556_2 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS556_2 # ReadConformPDB reading from PDB file predictions/T0284TS556_3 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS556_3 # ReadConformPDB reading from PDB file predictions/T0284TS556_4 looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS556_4 # ReadConformPDB reading from PDB file predictions/T0284TS556_5 looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation T0284TS556_5 # ReadConformPDB reading from PDB file predictions/T0284TS568_1 looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation T0284TS568_1 # ReadConformPDB reading from PDB file predictions/T0284TS568_2 looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS568_2 # ReadConformPDB reading from PDB file predictions/T0284TS568_3 looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS568_3 # ReadConformPDB reading from PDB file predictions/T0284TS568_4 looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation T0284TS568_4 # ReadConformPDB reading from PDB file predictions/T0284TS568_5 looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS568_5 # ReadConformPDB reading from PDB file predictions/T0284TS601_1 looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation T0284TS601_1 # ReadConformPDB reading from PDB file predictions/T0284TS601_2 looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # naming current conformation T0284TS601_2 # ReadConformPDB reading from PDB file predictions/T0284TS601_3 looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation T0284TS601_3 # ReadConformPDB reading from PDB file predictions/T0284TS601_4 looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation T0284TS601_4 # ReadConformPDB reading from PDB file predictions/T0284TS601_5 looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation T0284TS601_5 # ReadConformPDB reading from PDB file predictions/T0284TS640_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS640_1 # ReadConformPDB reading from PDB file predictions/T0284TS641_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS641_1 # ReadConformPDB reading from PDB file predictions/T0284TS650_1 looking for model 1 # Found a chain break before 54 # copying to AlignedFragments data structure # naming current conformation T0284TS650_1 # ReadConformPDB reading from PDB file predictions/T0284TS651_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS651_1 # ReadConformPDB reading from PDB file predictions/T0284TS654_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS654_1 # ReadConformPDB reading from PDB file predictions/T0284TS658_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS658_1 # ReadConformPDB reading from PDB file predictions/T0284TS659_1u looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS659_1u # ReadConformPDB reading from PDB file predictions/T0284TS659_2u looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS659_2u # ReadConformPDB reading from PDB file predictions/T0284TS659_3u looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS659_3u # ReadConformPDB reading from PDB file predictions/T0284TS664_1 looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation T0284TS664_1 # ReadConformPDB reading from PDB file predictions/T0284TS664_2 looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS664_2 # ReadConformPDB reading from PDB file predictions/T0284TS664_3 looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation T0284TS664_3 # ReadConformPDB reading from PDB file predictions/T0284TS664_4 looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation T0284TS664_4 # ReadConformPDB reading from PDB file predictions/T0284TS664_5 looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation T0284TS664_5 # ReadConformPDB reading from PDB file predictions/T0284TS671_1 looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation T0284TS671_1 # ReadConformPDB reading from PDB file predictions/T0284TS671_2 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS671_2 # ReadConformPDB reading from PDB file predictions/T0284TS671_3 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS671_3 # ReadConformPDB reading from PDB file predictions/T0284TS671_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS671_4 # ReadConformPDB reading from PDB file predictions/T0284TS671_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS671_5 # ReadConformPDB reading from PDB file predictions/T0284TS675_1 looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation T0284TS675_1 # ReadConformPDB reading from PDB file predictions/T0284TS675_2 looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation T0284TS675_2 # ReadConformPDB reading from PDB file predictions/T0284TS675_3 looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS675_3 # ReadConformPDB reading from PDB file predictions/T0284TS675_4 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS675_4 # ReadConformPDB reading from PDB file predictions/T0284TS675_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS675_5 # ReadConformPDB reading from PDB file predictions/T0284TS677_1 looking for model 1 WARNING: atom 1421 has residue number 190 < previous residue 287 in predictions/T0284TS677_1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS677_1 # ReadConformPDB reading from PDB file predictions/T0284TS677_2 looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS677_2 # ReadConformPDB reading from PDB file predictions/T0284TS698_1 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS698_1 # ReadConformPDB reading from PDB file predictions/T0284TS710_1 looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation T0284TS710_1 # ReadConformPDB reading from PDB file predictions/T0284TS710_2 looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS710_2 # ReadConformPDB reading from PDB file predictions/T0284TS710_3 looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS710_3 # ReadConformPDB reading from PDB file predictions/T0284TS710_4 looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation T0284TS710_4 # ReadConformPDB reading from PDB file predictions/T0284TS710_5 looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS710_5 # ReadConformPDB reading from PDB file predictions/T0284TS721_1 looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation T0284TS721_1 # ReadConformPDB reading from PDB file predictions/T0284TS721_2 looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # naming current conformation T0284TS721_2 # ReadConformPDB reading from PDB file predictions/T0284TS721_3 looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation T0284TS721_3 # ReadConformPDB reading from PDB file predictions/T0284TS721_4 looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation T0284TS721_4 # ReadConformPDB reading from PDB file predictions/T0284TS721_5 looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # naming current conformation T0284TS721_5 # ReadConformPDB reading from PDB file predictions-scwrl/RT0284TS239_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation RT0284TS239_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/RT0284TS239_3-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation RT0284TS239_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL044_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL044_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL044_2-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL044_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL044_3-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL044_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL044_4-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL044_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL044_5-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL044_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL170_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL170_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL170_2-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL170_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL170_3-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL170_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL170_4-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL170_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL170_5-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL170_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL242_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL242_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL242_2-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL242_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL242_3-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL242_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL242_4-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL242_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL242_5-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL242_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL243_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL243_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL243_2-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL243_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL243_3-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL243_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL243_5-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL243_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL257_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL257_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL257_2-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL257_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL257_3-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL257_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL257_4-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL257_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL257_5-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL257_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL316_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL316_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL316_2-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL316_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL316_3-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL316_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL316_4-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL316_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL316_5-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL316_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL380_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL380_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL380_2-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL380_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL380_3-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL380_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL380_4-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL380_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL380_5-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL380_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL381_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL381_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL381_2-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL381_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL381_3-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL381_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL381_4-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL381_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL381_5-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL381_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL556_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL556_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL556_2-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL556_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL556_3-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL556_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL556_4-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL556_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL556_5-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL556_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284AL706_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284AL706_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS005_1-scwrl looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS005_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS010_1-scwrl looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation T0284TS010_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS010_2-scwrl looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation T0284TS010_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS010_3-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS010_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS010_4-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS010_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS010_5-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS010_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS011_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS011_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS013_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS013_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS020_1-scwrl looking for model 1 # Found a chain break before 256 # copying to AlignedFragments data structure # naming current conformation T0284TS020_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS020_2-scwrl looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation T0284TS020_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS020_3-scwrl looking for model 1 # Found a chain break before 166 # copying to AlignedFragments data structure # naming current conformation T0284TS020_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS020_4-scwrl looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation T0284TS020_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS020_5-scwrl looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation T0284TS020_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS021_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS021_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS022_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS022_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS022_2-scwrl looking for model 1 # Found a chain break before 180 # copying to AlignedFragments data structure # naming current conformation T0284TS022_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS022_3-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS022_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS022_4-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS022_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS022_5-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS022_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS024_1-scwrl looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation T0284TS024_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS024_2-scwrl looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation T0284TS024_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS024_3-scwrl looking for model 1 # Found a chain break before 232 # copying to AlignedFragments data structure # naming current conformation T0284TS024_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS024_4-scwrl looking for model 1 # Found a chain break before 231 # copying to AlignedFragments data structure # naming current conformation T0284TS024_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS024_5-scwrl looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation T0284TS024_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS025_1-scwrl looking for model 1 # Found a chain break before 203 # copying to AlignedFragments data structure # naming current conformation T0284TS025_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS025_2-scwrl looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS025_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS025_3-scwrl looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation T0284TS025_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS025_4-scwrl looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation T0284TS025_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS025_5-scwrl looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS025_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS026_1-scwrl looking for model 1 # naming current conformation T0284TS026_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS026_2-scwrl looking for model 1 # naming current conformation T0284TS026_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS026_3-scwrl looking for model 1 # naming current conformation T0284TS026_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS026_4-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS026_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS026_5-scwrl looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation T0284TS026_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS027_1-scwrl looking for model 1 # naming current conformation T0284TS027_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS027_2-scwrl looking for model 1 # naming current conformation T0284TS027_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS027_3-scwrl looking for model 1 # naming current conformation T0284TS027_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS027_4-scwrl looking for model 1 # naming current conformation T0284TS027_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS027_5-scwrl looking for model 1 # naming current conformation T0284TS027_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS028_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS028_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS028_2-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS028_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS028_3-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS028_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS028_4-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS028_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS028_5-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS028_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS034_1-scwrl looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation T0284TS034_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS034_2-scwrl looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation T0284TS034_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS034_3-scwrl looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation T0284TS034_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS034_4-scwrl looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation T0284TS034_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS034_5-scwrl looking for model 1 # Found a chain break before 265 # copying to AlignedFragments data structure # naming current conformation T0284TS034_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS035_1-scwrl looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation T0284TS035_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS035_2-scwrl looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation T0284TS035_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS035_3-scwrl looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation T0284TS035_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS035_4-scwrl looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation T0284TS035_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS035_5-scwrl looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation T0284TS035_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS038_1-scwrl looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS038_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS038_2-scwrl looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation T0284TS038_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS038_3-scwrl looking for model 1 # Found a chain break before 255 # copying to AlignedFragments data structure # naming current conformation T0284TS038_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS046_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS046_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS046_2-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS046_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS046_3-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS046_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS046_4-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS046_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS046_5-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS046_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS047_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS047_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS047_2-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS047_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS047_3-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS047_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS047_4-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS047_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS047_5-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS047_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS050_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS050_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS050_2-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS050_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS050_3-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS050_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS050_4-scwrl looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # naming current conformation T0284TS050_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS050_5-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS050_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS054_1-scwrl looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS054_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS060_1-scwrl looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation T0284TS060_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS060_2-scwrl looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS060_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS060_3-scwrl looking for model 1 # Found a chain break before 255 # copying to AlignedFragments data structure # naming current conformation T0284TS060_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS060_4-scwrl looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation T0284TS060_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS060_5-scwrl looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation T0284TS060_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS063_1-scwrl looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation T0284TS063_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS063_2-scwrl looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation T0284TS063_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS063_3-scwrl looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation T0284TS063_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS063_4-scwrl looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation T0284TS063_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS064_1-scwrl looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation T0284TS064_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS071_1-scwrl looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS071_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS071_2-scwrl looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation T0284TS071_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS071_3-scwrl looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS071_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS071_4-scwrl looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation T0284TS071_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS071_5-scwrl looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation T0284TS071_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS074_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS074_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS074_2-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS074_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS074_3-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS074_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS083_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS083_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS083_2-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS083_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS083_3-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS083_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS083_4-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS083_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS083_5-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS083_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS087_1-scwrl looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # naming current conformation T0284TS087_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS087_2-scwrl looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # naming current conformation T0284TS087_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS087_3-scwrl looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # naming current conformation T0284TS087_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS087_4-scwrl looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # naming current conformation T0284TS087_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS087_5-scwrl looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # naming current conformation T0284TS087_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS091_1-scwrl looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS091_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS091_2-scwrl looking for model 1 # Found a chain break before 238 # copying to AlignedFragments data structure # naming current conformation T0284TS091_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS091_3-scwrl looking for model 1 # Found a chain break before 207 # copying to AlignedFragments data structure # naming current conformation T0284TS091_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS091_4-scwrl looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation T0284TS091_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS091_5-scwrl looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation T0284TS091_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS092_1-scwrl looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation T0284TS092_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS092_2-scwrl looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation T0284TS092_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS092_3-scwrl looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS092_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS092_4-scwrl looking for model 1 # Found a chain break before 205 # copying to AlignedFragments data structure # naming current conformation T0284TS092_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS092_5-scwrl looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation T0284TS092_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS102_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS102_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS102_2-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS102_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS102_3-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS102_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS102_4-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS102_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS102_5-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS102_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS103_1-scwrl looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation T0284TS103_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS105_1-scwrl looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation T0284TS105_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS105_2-scwrl looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS105_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS105_3-scwrl looking for model 1 # naming current conformation T0284TS105_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS105_4-scwrl looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation T0284TS105_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS105_5-scwrl looking for model 1 # Found a chain break before 202 # copying to AlignedFragments data structure # naming current conformation T0284TS105_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS111_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS111_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS111_2-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS111_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS111_3-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS111_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS111_4-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS111_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS113_1-scwrl looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation T0284TS113_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS113_2-scwrl looking for model 1 # Found a chain break before 11 # copying to AlignedFragments data structure # naming current conformation T0284TS113_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS113_3-scwrl looking for model 1 # Found a chain break before 233 # copying to AlignedFragments data structure # naming current conformation T0284TS113_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS113_4-scwrl looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation T0284TS113_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS113_5-scwrl looking for model 1 # Found a chain break before 205 # copying to AlignedFragments data structure # naming current conformation T0284TS113_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS125_1-scwrl looking for model 1 # Found a chain break before 255 # copying to AlignedFragments data structure # naming current conformation T0284TS125_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS125_1u-scwrl looking for model 1 # Found a chain break before 255 # copying to AlignedFragments data structure # naming current conformation T0284TS125_1u-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS125_2-scwrl looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS125_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS125_2u-scwrl looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS125_2u-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS125_3-scwrl looking for model 1 # Found a chain break before 257 # copying to AlignedFragments data structure # naming current conformation T0284TS125_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS125_3u-scwrl looking for model 1 # Found a chain break before 257 # copying to AlignedFragments data structure # naming current conformation T0284TS125_3u-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS125_4-scwrl looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS125_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS125_4u-scwrl looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS125_4u-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS125_5-scwrl looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation T0284TS125_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS125_5u-scwrl looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation T0284TS125_5u-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS132_1-scwrl looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS132_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS135_1-scwrl looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS135_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS136_1-scwrl looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation T0284TS136_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS136_2-scwrl looking for model 1 # Found a chain break before 210 # copying to AlignedFragments data structure # naming current conformation T0284TS136_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS136_3-scwrl looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation T0284TS136_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS136_4-scwrl looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation T0284TS136_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS136_5-scwrl looking for model 1 # Found a chain break before 261 # copying to AlignedFragments data structure # naming current conformation T0284TS136_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS137_1-scwrl looking for model 1 # Found a chain break before 268 # copying to AlignedFragments data structure # naming current conformation T0284TS137_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS137_2-scwrl looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation T0284TS137_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS137_3-scwrl looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation T0284TS137_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS137_4-scwrl looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation T0284TS137_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS137_5-scwrl looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation T0284TS137_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS139_1-scwrl looking for model 1 # Found a chain break before 231 # copying to AlignedFragments data structure # naming current conformation T0284TS139_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS139_2-scwrl looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation T0284TS139_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS139_3-scwrl looking for model 1 # Found a chain break before 127 # copying to AlignedFragments data structure # naming current conformation T0284TS139_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS139_4-scwrl looking for model 1 # Found a chain break before 255 # copying to AlignedFragments data structure # naming current conformation T0284TS139_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS139_5-scwrl looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS139_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS168_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS168_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS168_2-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS168_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS168_3-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS168_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS168_4-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS168_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS168_5-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS168_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS178_1-scwrl looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS178_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS178_2-scwrl looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS178_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS178_3-scwrl looking for model 1 # Found a chain break before 227 # copying to AlignedFragments data structure # naming current conformation T0284TS178_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS178_4-scwrl looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS178_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS178_5-scwrl looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS178_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS179_1-scwrl looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation T0284TS179_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS179_2-scwrl looking for model 1 # Found a chain break before 254 # copying to AlignedFragments data structure # naming current conformation T0284TS179_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS179_3-scwrl looking for model 1 # Found a chain break before 254 # copying to AlignedFragments data structure # naming current conformation T0284TS179_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS179_4-scwrl looking for model 1 # Found a chain break before 254 # copying to AlignedFragments data structure # naming current conformation T0284TS179_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS179_5-scwrl looking for model 1 # Found a chain break before 246 # copying to AlignedFragments data structure # naming current conformation T0284TS179_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS186_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS186_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS186_2-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS186_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS186_3-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS186_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS186_4-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS186_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS186_5-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS186_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS193_1-scwrl looking for model 1 WARNING: atoms too close: (T0284)G213.O and (T0284)N214.N only 7.69898e-05 apart, perturbing (T0284)N214.N # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation T0284TS193_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS197_1-scwrl looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS197_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS197_2-scwrl looking for model 1 # Found a chain break before 261 # copying to AlignedFragments data structure # naming current conformation T0284TS197_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS197_3-scwrl looking for model 1 # Found a chain break before 205 # copying to AlignedFragments data structure # naming current conformation T0284TS197_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS197_4-scwrl looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS197_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS197_5-scwrl looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS197_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS203_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS203_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS203_2-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS203_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS203_4-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS203_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS203_5-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS203_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS205_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS205_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS205_2-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS205_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS205_3-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS205_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS205_4-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS205_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS205_5-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS205_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS209_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS209_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS209_2-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS209_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS209_3-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS209_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS209_4-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS209_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS209_5-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS209_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS211_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS211_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS211_2-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS211_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS211_3-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS211_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS211_4-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS211_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS211_5-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS211_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS212_1-scwrl looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS212_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS213_1-scwrl looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS213_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS214_1-scwrl looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation T0284TS214_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS224_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS224_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS234_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS234_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS239_1_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS239_1_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS239_1_2-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS239_1_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS239_2-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS239_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS239_3_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS239_3_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS239_3_2-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS239_3_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS239_3_3-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS239_3_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS239_4-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS239_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS239_5-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS239_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS245_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS245_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS247_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS247_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS247_2-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS247_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS247_3-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS247_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS247_4-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS247_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS247_5-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS247_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS248_1-scwrl looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation T0284TS248_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS248_2-scwrl looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # naming current conformation T0284TS248_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS248_3-scwrl looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # naming current conformation T0284TS248_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS248_4-scwrl looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation T0284TS248_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS248_5-scwrl looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation T0284TS248_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS249_1-scwrl looking for model 1 # naming current conformation T0284TS249_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS250_1-scwrl looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation T0284TS250_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS250_2-scwrl looking for model 1 # Found a chain break before 227 # copying to AlignedFragments data structure # naming current conformation T0284TS250_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS250_3-scwrl looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS250_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS250_4-scwrl looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation T0284TS250_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS250_5-scwrl looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation T0284TS250_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS261_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS261_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS267_1-scwrl looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation T0284TS267_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS267_2-scwrl looking for model 1 # Found a chain break before 181 # copying to AlignedFragments data structure # naming current conformation T0284TS267_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS267_3-scwrl looking for model 1 # Found a chain break before 206 # copying to AlignedFragments data structure # naming current conformation T0284TS267_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS267_4-scwrl looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation T0284TS267_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS267_5-scwrl looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS267_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS268_1-scwrl looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation T0284TS268_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS268_2-scwrl looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS268_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS268_3-scwrl looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation T0284TS268_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS268_4-scwrl looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation T0284TS268_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS268_5-scwrl looking for model 1 # Found a chain break before 210 # copying to AlignedFragments data structure # naming current conformation T0284TS268_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS273_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS273_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS274_1-scwrl looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation T0284TS274_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS275_1-scwrl looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS275_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS276_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS276_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS276_2-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS276_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS276_3-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS276_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS276_4-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS276_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS276_5-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS276_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS277_1-scwrl looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation T0284TS277_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS277_2-scwrl looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation T0284TS277_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS277_3-scwrl looking for model 1 # Found a chain break before 261 # copying to AlignedFragments data structure # naming current conformation T0284TS277_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS277_4-scwrl looking for model 1 # Found a chain break before 262 # copying to AlignedFragments data structure # naming current conformation T0284TS277_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS277_5-scwrl looking for model 1 # Found a chain break before 257 # copying to AlignedFragments data structure # naming current conformation T0284TS277_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS297_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS297_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS297_2-scwrl looking for model 1 # Found a chain break before 226 # copying to AlignedFragments data structure # naming current conformation T0284TS297_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS297_3-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS297_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS297_4-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS297_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS297_5-scwrl looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation T0284TS297_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS298_1-scwrl looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation T0284TS298_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS298_2-scwrl looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation T0284TS298_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS298_3-scwrl looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS298_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS298_4-scwrl looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation T0284TS298_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS298_5-scwrl looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation T0284TS298_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS302_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS302_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS302_2-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS302_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS302_3-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS302_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS302_4-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS302_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS302_5-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS302_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS307_1-scwrl looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS307_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS307_1u-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS307_1u-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS307_2-scwrl looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS307_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS307_2u-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS307_2u-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS307_3-scwrl looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS307_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS307_3u-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS307_3u-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS307_4-scwrl looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS307_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS307_4u-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS307_4u-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS307_5-scwrl looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation T0284TS307_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS307_5u-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS307_5u-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS318_1-scwrl looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation T0284TS318_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS318_2-scwrl looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation T0284TS318_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS318_3-scwrl looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation T0284TS318_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS318_4-scwrl looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS318_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS318_5-scwrl looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation T0284TS318_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS319_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS319_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS319_2-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS319_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS319_3-scwrl looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation T0284TS319_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS319_4-scwrl looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation T0284TS319_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS319_5-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS319_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS337_1-scwrl looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS337_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS337_2-scwrl looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS337_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS337_3-scwrl looking for model 1 # Found a chain break before 211 # copying to AlignedFragments data structure # naming current conformation T0284TS337_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS337_4-scwrl looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation T0284TS337_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS337_5-scwrl looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation T0284TS337_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS338_1-scwrl looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation T0284TS338_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS338_2-scwrl looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS338_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS347_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS347_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS349_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS349_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS349_2-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS349_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS349_3-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS349_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS349_4-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS349_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS349_5-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS349_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS351_1-scwrl looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation T0284TS351_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS351_2-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS351_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS351_3-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS351_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS351_4-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS351_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS351_5-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS351_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS368_1-scwrl looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation T0284TS368_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS368_2-scwrl looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation T0284TS368_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS368_3-scwrl looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation T0284TS368_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS383_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS383_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS383_2-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS383_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS383_3-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS383_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS383_4-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS383_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS383_5-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS383_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS389_1-scwrl looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS389_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS389_2-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS389_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS389_3-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS389_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS389_4-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS389_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS389_5-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS389_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS393_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS393_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS393_2-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS393_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS393_3-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS393_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS393_4-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS393_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS393_5-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS393_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS401_1-scwrl looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation T0284TS401_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS401_2-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS401_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS401_3-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS401_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS413_1-scwrl looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS413_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS413_2-scwrl looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS413_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS413_3-scwrl looking for model 1 # Found a chain break before 230 # copying to AlignedFragments data structure # naming current conformation T0284TS413_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS413_4-scwrl looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation T0284TS413_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS413_5-scwrl looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation T0284TS413_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS414_1-scwrl looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS414_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS414_2-scwrl looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation T0284TS414_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS414_3-scwrl looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation T0284TS414_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS414_4-scwrl looking for model 1 # Found a chain break before 230 # copying to AlignedFragments data structure # naming current conformation T0284TS414_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS414_5-scwrl looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation T0284TS414_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS415_1-scwrl looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS415_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS415_2-scwrl looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation T0284TS415_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS415_3-scwrl looking for model 1 # Found a chain break before 230 # copying to AlignedFragments data structure # naming current conformation T0284TS415_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS415_4-scwrl looking for model 1 # Found a chain break before 181 # copying to AlignedFragments data structure # naming current conformation T0284TS415_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS415_5-scwrl looking for model 1 # Found a chain break before 233 # copying to AlignedFragments data structure # naming current conformation T0284TS415_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS416_1-scwrl looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation T0284TS416_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS416_2-scwrl looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation T0284TS416_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS418_1-scwrl looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS418_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS420_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS420_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS420_2-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS420_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS420_3-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS420_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS420_4-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS420_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS420_5-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS420_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS427_1-scwrl looking for model 1 # Found a chain break before 238 # copying to AlignedFragments data structure # naming current conformation T0284TS427_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS427_2-scwrl looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # naming current conformation T0284TS427_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS427_3-scwrl looking for model 1 # Found a chain break before 238 # copying to AlignedFragments data structure # naming current conformation T0284TS427_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS427_4-scwrl looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation T0284TS427_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS427_5-scwrl looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation T0284TS427_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS435_1-scwrl looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation T0284TS435_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS435_2-scwrl looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation T0284TS435_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS435_3-scwrl looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation T0284TS435_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS435_4-scwrl looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS435_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS435_5-scwrl looking for model 1 # Found a chain break before 166 # copying to AlignedFragments data structure # naming current conformation T0284TS435_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS439_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS439_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS443_1-scwrl looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation T0284TS443_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS468_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS468_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS469_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS469_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS469_2-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS469_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS469_3-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS469_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS469_4-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS469_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS469_5-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS469_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS490_1-scwrl looking for model 1 # Found a chain break before 252 # copying to AlignedFragments data structure # naming current conformation T0284TS490_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS502_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS502_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS511_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS511_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS527_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS527_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS536_1-scwrl looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS536_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS536_2-scwrl looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS536_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS536_3-scwrl looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation T0284TS536_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS536_4-scwrl looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS536_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS536_5-scwrl looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS536_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS550_1-scwrl looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation T0284TS550_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS550_2-scwrl looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation T0284TS550_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS550_3-scwrl looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation T0284TS550_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS556_1-scwrl looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation T0284TS556_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS556_2-scwrl looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS556_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS556_3-scwrl looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS556_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS556_4-scwrl looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation T0284TS556_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS556_5-scwrl looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation T0284TS556_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS568_1-scwrl looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation T0284TS568_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS568_2-scwrl looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS568_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS568_3-scwrl looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS568_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS568_4-scwrl looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation T0284TS568_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS568_5-scwrl looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS568_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS601_1-scwrl looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation T0284TS601_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS601_2-scwrl looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # naming current conformation T0284TS601_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS601_3-scwrl looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation T0284TS601_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS601_4-scwrl looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation T0284TS601_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS601_5-scwrl looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation T0284TS601_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS640_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation T0284TS640_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS641_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS641_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS650_1-scwrl looking for model 1 # Found a chain break before 54 # copying to AlignedFragments data structure # naming current conformation T0284TS650_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS651_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS651_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS654_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS654_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS658_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS658_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS659_1u-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS659_1u-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS659_2u-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS659_2u-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS659_3u-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS659_3u-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS664_1-scwrl looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation T0284TS664_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS664_2-scwrl looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS664_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS664_3-scwrl looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation T0284TS664_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS664_4-scwrl looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation T0284TS664_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS664_5-scwrl looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation T0284TS664_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS671_1-scwrl looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation T0284TS671_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS671_2-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS671_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS671_3-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS671_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS671_4-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS671_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS671_5-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS671_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS675_1-scwrl looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation T0284TS675_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS675_2-scwrl looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation T0284TS675_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS675_3-scwrl looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS675_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS675_4-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS675_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS675_5-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS675_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS677_1-scwrl looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS677_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS677_2-scwrl looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS677_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS698_1-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS698_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS710_1-scwrl looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation T0284TS710_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS710_2-scwrl looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS710_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS710_3-scwrl looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation T0284TS710_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS710_4-scwrl looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation T0284TS710_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS710_5-scwrl looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation T0284TS710_5-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS721_1-scwrl looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation T0284TS721_1-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS721_2-scwrl looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # naming current conformation T0284TS721_2-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS721_3-scwrl looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation T0284TS721_3-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS721_4-scwrl looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation T0284TS721_4-scwrl # ReadConformPDB reading from PDB file predictions-scwrl/T0284TS721_5-scwrl looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # naming current conformation T0284TS721_5-scwrl # command:CPU_time= 81.280 sec, elapsed time= 84.066 sec. # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/predictions.real-cost.rdb # command:# CostConform Warning: Couldn't open file decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot or decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot.gz for input Trying /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot # Reading spots from /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot T0284TS721_5-scwrl costs 0.000 real_cost = 157.012 T0284TS721_4-scwrl costs 0.000 real_cost = 138.486 T0284TS721_3-scwrl costs 0.000 real_cost = 151.763 T0284TS721_2-scwrl costs 0.000 real_cost = 142.348 T0284TS721_1-scwrl costs 0.000 real_cost = 143.697 T0284TS710_5-scwrl costs 0.000 real_cost = 150.578 T0284TS710_4-scwrl costs 0.000 real_cost = 146.732 T0284TS710_3-scwrl costs 0.000 real_cost = 142.930 T0284TS710_2-scwrl costs 0.000 real_cost = 154.902 T0284TS710_1-scwrl costs 0.000 real_cost = 159.524 T0284TS698_1-scwrl costs 0.000 real_cost = 158.350 T0284TS677_2-scwrl costs 0.000 real_cost = 135.163 T0284TS677_1-scwrl costs 0.000 real_cost = 135.163 T0284TS675_5-scwrl costs 0.000 real_cost = 177.336 T0284TS675_4-scwrl costs 0.000 real_cost = 132.453 T0284TS675_3-scwrl costs 0.000 real_cost = 154.908 T0284TS675_2-scwrl costs 0.000 real_cost = 181.226 T0284TS675_1-scwrl costs 0.000 real_cost = 120.574 T0284TS671_5-scwrl costs 0.000 real_cost = 128.204 T0284TS671_4-scwrl costs 0.000 real_cost = 144.925 T0284TS671_3-scwrl costs 0.000 real_cost = 154.514 T0284TS671_2-scwrl costs 0.000 real_cost = 142.107 T0284TS671_1-scwrl costs 0.000 real_cost = 149.810 T0284TS664_5-scwrl costs 0.000 real_cost = 159.538 T0284TS664_4-scwrl costs 0.000 real_cost = 181.016 T0284TS664_3-scwrl costs 0.000 real_cost = 147.768 T0284TS664_2-scwrl costs 0.000 real_cost = 154.908 T0284TS664_1-scwrl costs 0.000 real_cost = 146.593 T0284TS659_3u-scwrl costs 0.000 real_cost = 121.470 T0284TS659_2u-scwrl costs 0.000 real_cost = 115.837 T0284TS659_1u-scwrl costs 0.000 real_cost = 119.985 T0284TS658_1-scwrl costs 0.000 real_cost = 152.106 T0284TS654_1-scwrl costs 0.000 real_cost = 120.766 T0284TS651_1-scwrl costs 0.000 real_cost = 163.691 T0284TS650_1-scwrl costs 0.000 real_cost = 133.435 T0284TS641_1-scwrl costs 0.000 real_cost = 137.857 T0284TS640_1-scwrl costs 0.000 real_cost = 242.172 T0284TS601_5-scwrl costs 0.000 real_cost = 157.637 T0284TS601_4-scwrl costs 0.000 real_cost = 203.735 T0284TS601_3-scwrl costs 0.000 real_cost = 233.571 T0284TS601_2-scwrl costs 0.000 real_cost = 144.845 T0284TS601_1-scwrl costs 0.000 real_cost = 147.122 T0284TS568_5-scwrl costs 0.000 real_cost = 143.461 T0284TS568_4-scwrl costs 0.000 real_cost = 113.052 T0284TS568_3-scwrl costs 0.000 real_cost = 138.681 T0284TS568_2-scwrl costs 0.000 real_cost = 132.674 T0284TS568_1-scwrl costs 0.000 real_cost = 136.362 T0284TS556_5-scwrl costs 0.000 real_cost = 137.946 T0284TS556_4-scwrl costs 0.000 real_cost = 139.067 T0284TS556_3-scwrl costs 0.000 real_cost = 140.336 T0284TS556_2-scwrl costs 0.000 real_cost = 144.086 T0284TS556_1-scwrl costs 0.000 real_cost = 137.523 T0284TS550_3-scwrl costs 0.000 real_cost = 347.165 T0284TS550_2-scwrl costs 0.000 real_cost = 332.411 T0284TS550_1-scwrl costs 0.000 real_cost = 299.955 T0284TS536_5-scwrl costs 0.000 real_cost = 135.505 T0284TS536_4-scwrl costs 0.000 real_cost = 203.219 T0284TS536_3-scwrl costs 0.000 real_cost = 143.487 T0284TS536_2-scwrl costs 0.000 real_cost = 142.431 T0284TS536_1-scwrl costs 0.000 real_cost = 134.648 T0284TS527_1-scwrl costs 0.000 real_cost = 149.748 T0284TS511_1-scwrl costs 0.000 real_cost = 374.541 T0284TS502_1-scwrl costs 0.000 real_cost = 120.766 T0284TS490_1-scwrl costs 0.000 real_cost = 155.447 T0284TS469_5-scwrl costs 0.000 real_cost = 120.428 T0284TS469_4-scwrl costs 0.000 real_cost = 121.542 T0284TS469_3-scwrl costs 0.000 real_cost = 121.084 T0284TS469_2-scwrl costs 0.000 real_cost = 122.341 T0284TS469_1-scwrl costs 0.000 real_cost = 121.504 T0284TS468_1-scwrl costs 0.000 real_cost = 165.129 T0284TS443_1-scwrl costs 0.000 real_cost = 142.083 T0284TS439_1-scwrl costs 0.000 real_cost = 121.652 T0284TS435_5-scwrl costs 0.000 real_cost = 264.254 T0284TS435_4-scwrl costs 0.000 real_cost = 141.169 T0284TS435_3-scwrl costs 0.000 real_cost = 112.504 T0284TS435_2-scwrl costs 0.000 real_cost = 153.940 T0284TS435_1-scwrl costs 0.000 real_cost = 140.884 T0284TS427_5-scwrl costs 0.000 real_cost = 231.437 T0284TS427_4-scwrl costs 0.000 real_cost = 230.301 T0284TS427_3-scwrl costs 0.000 real_cost = 253.330 T0284TS427_2-scwrl costs 0.000 real_cost = 237.102 T0284TS427_1-scwrl costs 0.000 real_cost = 235.141 T0284TS420_5-scwrl costs 0.000 real_cost = 121.410 T0284TS420_4-scwrl costs 0.000 real_cost = 120.642 T0284TS420_3-scwrl costs 0.000 real_cost = 121.144 T0284TS420_2-scwrl costs 0.000 real_cost = 118.089 T0284TS420_1-scwrl costs 0.000 real_cost = 117.887 T0284TS418_1-scwrl costs 0.000 real_cost = 138.302 T0284TS416_2-scwrl costs 0.000 real_cost = 117.725 T0284TS416_1-scwrl costs 0.000 real_cost = 145.248 T0284TS415_5-scwrl costs 0.000 real_cost = 171.960 T0284TS415_4-scwrl costs 0.000 real_cost = 174.359 T0284TS415_3-scwrl costs 0.000 real_cost = 148.921 T0284TS415_2-scwrl costs 0.000 real_cost = 149.715 T0284TS415_1-scwrl costs 0.000 real_cost = 141.803 T0284TS414_5-scwrl costs 0.000 real_cost = 164.337 T0284TS414_4-scwrl costs 0.000 real_cost = 154.180 T0284TS414_3-scwrl costs 0.000 real_cost = 182.810 T0284TS414_2-scwrl costs 0.000 real_cost = 148.869 T0284TS414_1-scwrl costs 0.000 real_cost = 141.708 T0284TS413_5-scwrl costs 0.000 real_cost = 166.404 T0284TS413_4-scwrl costs 0.000 real_cost = 181.944 T0284TS413_3-scwrl costs 0.000 real_cost = 141.623 T0284TS413_2-scwrl costs 0.000 real_cost = 148.978 T0284TS413_1-scwrl costs 0.000 real_cost = 140.344 T0284TS401_3-scwrl costs 0.000 real_cost = 272.909 T0284TS401_2-scwrl costs 0.000 real_cost = 158.602 T0284TS401_1-scwrl costs 0.000 real_cost = 134.194 T0284TS393_5-scwrl costs 0.000 real_cost = 122.905 T0284TS393_4-scwrl costs 0.000 real_cost = 137.919 T0284TS393_3-scwrl costs 0.000 real_cost = 127.480 T0284TS393_2-scwrl costs 0.000 real_cost = 158.586 T0284TS393_1-scwrl costs 0.000 real_cost = 132.081 T0284TS389_5-scwrl costs 0.000 real_cost = 249.063 T0284TS389_4-scwrl costs 0.000 real_cost = 210.182 T0284TS389_3-scwrl costs 0.000 real_cost = 115.445 T0284TS389_2-scwrl costs 0.000 real_cost = 117.688 T0284TS389_1-scwrl costs 0.000 real_cost = 137.440 T0284TS383_5-scwrl costs 0.000 real_cost = 101.702 T0284TS383_4-scwrl costs 0.000 real_cost = 100.643 T0284TS383_3-scwrl costs 0.000 real_cost = 97.571 T0284TS383_2-scwrl costs 0.000 real_cost = 95.340 T0284TS383_1-scwrl costs 0.000 real_cost = 94.238 T0284TS368_3-scwrl costs 0.000 real_cost = 153.223 T0284TS368_2-scwrl costs 0.000 real_cost = 153.223 T0284TS368_1-scwrl costs 0.000 real_cost = 147.461 T0284TS351_5-scwrl costs 0.000 real_cost = 146.990 T0284TS351_4-scwrl costs 0.000 real_cost = 132.667 T0284TS351_3-scwrl costs 0.000 real_cost = 119.293 T0284TS351_2-scwrl costs 0.000 real_cost = 137.600 T0284TS351_1-scwrl costs 0.000 real_cost = 142.238 T0284TS349_5-scwrl costs 0.000 real_cost = 146.990 T0284TS349_4-scwrl costs 0.000 real_cost = 132.667 T0284TS349_3-scwrl costs 0.000 real_cost = 119.293 T0284TS349_2-scwrl costs 0.000 real_cost = 137.600 T0284TS349_1-scwrl costs 0.000 real_cost = 134.370 T0284TS347_1-scwrl costs 0.000 real_cost = 140.742 T0284TS338_2-scwrl costs 0.000 real_cost = 131.835 T0284TS338_1-scwrl costs 0.000 real_cost = 131.874 T0284TS337_5-scwrl costs 0.000 real_cost = 127.612 T0284TS337_4-scwrl costs 0.000 real_cost = 127.612 T0284TS337_3-scwrl costs 0.000 real_cost = 149.005 T0284TS337_2-scwrl costs 0.000 real_cost = 146.949 T0284TS337_1-scwrl costs 0.000 real_cost = 180.977 T0284TS319_5-scwrl costs 0.000 real_cost = 264.141 T0284TS319_4-scwrl costs 0.000 real_cost = 297.583 T0284TS319_3-scwrl costs 0.000 real_cost = 278.689 T0284TS319_2-scwrl costs 0.000 real_cost = 142.862 T0284TS319_1-scwrl costs 0.000 real_cost = 150.100 T0284TS318_5-scwrl costs 0.000 real_cost = 181.728 T0284TS318_4-scwrl costs 0.000 real_cost = 121.277 T0284TS318_3-scwrl costs 0.000 real_cost = 130.173 T0284TS318_2-scwrl costs 0.000 real_cost = 134.884 T0284TS318_1-scwrl costs 0.000 real_cost = 122.157 T0284TS307_5u-scwrl costs 0.000 real_cost = 142.194 T0284TS307_5-scwrl costs 0.000 real_cost = 313.756 T0284TS307_4u-scwrl costs 0.000 real_cost = 142.194 T0284TS307_4-scwrl costs 0.000 real_cost = 269.589 T0284TS307_3u-scwrl costs 0.000 real_cost = 142.194 T0284TS307_3-scwrl costs 0.000 real_cost = 264.550 T0284TS307_2u-scwrl costs 0.000 real_cost = 142.194 T0284TS307_2-scwrl costs 0.000 real_cost = 288.044 T0284TS307_1u-scwrl costs 0.000 real_cost = 142.194 T0284TS307_1-scwrl costs 0.000 real_cost = 189.838 T0284TS302_5-scwrl costs 0.000 real_cost = 122.532 T0284TS302_4-scwrl costs 0.000 real_cost = 120.244 T0284TS302_3-scwrl costs 0.000 real_cost = 126.024 T0284TS302_2-scwrl costs 0.000 real_cost = 119.839 T0284TS302_1-scwrl costs 0.000 real_cost = 116.867 T0284TS298_5-scwrl costs 0.000 real_cost = 139.589 T0284TS298_4-scwrl costs 0.000 real_cost = 124.978 T0284TS298_3-scwrl costs 0.000 real_cost = 146.341 T0284TS298_2-scwrl costs 0.000 real_cost = 121.160 T0284TS298_1-scwrl costs 0.000 real_cost = 147.768 T0284TS297_5-scwrl costs 0.000 real_cost = 105.674 T0284TS297_4-scwrl costs 0.000 real_cost = 134.104 T0284TS297_3-scwrl costs 0.000 real_cost = 169.022 T0284TS297_2-scwrl costs 0.000 real_cost = 123.465 T0284TS297_1-scwrl costs 0.000 real_cost = 121.609 T0284TS277_5-scwrl costs 0.000 real_cost = 121.215 T0284TS277_4-scwrl costs 0.000 real_cost = 117.659 T0284TS277_3-scwrl costs 0.000 real_cost = 117.846 T0284TS277_2-scwrl costs 0.000 real_cost = 147.589 T0284TS277_1-scwrl costs 0.000 real_cost = 147.967 T0284TS276_5-scwrl costs 0.000 real_cost = 139.485 T0284TS276_4-scwrl costs 0.000 real_cost = 115.811 T0284TS276_3-scwrl costs 0.000 real_cost = 206.316 T0284TS276_2-scwrl costs 0.000 real_cost = 164.805 T0284TS276_1-scwrl costs 0.000 real_cost = 138.106 T0284TS275_1-scwrl costs 0.000 real_cost = 124.197 T0284TS274_1-scwrl costs 0.000 real_cost = 177.042 T0284TS273_1-scwrl costs 0.000 real_cost = 264.833 T0284TS268_5-scwrl costs 0.000 real_cost = 124.660 T0284TS268_4-scwrl costs 0.000 real_cost = 132.490 T0284TS268_3-scwrl costs 0.000 real_cost = 127.351 T0284TS268_2-scwrl costs 0.000 real_cost = 135.310 T0284TS268_1-scwrl costs 0.000 real_cost = 138.772 T0284TS267_5-scwrl costs 0.000 real_cost = 141.708 T0284TS267_4-scwrl costs 0.000 real_cost = 168.983 T0284TS267_3-scwrl costs 0.000 real_cost = 181.439 T0284TS267_2-scwrl costs 0.000 real_cost = 181.598 T0284TS267_1-scwrl costs 0.000 real_cost = 126.942 T0284TS261_1-scwrl costs 0.000 real_cost = 119.513 T0284TS250_5-scwrl costs 0.000 real_cost = 214.553 T0284TS250_4-scwrl costs 0.000 real_cost = 199.728 T0284TS250_3-scwrl costs 0.000 real_cost = 254.280 T0284TS250_2-scwrl costs 0.000 real_cost = 147.989 T0284TS250_1-scwrl costs 0.000 real_cost = 181.489 T0284TS249_1-scwrl costs 0.000 real_cost = 141.719 T0284TS248_5-scwrl costs 0.000 real_cost = 150.483 T0284TS248_4-scwrl costs 0.000 real_cost = 138.508 T0284TS248_3-scwrl costs 0.000 real_cost = 144.787 T0284TS248_2-scwrl costs 0.000 real_cost = 150.798 T0284TS248_1-scwrl costs 0.000 real_cost = 138.508 T0284TS247_5-scwrl costs 0.000 real_cost = 128.406 T0284TS247_4-scwrl costs 0.000 real_cost = 138.335 T0284TS247_3-scwrl costs 0.000 real_cost = 124.086 T0284TS247_2-scwrl costs 0.000 real_cost = 119.989 T0284TS247_1-scwrl costs 0.000 real_cost = 125.156 T0284TS245_1-scwrl costs 0.000 real_cost = 159.815 T0284TS239_5-scwrl costs 0.000 real_cost = 291.195 T0284TS239_4-scwrl costs 0.000 real_cost = 195.120 T0284TS239_3_3-scwrl costs 0.000 real_cost = 678.666 T0284TS239_3_2-scwrl costs 0.000 real_cost = 131.650 T0284TS239_3_1-scwrl costs 0.000 real_cost = 164.371 T0284TS239_2-scwrl costs 0.000 real_cost = 165.298 T0284TS239_1_2-scwrl costs 0.000 real_cost = 678.666 T0284TS239_1_1-scwrl costs 0.000 real_cost = 118.684 T0284TS234_1-scwrl costs 0.000 real_cost = 116.597 T0284TS224_1-scwrl costs 0.000 real_cost = 137.857 T0284TS214_1-scwrl costs 0.000 real_cost = 143.407 T0284TS213_1-scwrl costs 0.000 real_cost = 138.302 T0284TS212_1-scwrl costs 0.000 real_cost = 124.086 T0284TS211_5-scwrl costs 0.000 real_cost = 132.650 T0284TS211_4-scwrl costs 0.000 real_cost = 149.309 T0284TS211_3-scwrl costs 0.000 real_cost = 164.290 T0284TS211_2-scwrl costs 0.000 real_cost = 183.325 T0284TS211_1-scwrl costs 0.000 real_cost = 156.650 T0284TS209_5-scwrl costs 0.000 real_cost = 161.884 T0284TS209_4-scwrl costs 0.000 real_cost = 148.708 T0284TS209_3-scwrl costs 0.000 real_cost = 150.944 T0284TS209_2-scwrl costs 0.000 real_cost = 122.439 T0284TS209_1-scwrl costs 0.000 real_cost = 130.255 T0284TS205_5-scwrl costs 0.000 real_cost = 161.990 T0284TS205_4-scwrl costs 0.000 real_cost = 179.344 T0284TS205_3-scwrl costs 0.000 real_cost = 179.344 T0284TS205_2-scwrl costs 0.000 real_cost = 165.152 T0284TS205_1-scwrl costs 0.000 real_cost = 155.249 T0284TS203_5-scwrl costs 0.000 real_cost = 182.932 T0284TS203_4-scwrl costs 0.000 real_cost = 270.622 T0284TS203_2-scwrl costs 0.000 real_cost = 163.436 T0284TS203_1-scwrl costs 0.000 real_cost = 141.287 T0284TS197_5-scwrl costs 0.000 real_cost = 315.558 T0284TS197_4-scwrl costs 0.000 real_cost = 331.740 T0284TS197_3-scwrl costs 0.000 real_cost = 323.560 T0284TS197_2-scwrl costs 0.000 real_cost = 346.049 T0284TS197_1-scwrl costs 0.000 real_cost = 300.003 T0284TS193_1-scwrl costs 0.000 real_cost = 330.342 T0284TS186_5-scwrl costs 0.000 real_cost = 273.913 T0284TS186_4-scwrl costs 0.000 real_cost = 135.052 T0284TS186_3-scwrl costs 0.000 real_cost = 146.714 T0284TS186_2-scwrl costs 0.000 real_cost = 119.483 T0284TS186_1-scwrl costs 0.000 real_cost = 116.621 T0284TS179_5-scwrl costs 0.000 real_cost = 198.218 T0284TS179_4-scwrl costs 0.000 real_cost = 198.091 T0284TS179_3-scwrl costs 0.000 real_cost = 195.494 T0284TS179_2-scwrl costs 0.000 real_cost = 214.187 T0284TS179_1-scwrl costs 0.000 real_cost = 222.043 T0284TS178_5-scwrl costs 0.000 real_cost = 189.902 T0284TS178_4-scwrl costs 0.000 real_cost = 188.896 T0284TS178_3-scwrl costs 0.000 real_cost = 184.896 T0284TS178_2-scwrl costs 0.000 real_cost = 164.784 T0284TS178_1-scwrl costs 0.000 real_cost = 149.386 T0284TS168_5-scwrl costs 0.000 real_cost = 132.798 T0284TS168_4-scwrl costs 0.000 real_cost = 130.242 T0284TS168_3-scwrl costs 0.000 real_cost = 123.254 T0284TS168_2-scwrl costs 0.000 real_cost = 128.088 T0284TS168_1-scwrl costs 0.000 real_cost = 118.979 T0284TS139_5-scwrl costs 0.000 real_cost = 323.504 T0284TS139_4-scwrl costs 0.000 real_cost = 347.959 T0284TS139_3-scwrl costs 0.000 real_cost = 334.759 T0284TS139_2-scwrl costs 0.000 real_cost = 334.924 T0284TS139_1-scwrl costs 0.000 real_cost = 358.041 T0284TS137_5-scwrl costs 0.000 real_cost = 311.851 T0284TS137_4-scwrl costs 0.000 real_cost = 341.901 T0284TS137_3-scwrl costs 0.000 real_cost = 348.358 T0284TS137_2-scwrl costs 0.000 real_cost = 308.084 T0284TS137_1-scwrl costs 0.000 real_cost = 142.767 T0284TS136_5-scwrl costs 0.000 real_cost = 287.695 T0284TS136_4-scwrl costs 0.000 real_cost = 346.401 T0284TS136_3-scwrl costs 0.000 real_cost = 290.810 T0284TS136_2-scwrl costs 0.000 real_cost = 141.584 T0284TS136_1-scwrl costs 0.000 real_cost = 140.837 T0284TS135_1-scwrl costs 0.000 real_cost = 126.227 T0284TS132_1-scwrl costs 0.000 real_cost = 207.069 T0284TS125_5u-scwrl costs 0.000 real_cost = 155.470 T0284TS125_5-scwrl costs 0.000 real_cost = 155.470 T0284TS125_4u-scwrl costs 0.000 real_cost = 134.799 T0284TS125_4-scwrl costs 0.000 real_cost = 134.799 T0284TS125_3u-scwrl costs 0.000 real_cost = 175.819 T0284TS125_3-scwrl costs 0.000 real_cost = 175.819 T0284TS125_2u-scwrl costs 0.000 real_cost = 178.474 T0284TS125_2-scwrl costs 0.000 real_cost = 178.474 T0284TS125_1u-scwrl costs 0.000 real_cost = 191.243 T0284TS125_1-scwrl costs 0.000 real_cost = 191.243 T0284TS113_5-scwrl costs 0.000 real_cost = 161.895 T0284TS113_4-scwrl costs 0.000 real_cost = 161.854 T0284TS113_3-scwrl costs 0.000 real_cost = 125.447 T0284TS113_2-scwrl costs 0.000 real_cost = 120.751 T0284TS113_1-scwrl costs 0.000 real_cost = 208.710 T0284TS111_4-scwrl costs 0.000 real_cost = 155.269 T0284TS111_3-scwrl costs 0.000 real_cost = 160.740 T0284TS111_2-scwrl costs 0.000 real_cost = 107.785 T0284TS111_1-scwrl costs 0.000 real_cost = 137.499 T0284TS105_5-scwrl costs 0.000 real_cost = 137.737 T0284TS105_4-scwrl costs 0.000 real_cost = 150.134 T0284TS105_3-scwrl costs 0.000 real_cost = 145.859 T0284TS105_2-scwrl costs 0.000 real_cost = 147.986 T0284TS105_1-scwrl costs 0.000 real_cost = 132.884 T0284TS103_1-scwrl costs 0.000 real_cost = 179.454 T0284TS102_5-scwrl costs 0.000 real_cost = 272.665 T0284TS102_4-scwrl costs 0.000 real_cost = 144.896 T0284TS102_3-scwrl costs 0.000 real_cost = 130.471 T0284TS102_2-scwrl costs 0.000 real_cost = 103.616 T0284TS102_1-scwrl costs 0.000 real_cost = 139.059 T0284TS092_5-scwrl costs 0.000 real_cost = 265.359 T0284TS092_4-scwrl costs 0.000 real_cost = 185.746 T0284TS092_3-scwrl costs 0.000 real_cost = 173.069 T0284TS092_2-scwrl costs 0.000 real_cost = 147.135 T0284TS092_1-scwrl costs 0.000 real_cost = 125.980 T0284TS091_5-scwrl costs 0.000 real_cost = 259.580 T0284TS091_4-scwrl costs 0.000 real_cost = 175.199 T0284TS091_3-scwrl costs 0.000 real_cost = 167.820 T0284TS091_2-scwrl costs 0.000 real_cost = 146.949 T0284TS091_1-scwrl costs 0.000 real_cost = 135.389 T0284TS087_5-scwrl costs 0.000 real_cost = 127.745 T0284TS087_4-scwrl costs 0.000 real_cost = 139.136 T0284TS087_3-scwrl costs 0.000 real_cost = 150.183 T0284TS087_2-scwrl costs 0.000 real_cost = 131.525 T0284TS087_1-scwrl costs 0.000 real_cost = 126.807 T0284TS083_5-scwrl costs 0.000 real_cost = 157.282 T0284TS083_4-scwrl costs 0.000 real_cost = 121.300 T0284TS083_3-scwrl costs 0.000 real_cost = 128.202 T0284TS083_2-scwrl costs 0.000 real_cost = 144.934 T0284TS083_1-scwrl costs 0.000 real_cost = 120.766 T0284TS074_3-scwrl costs 0.000 real_cost = 174.548 T0284TS074_2-scwrl costs 0.000 real_cost = 155.301 T0284TS074_1-scwrl costs 0.000 real_cost = 154.382 T0284TS071_5-scwrl costs 0.000 real_cost = 137.077 T0284TS071_4-scwrl costs 0.000 real_cost = 130.900 T0284TS071_3-scwrl costs 0.000 real_cost = 121.676 T0284TS071_2-scwrl costs 0.000 real_cost = 136.053 T0284TS071_1-scwrl costs 0.000 real_cost = 134.646 T0284TS064_1-scwrl costs 0.000 real_cost = 126.673 T0284TS063_4-scwrl costs 0.000 real_cost = 159.469 T0284TS063_3-scwrl costs 0.000 real_cost = 166.856 T0284TS063_2-scwrl costs 0.000 real_cost = 119.921 T0284TS063_1-scwrl costs 0.000 real_cost = 167.135 T0284TS060_5-scwrl costs 0.000 real_cost = 181.809 T0284TS060_4-scwrl costs 0.000 real_cost = 279.658 T0284TS060_3-scwrl costs 0.000 real_cost = 200.132 T0284TS060_2-scwrl costs 0.000 real_cost = 173.276 T0284TS060_1-scwrl costs 0.000 real_cost = 138.032 T0284TS054_1-scwrl costs 0.000 real_cost = 386.829 T0284TS050_5-scwrl costs 0.000 real_cost = 120.766 T0284TS050_4-scwrl costs 0.000 real_cost = 150.798 T0284TS050_3-scwrl costs 0.000 real_cost = 144.934 T0284TS050_2-scwrl costs 0.000 real_cost = 138.908 T0284TS050_1-scwrl costs 0.000 real_cost = 121.300 T0284TS047_5-scwrl costs 0.000 real_cost = 147.025 T0284TS047_4-scwrl costs 0.000 real_cost = 147.928 T0284TS047_3-scwrl costs 0.000 real_cost = 147.499 T0284TS047_2-scwrl costs 0.000 real_cost = 125.672 T0284TS047_1-scwrl costs 0.000 real_cost = 138.908 T0284TS046_5-scwrl costs 0.000 real_cost = 134.000 T0284TS046_4-scwrl costs 0.000 real_cost = 139.045 T0284TS046_3-scwrl costs 0.000 real_cost = 138.669 T0284TS046_2-scwrl costs 0.000 real_cost = 138.631 T0284TS046_1-scwrl costs 0.000 real_cost = 140.107 T0284TS038_3-scwrl costs 0.000 real_cost = 122.173 T0284TS038_2-scwrl costs 0.000 real_cost = 139.905 T0284TS038_1-scwrl costs 0.000 real_cost = 128.216 T0284TS035_5-scwrl costs 0.000 real_cost = 303.836 T0284TS035_4-scwrl costs 0.000 real_cost = 329.906 T0284TS035_3-scwrl costs 0.000 real_cost = 209.341 T0284TS035_2-scwrl costs 0.000 real_cost = 226.518 T0284TS035_1-scwrl costs 0.000 real_cost = 193.012 T0284TS034_5-scwrl costs 0.000 real_cost = 146.942 T0284TS034_4-scwrl costs 0.000 real_cost = 145.907 T0284TS034_3-scwrl costs 0.000 real_cost = 135.024 T0284TS034_2-scwrl costs 0.000 real_cost = 151.015 T0284TS034_1-scwrl costs 0.000 real_cost = 136.845 T0284TS028_5-scwrl costs 0.000 real_cost = 135.786 T0284TS028_4-scwrl costs 0.000 real_cost = 120.933 T0284TS028_3-scwrl costs 0.000 real_cost = 126.859 T0284TS028_2-scwrl costs 0.000 real_cost = 127.940 T0284TS028_1-scwrl costs 0.000 real_cost = 136.311 T0284TS027_5-scwrl costs 0.000 real_cost = 160.023 T0284TS027_4-scwrl costs 0.000 real_cost = 148.204 T0284TS027_3-scwrl costs 0.000 real_cost = 176.692 T0284TS027_2-scwrl costs 0.000 real_cost = 160.704 T0284TS027_1-scwrl costs 0.000 real_cost = 154.416 T0284TS026_5-scwrl costs 0.000 real_cost = 137.370 T0284TS026_4-scwrl costs 0.000 real_cost = 136.311 T0284TS026_3-scwrl costs 0.000 real_cost = 148.485 T0284TS026_2-scwrl costs 0.000 real_cost = 148.204 T0284TS026_1-scwrl costs 0.000 real_cost = 147.305 T0284TS025_5-scwrl costs 0.000 real_cost = 139.705 T0284TS025_4-scwrl costs 0.000 real_cost = 151.980 T0284TS025_3-scwrl costs 0.000 real_cost = 149.790 T0284TS025_2-scwrl costs 0.000 real_cost = 155.633 T0284TS025_1-scwrl costs 0.000 real_cost = 147.668 T0284TS024_5-scwrl costs 0.000 real_cost = 171.655 T0284TS024_4-scwrl costs 0.000 real_cost = 178.733 T0284TS024_3-scwrl costs 0.000 real_cost = 149.755 T0284TS024_2-scwrl costs 0.000 real_cost = 145.869 T0284TS024_1-scwrl costs 0.000 real_cost = 149.691 T0284TS022_5-scwrl costs 0.000 real_cost = 261.319 T0284TS022_4-scwrl costs 0.000 real_cost = 300.392 T0284TS022_3-scwrl costs 0.000 real_cost = 301.709 T0284TS022_2-scwrl costs 0.000 real_cost = 172.087 T0284TS022_1-scwrl costs 0.000 real_cost = 260.751 T0284TS021_1-scwrl costs 0.000 real_cost = 267.676 T0284TS020_5-scwrl costs 0.000 real_cost = 108.213 T0284TS020_4-scwrl costs 0.000 real_cost = 132.068 T0284TS020_3-scwrl costs 0.000 real_cost = 119.426 T0284TS020_2-scwrl costs 0.000 real_cost = 108.213 T0284TS020_1-scwrl costs 0.000 real_cost = 127.520 T0284TS013_1-scwrl costs 0.000 real_cost = 175.685 T0284TS011_1-scwrl costs 0.000 real_cost = 138.680 T0284TS010_5-scwrl costs 0.000 real_cost = 225.193 T0284TS010_4-scwrl costs 0.000 real_cost = 115.285 T0284TS010_3-scwrl costs 0.000 real_cost = 163.973 T0284TS010_2-scwrl costs 0.000 real_cost = 152.085 T0284TS010_1-scwrl costs 0.000 real_cost = 149.134 T0284TS005_1-scwrl costs 0.000 real_cost = 209.716 T0284AL706_1-scwrl costs 0.000 real_cost = 112.873 T0284AL556_5-scwrl costs 0.000 real_cost = 151.954 T0284AL556_4-scwrl costs 0.000 real_cost = 144.173 T0284AL556_3-scwrl costs 0.000 real_cost = 129.682 T0284AL556_2-scwrl costs 0.000 real_cost = 120.139 T0284AL556_1-scwrl costs 0.000 real_cost = 117.046 T0284AL381_5-scwrl costs 0.000 real_cost = 161.844 T0284AL381_4-scwrl costs 0.000 real_cost = 115.711 T0284AL381_3-scwrl costs 0.000 real_cost = 236.001 T0284AL381_2-scwrl costs 0.000 real_cost = 138.876 T0284AL381_1-scwrl costs 0.000 real_cost = 118.442 T0284AL380_5-scwrl costs 0.000 real_cost = 117.078 T0284AL380_4-scwrl costs 0.000 real_cost = 116.262 T0284AL380_3-scwrl costs 0.000 real_cost = 115.715 T0284AL380_2-scwrl costs 0.000 real_cost = 119.772 T0284AL380_1-scwrl costs 0.000 real_cost = 115.966 T0284AL316_5-scwrl costs 0.000 real_cost = 279.170 T0284AL316_4-scwrl costs 0.000 real_cost = 166.432 T0284AL316_3-scwrl costs 0.000 real_cost = 312.361 T0284AL316_2-scwrl costs 0.000 real_cost = 277.516 T0284AL316_1-scwrl costs 0.000 real_cost = 123.908 T0284AL257_5-scwrl costs 0.000 real_cost = 304.930 T0284AL257_4-scwrl costs 0.000 real_cost = 309.789 T0284AL257_3-scwrl costs 0.000 real_cost = 165.979 T0284AL257_2-scwrl costs 0.000 real_cost = 269.788 T0284AL257_1-scwrl costs 0.000 real_cost = 155.673 T0284AL243_5-scwrl costs 0.000 real_cost = 160.970 T0284AL243_3-scwrl costs 0.000 real_cost = 149.890 T0284AL243_2-scwrl costs 0.000 real_cost = 142.007 T0284AL243_1-scwrl costs 0.000 real_cost = 120.309 T0284AL242_5-scwrl costs 0.000 real_cost = 269.336 T0284AL242_4-scwrl costs 0.000 real_cost = 282.402 T0284AL242_3-scwrl costs 0.000 real_cost = 212.502 T0284AL242_2-scwrl costs 0.000 real_cost = 141.443 T0284AL242_1-scwrl costs 0.000 real_cost = 143.671 T0284AL170_5-scwrl costs 0.000 real_cost = 125.693 T0284AL170_4-scwrl costs 0.000 real_cost = 114.253 T0284AL170_3-scwrl costs 0.000 real_cost = 114.770 T0284AL170_2-scwrl costs 0.000 real_cost = 113.032 T0284AL170_1-scwrl costs 0.000 real_cost = 114.524 T0284AL044_5-scwrl costs 0.000 real_cost = 142.609 T0284AL044_4-scwrl costs 0.000 real_cost = 197.352 T0284AL044_3-scwrl costs 0.000 real_cost = 194.921 T0284AL044_2-scwrl costs 0.000 real_cost = 117.126 T0284AL044_1-scwrl costs 0.000 real_cost = 127.578 RT0284TS239_3-scwrl costs 0.000 real_cost = 235.381 RT0284TS239_1-scwrl costs 0.000 real_cost = 118.684 T0284TS721_5 costs 0.000 real_cost = 144.844 T0284TS721_4 costs 0.000 real_cost = 123.892 T0284TS721_3 costs 0.000 real_cost = 153.336 T0284TS721_2 costs 0.000 real_cost = 131.724 T0284TS721_1 costs 0.000 real_cost = 131.452 T0284TS710_5 costs 0.000 real_cost = 118.884 T0284TS710_4 costs 0.000 real_cost = 149.759 T0284TS710_3 costs 0.000 real_cost = 131.971 T0284TS710_2 costs 0.000 real_cost = 161.431 T0284TS710_1 costs 0.000 real_cost = 124.108 T0284TS698_1 costs 0.000 real_cost = 157.038 T0284TS677_2 costs 0.000 real_cost = 121.829 T0284TS677_1 costs 0.000 real_cost = 121.829 T0284TS675_5 costs 0.000 real_cost = 178.818 T0284TS675_4 costs 0.000 real_cost = 103.597 T0284TS675_3 costs 0.000 real_cost = 161.438 T0284TS675_2 costs 0.000 real_cost = 180.721 T0284TS675_1 costs 0.000 real_cost = 133.045 T0284TS671_5 costs 0.000 real_cost = 100.238 T0284TS671_4 costs 0.000 real_cost = 116.145 T0284TS671_3 costs 0.000 real_cost = 142.707 T0284TS671_2 costs 0.000 real_cost = 130.479 T0284TS671_1 costs 0.000 real_cost = 132.463 T0284TS664_5 costs 0.000 real_cost = 124.134 T0284TS664_4 costs 0.000 real_cost = 189.719 T0284TS664_3 costs 0.000 real_cost = 128.387 T0284TS664_2 costs 0.000 real_cost = 161.438 T0284TS664_1 costs 0.000 real_cost = 118.444 T0284TS659_3u costs 0.000 real_cost = 112.211 T0284TS659_2u costs 0.000 real_cost = 104.789 T0284TS659_1u costs 0.000 real_cost = 111.311 T0284TS658_1 costs 0.000 real_cost = 158.231 T0284TS654_1 costs 0.000 real_cost = 120.438 T0284TS651_1 costs 0.000 real_cost = 173.337 T0284TS650_1 costs 0.000 real_cost = 111.470 T0284TS641_1 costs 0.000 real_cost = 113.409 T0284TS640_1 costs 0.000 real_cost = 233.842 T0284TS601_5 costs 0.000 real_cost = 165.512 T0284TS601_4 costs 0.000 real_cost = 203.631 T0284TS601_3 costs 0.000 real_cost = 232.787 T0284TS601_2 costs 0.000 real_cost = 152.727 T0284TS601_1 costs 0.000 real_cost = 161.557 T0284TS568_5 costs 0.000 real_cost = 116.218 T0284TS568_4 costs 0.000 real_cost = 103.911 T0284TS568_3 costs 0.000 real_cost = 112.382 T0284TS568_2 costs 0.000 real_cost = 128.299 T0284TS568_1 costs 0.000 real_cost = 110.356 T0284TS556_5 costs 0.000 real_cost = 128.595 T0284TS556_4 costs 0.000 real_cost = 129.767 T0284TS556_3 costs 0.000 real_cost = 130.547 T0284TS556_2 costs 0.000 real_cost = 134.706 T0284TS556_1 costs 0.000 real_cost = 127.421 T0284TS550_3 costs 0.000 real_cost = 334.605 T0284TS550_2 costs 0.000 real_cost = 332.344 T0284TS550_1 costs 0.000 real_cost = 299.819 T0284TS536_5 costs 0.000 real_cost = 133.836 T0284TS536_4 costs 0.000 real_cost = 178.570 T0284TS536_3 costs 0.000 real_cost = 119.871 T0284TS536_2 costs 0.000 real_cost = 131.266 T0284TS536_1 costs 0.000 real_cost = 111.018 T0284TS527_1 costs 0.000 real_cost = 146.851 T0284TS511_1 costs 0.000 real_cost = 374.641 T0284TS502_1 costs 0.000 real_cost = 120.438 T0284TS490_1 costs 0.000 real_cost = 145.109 T0284TS469_5 costs 0.000 real_cost = 130.763 T0284TS469_4 costs 0.000 real_cost = 132.415 T0284TS469_3 costs 0.000 real_cost = 130.924 T0284TS469_2 costs 0.000 real_cost = 132.447 T0284TS469_1 costs 0.000 real_cost = 132.047 T0284TS468_1 costs 0.000 real_cost = 162.437 T0284TS443_1 costs 0.000 real_cost = 119.252 T0284TS439_1 costs 0.000 real_cost = 132.690 T0284TS435_5 costs 0.000 real_cost = 266.361 T0284TS435_4 costs 0.000 real_cost = 142.983 T0284TS435_3 costs 0.000 real_cost = 116.440 T0284TS435_2 costs 0.000 real_cost = 129.182 T0284TS435_1 costs 0.000 real_cost = 128.558 T0284TS427_5 costs 0.000 real_cost = 234.145 T0284TS427_4 costs 0.000 real_cost = 233.568 T0284TS427_3 costs 0.000 real_cost = 253.249 T0284TS427_2 costs 0.000 real_cost = 239.699 T0284TS427_1 costs 0.000 real_cost = 237.130 T0284TS420_5 costs 0.000 real_cost = 121.756 T0284TS420_4 costs 0.000 real_cost = 121.709 T0284TS420_3 costs 0.000 real_cost = 118.069 T0284TS420_2 costs 0.000 real_cost = 118.673 T0284TS420_1 costs 0.000 real_cost = 118.433 T0284TS418_1 costs 0.000 real_cost = 116.958 T0284TS416_2 costs 0.000 real_cost = 141.684 T0284TS416_1 costs 0.000 real_cost = 154.483 T0284TS415_5 costs 0.000 real_cost = 151.665 T0284TS415_4 costs 0.000 real_cost = 139.905 T0284TS415_3 costs 0.000 real_cost = 132.921 T0284TS415_2 costs 0.000 real_cost = 137.503 T0284TS415_1 costs 0.000 real_cost = 118.058 T0284TS414_5 costs 0.000 real_cost = 164.930 T0284TS414_4 costs 0.000 real_cost = 136.930 T0284TS414_3 costs 0.000 real_cost = 163.234 T0284TS414_2 costs 0.000 real_cost = 139.232 T0284TS414_1 costs 0.000 real_cost = 118.080 T0284TS413_5 costs 0.000 real_cost = 163.915 T0284TS413_4 costs 0.000 real_cost = 149.142 T0284TS413_3 costs 0.000 real_cost = 138.621 T0284TS413_2 costs 0.000 real_cost = 120.776 T0284TS413_1 costs 0.000 real_cost = 115.210 T0284TS401_3 costs 0.000 real_cost = 257.141 T0284TS401_2 costs 0.000 real_cost = 147.905 T0284TS401_1 costs 0.000 real_cost = 112.202 T0284TS393_5 costs 0.000 real_cost = 122.905 T0284TS393_4 costs 0.000 real_cost = 137.919 T0284TS393_3 costs 0.000 real_cost = 127.480 T0284TS393_2 costs 0.000 real_cost = 158.586 T0284TS393_1 costs 0.000 real_cost = 132.081 T0284TS389_5 costs 0.000 real_cost = 239.967 T0284TS389_4 costs 0.000 real_cost = 212.731 T0284TS389_3 costs 0.000 real_cost = 116.980 T0284TS389_2 costs 0.000 real_cost = 122.894 T0284TS389_1 costs 0.000 real_cost = 136.999 T0284TS383_5 costs 0.000 real_cost = 101.702 T0284TS383_4 costs 0.000 real_cost = 100.643 T0284TS383_3 costs 0.000 real_cost = 97.571 T0284TS383_2 costs 0.000 real_cost = 95.340 T0284TS383_1 costs 0.000 real_cost = 94.238 T0284TS368_3 costs 0.000 real_cost = 121.813 T0284TS368_2 costs 0.000 real_cost = 121.813 T0284TS368_1 costs 0.000 real_cost = 133.134 T0284TS351_5 costs 0.000 real_cost = 125.095 T0284TS351_4 costs 0.000 real_cost = 109.167 T0284TS351_3 costs 0.000 real_cost = 109.574 T0284TS351_2 costs 0.000 real_cost = 117.135 T0284TS351_1 costs 0.000 real_cost = 126.168 T0284TS349_5 costs 0.000 real_cost = 125.095 T0284TS349_4 costs 0.000 real_cost = 109.167 T0284TS349_3 costs 0.000 real_cost = 109.574 T0284TS349_2 costs 0.000 real_cost = 117.135 T0284TS349_1 costs 0.000 real_cost = 123.274 T0284TS347_1 costs 0.000 real_cost = 142.922 T0284TS338_2 costs 0.000 real_cost = 108.464 T0284TS338_1 costs 0.000 real_cost = 105.704 T0284TS337_5 costs 0.000 real_cost = 115.924 T0284TS337_4 costs 0.000 real_cost = 114.320 T0284TS337_3 costs 0.000 real_cost = 148.487 T0284TS337_2 costs 0.000 real_cost = 134.644 T0284TS337_1 costs 0.000 real_cost = 155.171 T0284TS319_5 costs 0.000 real_cost = 267.354 T0284TS319_4 costs 0.000 real_cost = 296.925 T0284TS319_3 costs 0.000 real_cost = 271.372 T0284TS319_2 costs 0.000 real_cost = 115.366 T0284TS319_1 costs 0.000 real_cost = 139.128 T0284TS318_5 costs 0.000 real_cost = 149.082 T0284TS318_4 costs 0.000 real_cost = 108.492 T0284TS318_3 costs 0.000 real_cost = 123.832 T0284TS318_2 costs 0.000 real_cost = 136.017 T0284TS318_1 costs 0.000 real_cost = 109.494 T0284TS307_5u costs 0.000 real_cost = 145.616 T0284TS307_5 costs 0.000 real_cost = 313.558 T0284TS307_4u costs 0.000 real_cost = 145.616 T0284TS307_4 costs 0.000 real_cost = 279.133 T0284TS307_3u costs 0.000 real_cost = 145.616 T0284TS307_3 costs 0.000 real_cost = 264.808 T0284TS307_2u costs 0.000 real_cost = 145.616 T0284TS307_2 costs 0.000 real_cost = 286.739 T0284TS307_1u costs 0.000 real_cost = 145.616 T0284TS307_1 costs 0.000 real_cost = 190.619 T0284TS302_5 costs 0.000 real_cost = 109.233 T0284TS302_4 costs 0.000 real_cost = 107.443 T0284TS302_3 costs 0.000 real_cost = 112.015 T0284TS302_2 costs 0.000 real_cost = 107.112 T0284TS302_1 costs 0.000 real_cost = 105.330 T0284TS298_5 costs 0.000 real_cost = 109.947 T0284TS298_4 costs 0.000 real_cost = 108.512 T0284TS298_3 costs 0.000 real_cost = 125.787 T0284TS298_2 costs 0.000 real_cost = 107.249 T0284TS298_1 costs 0.000 real_cost = 128.387 T0284TS297_5 costs 0.000 real_cost = 116.809 T0284TS297_4 costs 0.000 real_cost = 131.965 T0284TS297_3 costs 0.000 real_cost = 163.509 T0284TS297_2 costs 0.000 real_cost = 113.379 T0284TS297_1 costs 0.000 real_cost = 114.236 T0284TS277_5 costs 0.000 real_cost = 133.172 T0284TS277_4 costs 0.000 real_cost = 129.307 T0284TS277_3 costs 0.000 real_cost = 129.454 T0284TS277_2 costs 0.000 real_cost = 146.590 T0284TS277_1 costs 0.000 real_cost = 146.954 T0284TS276_5 costs 0.000 real_cost = 139.485 T0284TS276_4 costs 0.000 real_cost = 115.811 T0284TS276_3 costs 0.000 real_cost = 206.927 T0284TS276_2 costs 0.000 real_cost = 164.805 T0284TS276_1 costs 0.000 real_cost = 127.792 T0284TS275_1 costs 0.000 real_cost = 125.410 T0284TS274_1 costs 0.000 real_cost = 176.144 T0284TS273_1 costs 0.000 real_cost = 264.924 T0284TS268_5 costs 0.000 real_cost = 124.660 T0284TS268_4 costs 0.000 real_cost = 132.512 T0284TS268_3 costs 0.000 real_cost = 127.351 T0284TS268_2 costs 0.000 real_cost = 135.310 T0284TS268_1 costs 0.000 real_cost = 138.772 T0284TS267_5 costs 0.000 real_cost = 118.080 T0284TS267_4 costs 0.000 real_cost = 154.749 T0284TS267_3 costs 0.000 real_cost = 162.347 T0284TS267_2 costs 0.000 real_cost = 152.498 T0284TS267_1 costs 0.000 real_cost = 112.755 T0284TS261_1 costs 0.000 real_cost = 134.995 T0284TS250_5 costs 0.000 real_cost = 205.781 T0284TS250_4 costs 0.000 real_cost = 219.465 T0284TS250_3 costs 0.000 real_cost = 255.117 T0284TS250_2 costs 0.000 real_cost = 137.044 T0284TS250_1 costs 0.000 real_cost = 188.379 T0284TS249_1 costs 0.000 real_cost = 116.938 T0284TS248_5 costs 0.000 real_cost = 152.652 T0284TS248_4 costs 0.000 real_cost = 111.614 T0284TS248_3 costs 0.000 real_cost = 122.575 T0284TS248_2 costs 0.000 real_cost = 132.352 T0284TS248_1 costs 0.000 real_cost = 111.614 T0284TS247_5 costs 0.000 real_cost = 128.406 T0284TS247_4 costs 0.000 real_cost = 138.335 T0284TS247_3 costs 0.000 real_cost = 124.086 T0284TS247_2 costs 0.000 real_cost = 119.989 T0284TS247_1 costs 0.000 real_cost = 125.156 T0284TS245_1 costs 0.000 real_cost = 167.166 T0284TS239_5 costs 0.000 real_cost = 287.772 T0284TS239_4 costs 0.000 real_cost = 202.448 T0284TS239_3_3 costs 0.000 real_cost = 678.666 T0284TS239_3_2 costs 0.000 real_cost = 118.891 T0284TS239_3_1 costs 0.000 real_cost = 175.031 T0284TS239_2 costs 0.000 real_cost = 183.869 T0284TS239_1_2 costs 0.000 real_cost = 678.666 T0284TS239_1_1 costs 0.000 real_cost = 134.265 T0284TS234_1 costs 0.000 real_cost = 110.090 T0284TS224_1 costs 0.000 real_cost = 113.409 T0284TS214_1 costs 0.000 real_cost = 129.554 T0284TS213_1 costs 0.000 real_cost = 116.958 T0284TS212_1 costs 0.000 real_cost = 108.878 T0284TS211_5 costs 0.000 real_cost = 126.555 T0284TS211_4 costs 0.000 real_cost = 156.862 T0284TS211_3 costs 0.000 real_cost = 157.914 T0284TS211_2 costs 0.000 real_cost = 166.342 T0284TS211_1 costs 0.000 real_cost = 154.816 T0284TS209_5 costs 0.000 real_cost = 151.417 T0284TS209_4 costs 0.000 real_cost = 147.605 T0284TS209_3 costs 0.000 real_cost = 128.186 T0284TS209_2 costs 0.000 real_cost = 118.548 T0284TS209_1 costs 0.000 real_cost = 119.010 T0284TS205_5 costs 0.000 real_cost = 130.509 T0284TS205_4 costs 0.000 real_cost = 160.549 T0284TS205_3 costs 0.000 real_cost = 160.549 T0284TS205_2 costs 0.000 real_cost = 168.420 T0284TS205_1 costs 0.000 real_cost = 169.608 T0284TS203_5 costs 0.000 real_cost = 153.164 T0284TS203_4 costs 0.000 real_cost = 268.367 T0284TS203_2 costs 0.000 real_cost = 151.637 T0284TS203_1 costs 0.000 real_cost = 118.333 T0284TS197_5 costs 0.000 real_cost = 319.212 T0284TS197_4 costs 0.000 real_cost = 332.155 T0284TS197_3 costs 0.000 real_cost = 324.800 T0284TS197_2 costs 0.000 real_cost = 346.071 T0284TS197_1 costs 0.000 real_cost = 299.775 T0284TS193_1 costs 0.000 real_cost = 330.422 T0284TS186_5 costs 0.000 real_cost = 275.837 T0284TS186_4 costs 0.000 real_cost = 131.844 T0284TS186_3 costs 0.000 real_cost = 124.013 T0284TS186_2 costs 0.000 real_cost = 105.784 T0284TS186_1 costs 0.000 real_cost = 104.930 T0284TS179_5 costs 0.000 real_cost = 198.218 T0284TS179_4 costs 0.000 real_cost = 198.028 T0284TS179_3 costs 0.000 real_cost = 195.494 T0284TS179_2 costs 0.000 real_cost = 214.153 T0284TS179_1 costs 0.000 real_cost = 222.043 T0284TS178_5 costs 0.000 real_cost = 189.902 T0284TS178_4 costs 0.000 real_cost = 188.896 T0284TS178_3 costs 0.000 real_cost = 184.576 T0284TS178_2 costs 0.000 real_cost = 164.784 T0284TS178_1 costs 0.000 real_cost = 135.996 T0284TS168_5 costs 0.000 real_cost = 132.798 T0284TS168_4 costs 0.000 real_cost = 130.242 T0284TS168_3 costs 0.000 real_cost = 123.254 T0284TS168_2 costs 0.000 real_cost = 128.088 T0284TS168_1 costs 0.000 real_cost = 118.979 T0284TS139_5 costs 0.000 real_cost = 323.476 T0284TS139_4 costs 0.000 real_cost = 347.959 T0284TS139_3 costs 0.000 real_cost = 334.759 T0284TS139_2 costs 0.000 real_cost = 334.926 T0284TS139_1 costs 0.000 real_cost = 358.041 T0284TS137_5 costs 0.000 real_cost = 313.075 T0284TS137_4 costs 0.000 real_cost = 341.949 T0284TS137_3 costs 0.000 real_cost = 349.433 T0284TS137_2 costs 0.000 real_cost = 315.479 T0284TS137_1 costs 0.000 real_cost = 118.331 T0284TS136_5 costs 0.000 real_cost = 290.982 T0284TS136_4 costs 0.000 real_cost = 346.857 T0284TS136_3 costs 0.000 real_cost = 296.747 T0284TS136_2 costs 0.000 real_cost = 116.014 T0284TS136_1 costs 0.000 real_cost = 116.082 T0284TS135_1 costs 0.000 real_cost = 97.282 T0284TS132_1 costs 0.000 real_cost = 202.088 T0284TS125_5u costs 0.000 real_cost = 183.129 T0284TS125_4u costs 0.000 real_cost = 147.753 T0284TS125_3u costs 0.000 real_cost = 177.328 T0284TS125_2u costs 0.000 real_cost = 169.331 T0284TS125_1u costs 0.000 real_cost = 183.850 T0284TS113_5 costs 0.000 real_cost = 161.733 T0284TS113_4 costs 0.000 real_cost = 161.542 T0284TS113_3 costs 0.000 real_cost = 125.783 T0284TS113_2 costs 0.000 real_cost = 119.278 T0284TS113_1 costs 0.000 real_cost = 208.805 T0284TS111_4 costs 0.000 real_cost = 151.757 T0284TS111_3 costs 0.000 real_cost = 155.572 T0284TS111_2 costs 0.000 real_cost = 101.292 T0284TS111_1 costs 0.000 real_cost = 126.623 T0284TS105_5 costs 0.000 real_cost = 125.430 T0284TS105_4 costs 0.000 real_cost = 141.387 T0284TS105_3 costs 0.000 real_cost = 119.656 T0284TS105_2 costs 0.000 real_cost = 137.024 T0284TS105_1 costs 0.000 real_cost = 128.723 T0284TS103_1 costs 0.000 real_cost = 162.993 T0284TS102_5 costs 0.000 real_cost = 265.921 T0284TS102_4 costs 0.000 real_cost = 145.965 T0284TS102_3 costs 0.000 real_cost = 130.771 T0284TS102_2 costs 0.000 real_cost = 123.385 T0284TS102_1 costs 0.000 real_cost = 144.618 T0284TS092_5 costs 0.000 real_cost = 266.575 T0284TS092_4 costs 0.000 real_cost = 162.640 T0284TS092_3 costs 0.000 real_cost = 159.046 T0284TS092_2 costs 0.000 real_cost = 120.527 T0284TS092_1 costs 0.000 real_cost = 125.686 T0284TS091_5 costs 0.000 real_cost = 260.641 T0284TS091_4 costs 0.000 real_cost = 144.501 T0284TS091_3 costs 0.000 real_cost = 155.869 T0284TS091_2 costs 0.000 real_cost = 130.175 T0284TS091_1 costs 0.000 real_cost = 121.479 T0284TS087_5 costs 0.000 real_cost = 138.558 T0284TS087_4 costs 0.000 real_cost = 129.872 T0284TS087_3 costs 0.000 real_cost = 119.307 T0284TS087_2 costs 0.000 real_cost = 131.624 T0284TS087_1 costs 0.000 real_cost = 116.290 T0284TS083_5 costs 0.000 real_cost = 144.723 T0284TS083_4 costs 0.000 real_cost = 121.722 T0284TS083_3 costs 0.000 real_cost = 113.797 T0284TS083_2 costs 0.000 real_cost = 120.994 T0284TS083_1 costs 0.000 real_cost = 120.438 T0284TS074_3 costs 0.000 real_cost = 148.236 T0284TS074_2 costs 0.000 real_cost = 153.310 T0284TS074_1 costs 0.000 real_cost = 130.314 T0284TS071_5 costs 0.000 real_cost = 123.724 T0284TS071_4 costs 0.000 real_cost = 116.071 T0284TS071_3 costs 0.000 real_cost = 120.937 T0284TS071_2 costs 0.000 real_cost = 124.098 T0284TS071_1 costs 0.000 real_cost = 111.335 T0284TS064_1 costs 0.000 real_cost = 132.138 T0284TS063_4 costs 0.000 real_cost = 157.909 T0284TS063_3 costs 0.000 real_cost = 140.350 T0284TS063_2 costs 0.000 real_cost = 111.367 T0284TS063_1 costs 0.000 real_cost = 167.105 T0284TS060_5 costs 0.000 real_cost = 193.241 T0284TS060_4 costs 0.000 real_cost = 290.193 T0284TS060_3 costs 0.000 real_cost = 200.507 T0284TS060_2 costs 0.000 real_cost = 158.941 T0284TS060_1 costs 0.000 real_cost = 111.978 T0284TS054_1 costs 0.000 real_cost = 387.131 T0284TS050_5 costs 0.000 real_cost = 120.438 T0284TS050_4 costs 0.000 real_cost = 132.352 T0284TS050_3 costs 0.000 real_cost = 120.994 T0284TS050_2 costs 0.000 real_cost = 138.485 T0284TS050_1 costs 0.000 real_cost = 121.722 T0284TS047_5 costs 0.000 real_cost = 147.025 T0284TS047_4 costs 0.000 real_cost = 147.906 T0284TS047_3 costs 0.000 real_cost = 146.561 T0284TS047_2 costs 0.000 real_cost = 126.592 T0284TS047_1 costs 0.000 real_cost = 138.485 T0284TS046_5 costs 0.000 real_cost = 134.000 T0284TS046_4 costs 0.000 real_cost = 139.045 T0284TS046_3 costs 0.000 real_cost = 138.669 T0284TS046_2 costs 0.000 real_cost = 138.631 T0284TS046_1 costs 0.000 real_cost = 140.107 T0284TS038_3 costs 0.000 real_cost = 109.546 T0284TS038_2 costs 0.000 real_cost = 129.578 T0284TS038_1 costs 0.000 real_cost = 117.561 T0284TS035_5 costs 0.000 real_cost = 288.411 T0284TS035_4 costs 0.000 real_cost = 329.932 T0284TS035_3 costs 0.000 real_cost = 192.977 T0284TS035_2 costs 0.000 real_cost = 226.610 T0284TS035_1 costs 0.000 real_cost = 195.687 T0284TS034_5 costs 0.000 real_cost = 146.942 T0284TS034_4 costs 0.000 real_cost = 145.907 T0284TS034_3 costs 0.000 real_cost = 135.024 T0284TS034_2 costs 0.000 real_cost = 151.210 T0284TS034_1 costs 0.000 real_cost = 136.845 T0284TS028_5 costs 0.000 real_cost = 148.401 T0284TS028_4 costs 0.000 real_cost = 109.250 T0284TS028_3 costs 0.000 real_cost = 115.157 T0284TS028_2 costs 0.000 real_cost = 119.127 T0284TS028_1 costs 0.000 real_cost = 128.894 T0284TS027_5 costs 0.000 real_cost = 160.144 T0284TS027_4 costs 0.000 real_cost = 148.636 T0284TS027_3 costs 0.000 real_cost = 165.319 T0284TS027_2 costs 0.000 real_cost = 147.348 T0284TS027_1 costs 0.000 real_cost = 155.520 T0284TS026_5 costs 0.000 real_cost = 125.049 T0284TS026_4 costs 0.000 real_cost = 128.894 T0284TS026_3 costs 0.000 real_cost = 137.236 T0284TS026_2 costs 0.000 real_cost = 148.636 T0284TS026_1 costs 0.000 real_cost = 149.197 T0284TS025_5 costs 0.000 real_cost = 116.188 T0284TS025_4 costs 0.000 real_cost = 140.223 T0284TS025_3 costs 0.000 real_cost = 146.100 T0284TS025_2 costs 0.000 real_cost = 127.135 T0284TS025_1 costs 0.000 real_cost = 156.481 T0284TS024_5 costs 0.000 real_cost = 173.062 T0284TS024_4 costs 0.000 real_cost = 170.113 T0284TS024_3 costs 0.000 real_cost = 172.498 T0284TS024_2 costs 0.000 real_cost = 167.751 T0284TS024_1 costs 0.000 real_cost = 172.503 T0284TS022_5 costs 0.000 real_cost = 261.319 T0284TS022_4 costs 0.000 real_cost = 300.392 T0284TS022_3 costs 0.000 real_cost = 301.709 T0284TS022_2 costs 0.000 real_cost = 172.087 T0284TS022_1 costs 0.000 real_cost = 259.216 T0284TS021_1 costs 0.000 real_cost = 267.676 T0284TS020_5 costs 0.000 real_cost = 109.354 T0284TS020_4 costs 0.000 real_cost = 122.668 T0284TS020_3 costs 0.000 real_cost = 107.928 T0284TS020_2 costs 0.000 real_cost = 109.354 T0284TS020_1 costs 0.000 real_cost = 117.130 T0284TS013_1 costs 0.000 real_cost = 158.671 T0284TS011_1 costs 0.000 real_cost = 138.718 T0284TS010_5 costs 0.000 real_cost = 224.874 T0284TS010_4 costs 0.000 real_cost = 116.528 T0284TS010_3 costs 0.000 real_cost = 164.476 T0284TS010_2 costs 0.000 real_cost = 150.583 T0284TS010_1 costs 0.000 real_cost = 149.657 T0284TS005_1 costs 0.000 real_cost = 211.581 T0284AL706_1 costs 0.000 real_cost = 130.628 T0284AL556_5 costs 0.000 real_cost = 150.670 T0284AL556_4 costs 0.000 real_cost = 146.937 T0284AL556_3 costs 0.000 real_cost = 146.492 T0284AL556_2 costs 0.000 real_cost = 135.245 T0284AL556_1 costs 0.000 real_cost = 132.472 T0284AL381_5 costs 0.000 real_cost = 169.133 T0284AL381_4 costs 0.000 real_cost = 132.244 T0284AL381_3 costs 0.000 real_cost = 240.661 T0284AL381_2 costs 0.000 real_cost = 140.581 T0284AL381_1 costs 0.000 real_cost = 135.071 T0284AL380_5 costs 0.000 real_cost = 132.698 T0284AL380_4 costs 0.000 real_cost = 132.080 T0284AL380_3 costs 0.000 real_cost = 131.565 T0284AL380_2 costs 0.000 real_cost = 135.180 T0284AL380_1 costs 0.000 real_cost = 130.417 T0284AL316_5 costs 0.000 real_cost = 289.512 T0284AL316_4 costs 0.000 real_cost = 173.644 T0284AL316_3 costs 0.000 real_cost = 309.290 T0284AL316_2 costs 0.000 real_cost = 271.380 T0284AL316_1 costs 0.000 real_cost = 137.631 T0284AL257_5 costs 0.000 real_cost = 316.267 T0284AL257_4 costs 0.000 real_cost = 306.758 T0284AL257_3 costs 0.000 real_cost = 172.837 T0284AL257_2 costs 0.000 real_cost = 265.389 T0284AL257_1 costs 0.000 real_cost = 162.724 T0284AL243_5 costs 0.000 real_cost = 183.154 T0284AL243_3 costs 0.000 real_cost = 151.600 T0284AL243_2 costs 0.000 real_cost = 145.622 T0284AL243_1 costs 0.000 real_cost = 135.385 T0284AL242_5 costs 0.000 real_cost = 266.580 T0284AL242_4 costs 0.000 real_cost = 298.147 T0284AL242_3 costs 0.000 real_cost = 221.707 T0284AL242_2 costs 0.000 real_cost = 142.663 T0284AL242_1 costs 0.000 real_cost = 147.698 T0284AL170_5 costs 0.000 real_cost = 136.439 T0284AL170_4 costs 0.000 real_cost = 130.043 T0284AL170_3 costs 0.000 real_cost = 130.574 T0284AL170_2 costs 0.000 real_cost = 128.752 T0284AL170_1 costs 0.000 real_cost = 129.743 T0284AL044_5 costs 0.000 real_cost = 144.329 T0284AL044_4 costs 0.000 real_cost = 213.654 T0284AL044_3 costs 0.000 real_cost = 197.418 T0284AL044_2 costs 0.000 real_cost = 131.203 T0284AL044_1 costs 0.000 real_cost = 140.268 RT0284TS239_3 costs 0.000 real_cost = 242.729 RT0284TS239_1 costs 0.000 real_cost = 134.265 1oqfA costs 0.000 real_cost = -895.000 # command:CPU_time= 493.690 sec, elapsed time= 496.776 sec. # command:rm -f sort.tmp /projects/compbio/bin/sorttbl name < decoys/predictions.real-cost.rdb > sort.tmp mv -f sort.tmp decoys/predictions.real-cost.rdb rm decoys/scwrl-predictions.under