mkdir -p decoys rm decoys/read-pdb+servers.under cd decoys; shopt -s nullglob ; for x in ../*.ts-submitted* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in *.pdb* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in ../*mer/decoys/*.pdb* ; \ do echo ReadConformPDB $x chain A >> read-pdb+servers.under ; \ y=${x#../} ;\ z=${y/decoys} ;\ a=${z/T0284.} ;\ b=${a%.gz} ;\ c=${b%.pdb} ;\ echo NameConform $c >> read-pdb+servers.under ; \ done cd decoys; shopt -s nullglob ; for x in servers/*.pdb.gz ; do \ echo ReadConformPDB $x >> read-pdb+servers.under ; \ y=${x%.pdb.gz} ; \ z=${y#servers/} ; \ echo NameConform $z >> read-pdb+servers.under ; \ echo SCWRLConform >> read-pdb+servers.under ; \ echo NameConform $z-scwrl >> read-pdb+servers.under ; \ done chgrp protein decoys/read-pdb+servers.under chmod g+w decoys/read-pdb+servers.under rm -f decoys/evaluate.predburial.rdb sed -e s/XXX0000/T0284/ -e s/START_COL/1/ \ -e s/COSTFCN/predburial/ \ -e s/_domain// \ -e s/read-pdb/read-pdb+servers/ \ -e s/REAL_PDB// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /cse/grads/jarchie/projects/cvs/karplus/undertaker/undertaker # command:# Seed set to 1173464167 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 6.16706 sec, elapsed time= 6.27161 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 6.25105 sec, elapsed time= 6.38109 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0284 numbered 1 through 287 Created new target T0284 from T0284.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:Error: ReadConformPDBidsNo chains found for ID set: # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:# reading script from file predburial.costfcn # Read 5 alphabets from /projects/compbio/lib/alphabet/two-spot-burial.alphabet # created predicted BurialPredCostFcn pred_burial2k # created predicted BurialPredCostFcn pred_burial2k_simple # created predicted BurialPredCostFcn pred_burial04 # created predicted BurialPredCostFcn pred_burial04_simple # created predicted BurialPredCostFcn pred_burial06 # created predicted BurialPredCostFcn pred_burial06_simple # reading predictions from T0284.t2k.alpha.rdb # created predicted alpha cost function pred_alpha2k with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # reading predictions from T0284.t04.alpha.rdb # created predicted alpha cost function pred_alpha04 with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # reading predictions from T0284.t06.alpha.rdb # created predicted alpha cost function pred_alpha06 with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # SetCost created cost = # ( 15 * wet6.5(6.5, /log(length)) + 5 * near_backbone(9.65) + 5 * way_back(8.9) + 15 * dry5(5) + 20 * dry6.5(6.5) + 15 * dry8(8) + 5 * dry12(12) + 5 * pred_burial2k_simple(9.65) + 5 * pred_burial2k(9.65) + 5 * pred_burial04_simple(9.65) + 5 * pred_burial04(9.65) + 5 * pred_burial06_simple(9.65) + 5 * pred_burial06(9.65) + 2 * phobic_fit + 10 * n_ca_c + 20 * bad_peptide + 5 * sidechain + 8 * bystroff + 20 * soft_clashes + 2 * backbone_clashes + 50 * break + 3 * pred_alpha2k + 4 * pred_alpha04 + 5 * pred_alpha06 + 5 * hbond_geom + 10 * hbond_geom_backbone + 50 * hbond_geom_beta + 100 * hbond_geom_beta_pair + 1 * missing_atoms ) # command:CPU_time= 9.13561 sec, elapsed time= 10.144 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -6.70732 # GDT_score(maxd=8,maxw=2.9)= -5.99515 # GDT_score(maxd=8,maxw=3.2)= -5.84797 # GDT_score(maxd=8,maxw=3.5)= -5.7051 # GDT_score(maxd=10,maxw=3.8)= -6.3862 # GDT_score(maxd=10,maxw=4)= -6.27569 # GDT_score(maxd=10,maxw=4.2)= -6.15936 # GDT_score(maxd=12,maxw=4.3)= -6.95181 # GDT_score(maxd=12,maxw=4.5)= -6.81319 # GDT_score(maxd=12,maxw=4.7)= -6.68636 # GDT_score(maxd=14,maxw=5.2)= -7.19411 # GDT_score(maxd=14,maxw=5.5)= -7.01077 # command:# Prefix for output files set to # command:# command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1684610516.pdb -s /var/tmp/to_scwrl_1684610516.seq -o /var/tmp/from_scwrl_1684610516.pdb > /var/tmp/scwrl_1684610516.log Error: can't open any of /var/tmp/from_scwrl_1684610516.pdb or /var/tmp/from_scwrl_1684610516_b.pdb or /var/tmp/from_scwrl_1684610516_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -6.62021 # GDT_score(maxd=8,maxw=2.9)= -5.98542 # GDT_score(maxd=8,maxw=3.2)= -5.83885 # GDT_score(maxd=8,maxw=3.5)= -5.69677 # GDT_score(maxd=10,maxw=3.8)= -6.36107 # GDT_score(maxd=10,maxw=4)= -6.25119 # GDT_score(maxd=10,maxw=4.2)= -6.13603 # GDT_score(maxd=12,maxw=4.3)= -6.94174 # GDT_score(maxd=12,maxw=4.5)= -6.80357 # GDT_score(maxd=12,maxw=4.7)= -6.67715 # GDT_score(maxd=14,maxw=5.2)= -7.17298 # GDT_score(maxd=14,maxw=5.5)= -6.99078 # command:# request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1786187305.pdb -s /var/tmp/to_scwrl_1786187305.seq -o /var/tmp/from_scwrl_1786187305.pdb > /var/tmp/scwrl_1786187305.log Error: can't open any of /var/tmp/from_scwrl_1786187305.pdb or /var/tmp/from_scwrl_1786187305_b.pdb or /var/tmp/from_scwrl_1786187305_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.84669 # GDT_score = -6.09756 # GDT_score(maxd=8,maxw=2.9)= -5.53208 # GDT_score(maxd=8,maxw=3.2)= -5.4381 # GDT_score(maxd=8,maxw=3.5)= -5.36023 # GDT_score(maxd=10,maxw=3.8)= -5.88575 # GDT_score(maxd=10,maxw=4)= -5.81555 # GDT_score(maxd=10,maxw=4.2)= -5.73261 # GDT_score(maxd=12,maxw=4.3)= -6.34497 # GDT_score(maxd=12,maxw=4.5)= -6.2383 # GDT_score(maxd=12,maxw=4.7)= -6.12111 # GDT_score(maxd=14,maxw=5.2)= -6.43527 # GDT_score(maxd=14,maxw=5.5)= -6.22889 # command:# request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1836151823.pdb -s /var/tmp/to_scwrl_1836151823.seq -o /var/tmp/from_scwrl_1836151823.pdb > /var/tmp/scwrl_1836151823.log Error: can't open any of /var/tmp/from_scwrl_1836151823.pdb or /var/tmp/from_scwrl_1836151823_b.pdb or /var/tmp/from_scwrl_1836151823_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.965157 # GDT_score = -6.35889 # GDT_score(maxd=8,maxw=2.9)= -5.55296 # GDT_score(maxd=8,maxw=3.2)= -5.43817 # GDT_score(maxd=8,maxw=3.5)= -5.33043 # GDT_score(maxd=10,maxw=3.8)= -6.01595 # GDT_score(maxd=10,maxw=4)= -5.92421 # GDT_score(maxd=10,maxw=4.2)= -5.83357 # GDT_score(maxd=12,maxw=4.3)= -6.55827 # GDT_score(maxd=12,maxw=4.5)= -6.44264 # GDT_score(maxd=12,maxw=4.7)= -6.33158 # GDT_score(maxd=14,maxw=5.2)= -6.82362 # GDT_score(maxd=14,maxw=5.5)= -6.6479 # command:# request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1978600631.pdb -s /var/tmp/to_scwrl_1978600631.seq -o /var/tmp/from_scwrl_1978600631.pdb > /var/tmp/scwrl_1978600631.log Error: can't open any of /var/tmp/from_scwrl_1978600631.pdb or /var/tmp/from_scwrl_1978600631_b.pdb or /var/tmp/from_scwrl_1978600631_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.756098 # GDT_score = -5.92334 # GDT_score(maxd=8,maxw=2.9)= -5.52677 # GDT_score(maxd=8,maxw=3.2)= -5.36796 # GDT_score(maxd=8,maxw=3.5)= -5.22282 # GDT_score(maxd=10,maxw=3.8)= -5.81923 # GDT_score(maxd=10,maxw=4)= -5.6717 # GDT_score(maxd=10,maxw=4.2)= -5.53435 # GDT_score(maxd=12,maxw=4.3)= -6.32235 # GDT_score(maxd=12,maxw=4.5)= -6.16524 # GDT_score(maxd=12,maxw=4.7)= -6.02151 # GDT_score(maxd=14,maxw=5.2)= -6.38144 # GDT_score(maxd=14,maxw=5.5)= -6.18541 # command:# request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_27390281.pdb -s /var/tmp/to_scwrl_27390281.seq -o /var/tmp/from_scwrl_27390281.pdb > /var/tmp/scwrl_27390281.log Error: can't open any of /var/tmp/from_scwrl_27390281.pdb or /var/tmp/from_scwrl_27390281_b.pdb or /var/tmp/from_scwrl_27390281_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0284.try1-opt2.pdb looking for model 1 # Found a chain break before 221 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -7.14286 # GDT_score(maxd=8,maxw=2.9)= -6.38357 # GDT_score(maxd=8,maxw=3.2)= -6.1771 # GDT_score(maxd=8,maxw=3.5)= -6.00602 # GDT_score(maxd=10,maxw=3.8)= -6.7555 # GDT_score(maxd=10,maxw=4)= -6.62678 # GDT_score(maxd=10,maxw=4.2)= -6.50908 # GDT_score(maxd=12,maxw=4.3)= -7.31052 # GDT_score(maxd=12,maxw=4.5)= -7.16742 # GDT_score(maxd=12,maxw=4.7)= -7.02552 # GDT_score(maxd=14,maxw=5.2)= -7.45344 # GDT_score(maxd=14,maxw=5.5)= -7.23694 # command:# Prefix for output files set to # command:# command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0284.undertaker-align.pdb looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.916376 # GDT_score = -6.44599 # GDT_score(maxd=8,maxw=2.9)= -5.83832 # GDT_score(maxd=8,maxw=3.2)= -5.71563 # GDT_score(maxd=8,maxw=3.5)= -5.59803 # GDT_score(maxd=10,maxw=3.8)= -6.25555 # GDT_score(maxd=10,maxw=4)= -6.15183 # GDT_score(maxd=10,maxw=4.2)= -6.04259 # GDT_score(maxd=12,maxw=4.3)= -6.78579 # GDT_score(maxd=12,maxw=4.5)= -6.65455 # GDT_score(maxd=12,maxw=4.7)= -6.53447 # GDT_score(maxd=14,maxw=5.2)= -6.98345 # GDT_score(maxd=14,maxw=5.5)= -6.77155 # command:# ReadConformPDB reading from PDB file T0284.undertaker-align.pdb looking for model 2 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.961672 # GDT_score = -6.44599 # GDT_score(maxd=8,maxw=2.9)= -5.90104 # GDT_score(maxd=8,maxw=3.2)= -5.7398 # GDT_score(maxd=8,maxw=3.5)= -5.60621 # GDT_score(maxd=10,maxw=3.8)= -6.26979 # GDT_score(maxd=10,maxw=4)= -6.16536 # GDT_score(maxd=10,maxw=4.2)= -6.05939 # GDT_score(maxd=12,maxw=4.3)= -6.79227 # GDT_score(maxd=12,maxw=4.5)= -6.66263 # GDT_score(maxd=12,maxw=4.7)= -6.54221 # GDT_score(maxd=14,maxw=5.2)= -7.01588 # GDT_score(maxd=14,maxw=5.5)= -6.83432 # command:# ReadConformPDB reading from PDB file T0284.undertaker-align.pdb looking for model 3 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0284.undertaker-align.pdb looking for model 4 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0284.undertaker-align.pdb looking for model 5 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file T0284.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0284.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0284.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0284.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 221 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0284.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 221 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0284.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0284.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0284.try2-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0284.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0284.try2-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0284.try3-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0284.try3-opt1.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0284.try3-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0284.try3-opt2.pdb.gz looking for model 1 # Found a chain break before 254 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0284.try3-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 254 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera-try3-1zlpA.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model1.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model2.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model3.pdb.gz looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model4.pdb.gz looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model5.pdb.gz looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../dimer/decoys/T0284.try1-opt1-scwrl.pdb.gz looking for chain 'A' model 1 # Found a chain break before 257 # copying to AlignedFragments data structure # naming current conformation dimer//try1-opt1-scwrl # ReadConformPDB reading from PDB file ../dimer/decoys/T0284.try1-opt1.pdb.gz looking for chain 'A' model 1 # Found a chain break before 257 # copying to AlignedFragments data structure # naming current conformation dimer//try1-opt1 # ReadConformPDB reading from PDB file ../dimer/decoys/T0284.try1-opt2.gromacs0.pdb.gz looking for chain 'A' model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation dimer//try1-opt2.gromacs0 # ReadConformPDB reading from PDB file ../dimer/decoys/T0284.try1-opt2.pdb.gz looking for chain 'A' model 1 # Found a chain break before 257 # copying to AlignedFragments data structure # naming current conformation dimer//try1-opt2 # ReadConformPDB reading from PDB file ../dimer/decoys/T0284.try1-opt2.repack-nonPC.pdb.gz looking for chain 'A' model 1 # Found a chain break before 257 # copying to AlignedFragments data structure # naming current conformation dimer//try1-opt2.repack-nonPC # ReadConformPDB reading from PDB file ../dimer/decoys/T0284.try2-opt1-scwrl.pdb.gz looking for chain 'A' model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation dimer//try2-opt1-scwrl # ReadConformPDB reading from PDB file ../dimer/decoys/T0284.try2-opt1.pdb.gz looking for chain 'A' model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation dimer//try2-opt1 # ReadConformPDB reading from PDB file ../dimer/decoys/T0284.try2-opt2.gromacs0.pdb.gz looking for chain 'A' model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation dimer//try2-opt2.gromacs0 # ReadConformPDB reading from PDB file ../dimer/decoys/T0284.try2-opt2.pdb.gz looking for chain 'A' model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation dimer//try2-opt2 # ReadConformPDB reading from PDB file ../dimer/decoys/T0284.try2-opt2.repack-nonPC.pdb.gz looking for chain 'A' model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation dimer//try2-opt2.repack-nonPC # ReadConformPDB reading from PDB file ../dimer/decoys/T0284.try4-opt1-scwrl.pdb.gz looking for chain 'A' model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation dimer//try4-opt1-scwrl # ReadConformPDB reading from PDB file ../dimer/decoys/T0284.try4-opt1.pdb.gz looking for chain 'A' model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation dimer//try4-opt1 # ReadConformPDB reading from PDB file ../dimer/decoys/T0284.try4-opt2.gromacs0.pdb.gz looking for chain 'A' model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation dimer//try4-opt2.gromacs0 # ReadConformPDB reading from PDB file ../dimer/decoys/T0284.try4-opt2.pdb.gz looking for chain 'A' model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation dimer//try4-opt2 # ReadConformPDB reading from PDB file ../dimer/decoys/T0284.try4-opt2.repack-nonPC.pdb.gz looking for chain 'A' model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation dimer//try4-opt2.repack-nonPC # ReadConformPDB reading from PDB file ../dimer/decoys/T0284.try5-opt1-scwrl.pdb.gz looking for chain 'A' model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation dimer//try5-opt1-scwrl # ReadConformPDB reading from PDB file ../dimer/decoys/T0284.try5-opt1.pdb.gz looking for chain 'A' model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation dimer//try5-opt1 # ReadConformPDB reading from PDB file ../dimer/decoys/T0284.try5-opt2.gromacs0.pdb.gz looking for chain 'A' model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation dimer//try5-opt2.gromacs0 # ReadConformPDB reading from PDB file ../dimer/decoys/T0284.try5-opt2.pdb.gz looking for chain 'A' model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation dimer//try5-opt2 # ReadConformPDB reading from PDB file ../dimer/decoys/T0284.try5-opt2.repack-nonPC.pdb.gz looking for chain 'A' model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation dimer//try5-opt2.repack-nonPC # ReadConformPDB reading from PDB file ../dimer/decoys/T0284.try5-opt2.unpack.pdb.gz looking for chain 'A' model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation dimer//try5-opt2.unpack # ReadConformPDB reading from PDB file ../dimer/decoys/T0284.try6-opt1-scwrl.pdb.gz looking for chain 'A' model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation dimer//try6-opt1-scwrl # ReadConformPDB reading from PDB file ../dimer/decoys/T0284.try6-opt1.pdb.gz looking for chain 'A' model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation dimer//try6-opt1 # ReadConformPDB reading from PDB file ../dimer/decoys/T0284.try6-opt2.gromacs0.pdb.gz looking for chain 'A' model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation dimer//try6-opt2.gromacs0 # ReadConformPDB reading from PDB file ../dimer/decoys/T0284.try6-opt2.pdb.gz looking for chain 'A' model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation dimer//try6-opt2 # ReadConformPDB reading from PDB file ../dimer/decoys/T0284.try6-opt2.repack-nonPC.pdb.gz looking for chain 'A' model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation dimer//try6-opt2.repack-nonPC # ReadConformPDB reading from PDB file ../dimer/decoys/T0284.try6-opt2.unpack.pdb.gz looking for chain 'A' model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation dimer//try6-opt2.unpack # ReadConformPDB reading from PDB file ../dimer/decoys/T0284.try7-opt1-scwrl.pdb.gz looking for chain 'A' model 1 # Found a chain break before 238 # copying to AlignedFragments data structure # naming current conformation dimer//try7-opt1-scwrl # ReadConformPDB reading from PDB file ../dimer/decoys/T0284.try7-opt1.pdb.gz looking for chain 'A' model 1 # Found a chain break before 238 # copying to AlignedFragments data structure # naming current conformation dimer//try7-opt1 # ReadConformPDB reading from PDB file ../dimer/decoys/T0284.try7-opt2.gromacs0.pdb.gz looking for chain 'A' model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation dimer//try7-opt2.gromacs0 # ReadConformPDB reading from PDB file ../dimer/decoys/T0284.try7-opt2.pdb.gz looking for chain 'A' model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation dimer//try7-opt2 # ReadConformPDB reading from PDB file ../dimer/decoys/T0284.try7-opt2.repack-nonPC.pdb.gz looking for chain 'A' model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation dimer//try7-opt2.repack-nonPC # ReadConformPDB reading from PDB file ../dimer/decoys/T0284.try8-opt1-scwrl.pdb.gz looking for chain 'A' model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation dimer//try8-opt1-scwrl # ReadConformPDB reading from PDB file ../dimer/decoys/T0284.try8-opt1.pdb.gz looking for chain 'A' model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation dimer//try8-opt1 # ReadConformPDB reading from PDB file ../dimer/decoys/T0284.try8-opt2.gromacs0.pdb.gz looking for chain 'A' model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation dimer//try8-opt2.gromacs0 # ReadConformPDB reading from PDB file ../dimer/decoys/T0284.try8-opt2.pdb.gz looking for chain 'A' model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation dimer//try8-opt2 # ReadConformPDB reading from PDB file ../dimer/decoys/T0284.try8-opt2.repack-nonPC.pdb.gz looking for chain 'A' model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation dimer//try8-opt2.repack-nonPC # ReadConformPDB reading from PDB file ../dimer/decoys/T0284.try8-opt2.unpack.pdb.gz looking for chain 'A' model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation dimer//try8-opt2.unpack # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-1mumA-from-chimera-try3-1zlpA.pdb.gz looking for chain 'A' model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-1mumA-from-chimera-try3-1zlpA # ReadConformPDB reading from PDB file ../dimer/decoys/rotate1.pdb.gz looking for chain 'A' model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation dimer//rotate1 # ReadConformPDB reading from PDB file ../dimer/decoys/rotate2.pdb.gz looking for chain 'A' model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation dimer//rotate2 # ReadConformPDB reading from PDB file ../dimer/decoys/rotate3.pdb.gz looking for chain 'A' model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation dimer//rotate3 # ReadConformPDB reading from PDB file ../dimer/decoys/rotate4.pdb.gz looking for chain 'A' model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation dimer//rotate4 # ReadConformPDB reading from PDB file ../dimer/decoys/try5-opt2.proto.dimerTake1.pdb.gz looking for chain 'A' model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation dimer//try5-opt2.proto.dimerTake1 # ReadConformPDB reading from PDB file ../dimer/decoys/try5-opt2.proto.dimerTake2.pdb.gz looking for chain 'A' model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation dimer//try5-opt2.proto.dimerTake2 # ReadConformPDB reading from PDB file ../dimer/decoys/try5-opt2.proto.dimerTake3.pdb.gz looking for chain 'A' model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation dimer//try5-opt2.proto.dimerTake3 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1317366724.pdb -s /var/tmp/to_scwrl_1317366724.seq -o /var/tmp/from_scwrl_1317366724.pdb > /var/tmp/scwrl_1317366724.log Error: can't open any of /var/tmp/from_scwrl_1317366724.pdb or /var/tmp/from_scwrl_1317366724_b.pdb or /var/tmp/from_scwrl_1317366724_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_891284542.pdb -s /var/tmp/to_scwrl_891284542.seq -o /var/tmp/from_scwrl_891284542.pdb > /var/tmp/scwrl_891284542.log Error: can't open any of /var/tmp/from_scwrl_891284542.pdb or /var/tmp/from_scwrl_891284542_b.pdb or /var/tmp/from_scwrl_891284542_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1218755034.pdb -s /var/tmp/to_scwrl_1218755034.seq -o /var/tmp/from_scwrl_1218755034.pdb > /var/tmp/scwrl_1218755034.log Error: can't open any of /var/tmp/from_scwrl_1218755034.pdb or /var/tmp/from_scwrl_1218755034_b.pdb or /var/tmp/from_scwrl_1218755034_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_63495831.pdb -s /var/tmp/to_scwrl_63495831.seq -o /var/tmp/from_scwrl_63495831.pdb > /var/tmp/scwrl_63495831.log Error: can't open any of /var/tmp/from_scwrl_63495831.pdb or /var/tmp/from_scwrl_63495831_b.pdb or /var/tmp/from_scwrl_63495831_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1098263758.pdb -s /var/tmp/to_scwrl_1098263758.seq -o /var/tmp/from_scwrl_1098263758.pdb > /var/tmp/scwrl_1098263758.log Error: can't open any of /var/tmp/from_scwrl_1098263758.pdb or /var/tmp/from_scwrl_1098263758_b.pdb or /var/tmp/from_scwrl_1098263758_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1759215829.pdb -s /var/tmp/to_scwrl_1759215829.seq -o /var/tmp/from_scwrl_1759215829.pdb > /var/tmp/scwrl_1759215829.log Error: can't open any of /var/tmp/from_scwrl_1759215829.pdb or /var/tmp/from_scwrl_1759215829_b.pdb or /var/tmp/from_scwrl_1759215829_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_2049615127.pdb -s /var/tmp/to_scwrl_2049615127.seq -o /var/tmp/from_scwrl_2049615127.pdb > /var/tmp/scwrl_2049615127.log Error: can't open any of /var/tmp/from_scwrl_2049615127.pdb or /var/tmp/from_scwrl_2049615127_b.pdb or /var/tmp/from_scwrl_2049615127_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_736843615.pdb -s /var/tmp/to_scwrl_736843615.seq -o /var/tmp/from_scwrl_736843615.pdb > /var/tmp/scwrl_736843615.log Error: can't open any of /var/tmp/from_scwrl_736843615.pdb or /var/tmp/from_scwrl_736843615_b.pdb or /var/tmp/from_scwrl_736843615_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1843917323.pdb -s /var/tmp/to_scwrl_1843917323.seq -o /var/tmp/from_scwrl_1843917323.pdb > /var/tmp/scwrl_1843917323.log Error: can't open any of /var/tmp/from_scwrl_1843917323.pdb or /var/tmp/from_scwrl_1843917323_b.pdb or /var/tmp/from_scwrl_1843917323_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1797967970.pdb -s /var/tmp/to_scwrl_1797967970.seq -o /var/tmp/from_scwrl_1797967970.pdb > /var/tmp/scwrl_1797967970.log Error: can't open any of /var/tmp/from_scwrl_1797967970.pdb or /var/tmp/from_scwrl_1797967970_b.pdb or /var/tmp/from_scwrl_1797967970_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1508610194.pdb -s /var/tmp/to_scwrl_1508610194.seq -o /var/tmp/from_scwrl_1508610194.pdb > /var/tmp/scwrl_1508610194.log Error: can't open any of /var/tmp/from_scwrl_1508610194.pdb or /var/tmp/from_scwrl_1508610194_b.pdb or /var/tmp/from_scwrl_1508610194_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_747386149.pdb -s /var/tmp/to_scwrl_747386149.seq -o /var/tmp/from_scwrl_747386149.pdb > /var/tmp/scwrl_747386149.log Error: can't open any of /var/tmp/from_scwrl_747386149.pdb or /var/tmp/from_scwrl_747386149_b.pdb or /var/tmp/from_scwrl_747386149_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_506999241.pdb -s /var/tmp/to_scwrl_506999241.seq -o /var/tmp/from_scwrl_506999241.pdb > /var/tmp/scwrl_506999241.log Error: can't open any of /var/tmp/from_scwrl_506999241.pdb or /var/tmp/from_scwrl_506999241_b.pdb or /var/tmp/from_scwrl_506999241_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_811546253.pdb -s /var/tmp/to_scwrl_811546253.seq -o /var/tmp/from_scwrl_811546253.pdb > /var/tmp/scwrl_811546253.log Error: can't open any of /var/tmp/from_scwrl_811546253.pdb or /var/tmp/from_scwrl_811546253_b.pdb or /var/tmp/from_scwrl_811546253_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_780266383.pdb -s /var/tmp/to_scwrl_780266383.seq -o /var/tmp/from_scwrl_780266383.pdb > /var/tmp/scwrl_780266383.log Error: can't open any of /var/tmp/from_scwrl_780266383.pdb or /var/tmp/from_scwrl_780266383_b.pdb or /var/tmp/from_scwrl_780266383_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS5-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 268 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1040993052.pdb -s /var/tmp/to_scwrl_1040993052.seq -o /var/tmp/from_scwrl_1040993052.pdb > /var/tmp/scwrl_1040993052.log Error: can't open any of /var/tmp/from_scwrl_1040993052.pdb or /var/tmp/from_scwrl_1040993052_b.pdb or /var/tmp/from_scwrl_1040993052_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1170802710.pdb -s /var/tmp/to_scwrl_1170802710.seq -o /var/tmp/from_scwrl_1170802710.pdb > /var/tmp/scwrl_1170802710.log Error: can't open any of /var/tmp/from_scwrl_1170802710.pdb or /var/tmp/from_scwrl_1170802710_b.pdb or /var/tmp/from_scwrl_1170802710_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_436879969.pdb -s /var/tmp/to_scwrl_436879969.seq -o /var/tmp/from_scwrl_436879969.pdb > /var/tmp/scwrl_436879969.log Error: can't open any of /var/tmp/from_scwrl_436879969.pdb or /var/tmp/from_scwrl_436879969_b.pdb or /var/tmp/from_scwrl_436879969_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1212925820.pdb -s /var/tmp/to_scwrl_1212925820.seq -o /var/tmp/from_scwrl_1212925820.pdb > /var/tmp/scwrl_1212925820.log Error: can't open any of /var/tmp/from_scwrl_1212925820.pdb or /var/tmp/from_scwrl_1212925820_b.pdb or /var/tmp/from_scwrl_1212925820_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1062051219.pdb -s /var/tmp/to_scwrl_1062051219.seq -o /var/tmp/from_scwrl_1062051219.pdb > /var/tmp/scwrl_1062051219.log Error: can't open any of /var/tmp/from_scwrl_1062051219.pdb or /var/tmp/from_scwrl_1062051219_b.pdb or /var/tmp/from_scwrl_1062051219_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 231 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_690418095.pdb -s /var/tmp/to_scwrl_690418095.seq -o /var/tmp/from_scwrl_690418095.pdb > /var/tmp/scwrl_690418095.log Error: can't open any of /var/tmp/from_scwrl_690418095.pdb or /var/tmp/from_scwrl_690418095_b.pdb or /var/tmp/from_scwrl_690418095_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_917073580.pdb -s /var/tmp/to_scwrl_917073580.seq -o /var/tmp/from_scwrl_917073580.pdb > /var/tmp/scwrl_917073580.log Error: can't open any of /var/tmp/from_scwrl_917073580.pdb or /var/tmp/from_scwrl_917073580_b.pdb or /var/tmp/from_scwrl_917073580_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_2031159719.pdb -s /var/tmp/to_scwrl_2031159719.seq -o /var/tmp/from_scwrl_2031159719.pdb > /var/tmp/scwrl_2031159719.log Error: can't open any of /var/tmp/from_scwrl_2031159719.pdb or /var/tmp/from_scwrl_2031159719_b.pdb or /var/tmp/from_scwrl_2031159719_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 255 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1881511657.pdb -s /var/tmp/to_scwrl_1881511657.seq -o /var/tmp/from_scwrl_1881511657.pdb > /var/tmp/scwrl_1881511657.log Error: can't open any of /var/tmp/from_scwrl_1881511657.pdb or /var/tmp/from_scwrl_1881511657_b.pdb or /var/tmp/from_scwrl_1881511657_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 272 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_727626464.pdb -s /var/tmp/to_scwrl_727626464.seq -o /var/tmp/from_scwrl_727626464.pdb > /var/tmp/scwrl_727626464.log Error: can't open any of /var/tmp/from_scwrl_727626464.pdb or /var/tmp/from_scwrl_727626464_b.pdb or /var/tmp/from_scwrl_727626464_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1907543011.pdb -s /var/tmp/to_scwrl_1907543011.seq -o /var/tmp/from_scwrl_1907543011.pdb > /var/tmp/scwrl_1907543011.log Error: can't open any of /var/tmp/from_scwrl_1907543011.pdb or /var/tmp/from_scwrl_1907543011_b.pdb or /var/tmp/from_scwrl_1907543011_a.pdb Error: no new SCWRL conformation added # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1418638526.pdb -s /var/tmp/to_scwrl_1418638526.seq -o /var/tmp/from_scwrl_1418638526.pdb > /var/tmp/scwrl_1418638526.log Error: can't open any of /var/tmp/from_scwrl_1418638526.pdb or /var/tmp/from_scwrl_1418638526_b.pdb or /var/tmp/from_scwrl_1418638526_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_366330122.pdb -s /var/tmp/to_scwrl_366330122.seq -o /var/tmp/from_scwrl_366330122.pdb > /var/tmp/scwrl_366330122.log Error: can't open any of /var/tmp/from_scwrl_366330122.pdb or /var/tmp/from_scwrl_366330122_b.pdb or /var/tmp/from_scwrl_366330122_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1596211187.pdb -s /var/tmp/to_scwrl_1596211187.seq -o /var/tmp/from_scwrl_1596211187.pdb > /var/tmp/scwrl_1596211187.log Error: can't open any of /var/tmp/from_scwrl_1596211187.pdb or /var/tmp/from_scwrl_1596211187_b.pdb or /var/tmp/from_scwrl_1596211187_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1249755510.pdb -s /var/tmp/to_scwrl_1249755510.seq -o /var/tmp/from_scwrl_1249755510.pdb > /var/tmp/scwrl_1249755510.log Error: can't open any of /var/tmp/from_scwrl_1249755510.pdb or /var/tmp/from_scwrl_1249755510_b.pdb or /var/tmp/from_scwrl_1249755510_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_393720403.pdb -s /var/tmp/to_scwrl_393720403.seq -o /var/tmp/from_scwrl_393720403.pdb > /var/tmp/scwrl_393720403.log Error: can't open any of /var/tmp/from_scwrl_393720403.pdb or /var/tmp/from_scwrl_393720403_b.pdb or /var/tmp/from_scwrl_393720403_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_766094266.pdb -s /var/tmp/to_scwrl_766094266.seq -o /var/tmp/from_scwrl_766094266.pdb > /var/tmp/scwrl_766094266.log Error: can't open any of /var/tmp/from_scwrl_766094266.pdb or /var/tmp/from_scwrl_766094266_b.pdb or /var/tmp/from_scwrl_766094266_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_2141040052.pdb -s /var/tmp/to_scwrl_2141040052.seq -o /var/tmp/from_scwrl_2141040052.pdb > /var/tmp/scwrl_2141040052.log Error: can't open any of /var/tmp/from_scwrl_2141040052.pdb or /var/tmp/from_scwrl_2141040052_b.pdb or /var/tmp/from_scwrl_2141040052_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1612475438.pdb -s /var/tmp/to_scwrl_1612475438.seq -o /var/tmp/from_scwrl_1612475438.pdb > /var/tmp/scwrl_1612475438.log Error: can't open any of /var/tmp/from_scwrl_1612475438.pdb or /var/tmp/from_scwrl_1612475438_b.pdb or /var/tmp/from_scwrl_1612475438_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_829590097.pdb -s /var/tmp/to_scwrl_829590097.seq -o /var/tmp/from_scwrl_829590097.pdb > /var/tmp/scwrl_829590097.log Error: can't open any of /var/tmp/from_scwrl_829590097.pdb or /var/tmp/from_scwrl_829590097_b.pdb or /var/tmp/from_scwrl_829590097_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1091820163.pdb -s /var/tmp/to_scwrl_1091820163.seq -o /var/tmp/from_scwrl_1091820163.pdb > /var/tmp/scwrl_1091820163.log Error: can't open any of /var/tmp/from_scwrl_1091820163.pdb or /var/tmp/from_scwrl_1091820163_b.pdb or /var/tmp/from_scwrl_1091820163_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1224207620.pdb -s /var/tmp/to_scwrl_1224207620.seq -o /var/tmp/from_scwrl_1224207620.pdb > /var/tmp/scwrl_1224207620.log Error: can't open any of /var/tmp/from_scwrl_1224207620.pdb or /var/tmp/from_scwrl_1224207620_b.pdb or /var/tmp/from_scwrl_1224207620_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_731721577.pdb -s /var/tmp/to_scwrl_731721577.seq -o /var/tmp/from_scwrl_731721577.pdb > /var/tmp/scwrl_731721577.log Error: can't open any of /var/tmp/from_scwrl_731721577.pdb or /var/tmp/from_scwrl_731721577_b.pdb or /var/tmp/from_scwrl_731721577_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1828663778.pdb -s /var/tmp/to_scwrl_1828663778.seq -o /var/tmp/from_scwrl_1828663778.pdb > /var/tmp/scwrl_1828663778.log Error: can't open any of /var/tmp/from_scwrl_1828663778.pdb or /var/tmp/from_scwrl_1828663778_b.pdb or /var/tmp/from_scwrl_1828663778_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_920641298.pdb -s /var/tmp/to_scwrl_920641298.seq -o /var/tmp/from_scwrl_920641298.pdb > /var/tmp/scwrl_920641298.log Error: can't open any of /var/tmp/from_scwrl_920641298.pdb or /var/tmp/from_scwrl_920641298_b.pdb or /var/tmp/from_scwrl_920641298_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_382205901.pdb -s /var/tmp/to_scwrl_382205901.seq -o /var/tmp/from_scwrl_382205901.pdb > /var/tmp/scwrl_382205901.log Error: can't open any of /var/tmp/from_scwrl_382205901.pdb or /var/tmp/from_scwrl_382205901_b.pdb or /var/tmp/from_scwrl_382205901_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1189790325.pdb -s /var/tmp/to_scwrl_1189790325.seq -o /var/tmp/from_scwrl_1189790325.pdb > /var/tmp/scwrl_1189790325.log Error: can't open any of /var/tmp/from_scwrl_1189790325.pdb or /var/tmp/from_scwrl_1189790325_b.pdb or /var/tmp/from_scwrl_1189790325_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1668027446.pdb -s /var/tmp/to_scwrl_1668027446.seq -o /var/tmp/from_scwrl_1668027446.pdb > /var/tmp/scwrl_1668027446.log Error: can't open any of /var/tmp/from_scwrl_1668027446.pdb or /var/tmp/from_scwrl_1668027446_b.pdb or /var/tmp/from_scwrl_1668027446_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_889205142.pdb -s /var/tmp/to_scwrl_889205142.seq -o /var/tmp/from_scwrl_889205142.pdb > /var/tmp/scwrl_889205142.log Error: can't open any of /var/tmp/from_scwrl_889205142.pdb or /var/tmp/from_scwrl_889205142_b.pdb or /var/tmp/from_scwrl_889205142_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_2001336579.pdb -s /var/tmp/to_scwrl_2001336579.seq -o /var/tmp/from_scwrl_2001336579.pdb > /var/tmp/scwrl_2001336579.log Error: can't open any of /var/tmp/from_scwrl_2001336579.pdb or /var/tmp/from_scwrl_2001336579_b.pdb or /var/tmp/from_scwrl_2001336579_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_300810182.pdb -s /var/tmp/to_scwrl_300810182.seq -o /var/tmp/from_scwrl_300810182.pdb > /var/tmp/scwrl_300810182.log Error: can't open any of /var/tmp/from_scwrl_300810182.pdb or /var/tmp/from_scwrl_300810182_b.pdb or /var/tmp/from_scwrl_300810182_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1930198193.pdb -s /var/tmp/to_scwrl_1930198193.seq -o /var/tmp/from_scwrl_1930198193.pdb > /var/tmp/scwrl_1930198193.log Error: can't open any of /var/tmp/from_scwrl_1930198193.pdb or /var/tmp/from_scwrl_1930198193_b.pdb or /var/tmp/from_scwrl_1930198193_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1024655643.pdb -s /var/tmp/to_scwrl_1024655643.seq -o /var/tmp/from_scwrl_1024655643.pdb > /var/tmp/scwrl_1024655643.log Error: can't open any of /var/tmp/from_scwrl_1024655643.pdb or /var/tmp/from_scwrl_1024655643_b.pdb or /var/tmp/from_scwrl_1024655643_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_737690152.pdb -s /var/tmp/to_scwrl_737690152.seq -o /var/tmp/from_scwrl_737690152.pdb > /var/tmp/scwrl_737690152.log Error: can't open any of /var/tmp/from_scwrl_737690152.pdb or /var/tmp/from_scwrl_737690152_b.pdb or /var/tmp/from_scwrl_737690152_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_995640368.pdb -s /var/tmp/to_scwrl_995640368.seq -o /var/tmp/from_scwrl_995640368.pdb > /var/tmp/scwrl_995640368.log Error: can't open any of /var/tmp/from_scwrl_995640368.pdb or /var/tmp/from_scwrl_995640368_b.pdb or /var/tmp/from_scwrl_995640368_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_2086706861.pdb -s /var/tmp/to_scwrl_2086706861.seq -o /var/tmp/from_scwrl_2086706861.pdb > /var/tmp/scwrl_2086706861.log Error: can't open any of /var/tmp/from_scwrl_2086706861.pdb or /var/tmp/from_scwrl_2086706861_b.pdb or /var/tmp/from_scwrl_2086706861_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1428108246.pdb -s /var/tmp/to_scwrl_1428108246.seq -o /var/tmp/from_scwrl_1428108246.pdb > /var/tmp/scwrl_1428108246.log Error: can't open any of /var/tmp/from_scwrl_1428108246.pdb or /var/tmp/from_scwrl_1428108246_b.pdb or /var/tmp/from_scwrl_1428108246_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1912713947.pdb -s /var/tmp/to_scwrl_1912713947.seq -o /var/tmp/from_scwrl_1912713947.pdb > /var/tmp/scwrl_1912713947.log Error: can't open any of /var/tmp/from_scwrl_1912713947.pdb or /var/tmp/from_scwrl_1912713947_b.pdb or /var/tmp/from_scwrl_1912713947_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1970382934.pdb -s /var/tmp/to_scwrl_1970382934.seq -o /var/tmp/from_scwrl_1970382934.pdb > /var/tmp/scwrl_1970382934.log Error: can't open any of /var/tmp/from_scwrl_1970382934.pdb or /var/tmp/from_scwrl_1970382934_b.pdb or /var/tmp/from_scwrl_1970382934_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1162136256.pdb -s /var/tmp/to_scwrl_1162136256.seq -o /var/tmp/from_scwrl_1162136256.pdb > /var/tmp/scwrl_1162136256.log Error: can't open any of /var/tmp/from_scwrl_1162136256.pdb or /var/tmp/from_scwrl_1162136256_b.pdb or /var/tmp/from_scwrl_1162136256_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_492856764.pdb -s /var/tmp/to_scwrl_492856764.seq -o /var/tmp/from_scwrl_492856764.pdb > /var/tmp/scwrl_492856764.log Error: can't open any of /var/tmp/from_scwrl_492856764.pdb or /var/tmp/from_scwrl_492856764_b.pdb or /var/tmp/from_scwrl_492856764_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 268 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1730442298.pdb -s /var/tmp/to_scwrl_1730442298.seq -o /var/tmp/from_scwrl_1730442298.pdb > /var/tmp/scwrl_1730442298.log Error: can't open any of /var/tmp/from_scwrl_1730442298.pdb or /var/tmp/from_scwrl_1730442298_b.pdb or /var/tmp/from_scwrl_1730442298_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 268 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_433291136.pdb -s /var/tmp/to_scwrl_433291136.seq -o /var/tmp/from_scwrl_433291136.pdb > /var/tmp/scwrl_433291136.log Error: can't open any of /var/tmp/from_scwrl_433291136.pdb or /var/tmp/from_scwrl_433291136_b.pdb or /var/tmp/from_scwrl_433291136_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_859186886.pdb -s /var/tmp/to_scwrl_859186886.seq -o /var/tmp/from_scwrl_859186886.pdb > /var/tmp/scwrl_859186886.log Error: can't open any of /var/tmp/from_scwrl_859186886.pdb or /var/tmp/from_scwrl_859186886_b.pdb or /var/tmp/from_scwrl_859186886_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 264 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1179169839.pdb -s /var/tmp/to_scwrl_1179169839.seq -o /var/tmp/from_scwrl_1179169839.pdb > /var/tmp/scwrl_1179169839.log Error: can't open any of /var/tmp/from_scwrl_1179169839.pdb or /var/tmp/from_scwrl_1179169839_b.pdb or /var/tmp/from_scwrl_1179169839_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1683046646.pdb -s /var/tmp/to_scwrl_1683046646.seq -o /var/tmp/from_scwrl_1683046646.pdb > /var/tmp/scwrl_1683046646.log Error: can't open any of /var/tmp/from_scwrl_1683046646.pdb or /var/tmp/from_scwrl_1683046646_b.pdb or /var/tmp/from_scwrl_1683046646_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1252907288.pdb -s /var/tmp/to_scwrl_1252907288.seq -o /var/tmp/from_scwrl_1252907288.pdb > /var/tmp/scwrl_1252907288.log Error: can't open any of /var/tmp/from_scwrl_1252907288.pdb or /var/tmp/from_scwrl_1252907288_b.pdb or /var/tmp/from_scwrl_1252907288_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1945264105.pdb -s /var/tmp/to_scwrl_1945264105.seq -o /var/tmp/from_scwrl_1945264105.pdb > /var/tmp/scwrl_1945264105.log Error: can't open any of /var/tmp/from_scwrl_1945264105.pdb or /var/tmp/from_scwrl_1945264105_b.pdb or /var/tmp/from_scwrl_1945264105_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1676603051.pdb -s /var/tmp/to_scwrl_1676603051.seq -o /var/tmp/from_scwrl_1676603051.pdb > /var/tmp/scwrl_1676603051.log Error: can't open any of /var/tmp/from_scwrl_1676603051.pdb or /var/tmp/from_scwrl_1676603051_b.pdb or /var/tmp/from_scwrl_1676603051_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_717899080.pdb -s /var/tmp/to_scwrl_717899080.seq -o /var/tmp/from_scwrl_717899080.pdb > /var/tmp/scwrl_717899080.log Error: can't open any of /var/tmp/from_scwrl_717899080.pdb or /var/tmp/from_scwrl_717899080_b.pdb or /var/tmp/from_scwrl_717899080_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_627370555.pdb -s /var/tmp/to_scwrl_627370555.seq -o /var/tmp/from_scwrl_627370555.pdb > /var/tmp/scwrl_627370555.log Error: can't open any of /var/tmp/from_scwrl_627370555.pdb or /var/tmp/from_scwrl_627370555_b.pdb or /var/tmp/from_scwrl_627370555_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_620939569.pdb -s /var/tmp/to_scwrl_620939569.seq -o /var/tmp/from_scwrl_620939569.pdb > /var/tmp/scwrl_620939569.log Error: can't open any of /var/tmp/from_scwrl_620939569.pdb or /var/tmp/from_scwrl_620939569_b.pdb or /var/tmp/from_scwrl_620939569_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1942106701.pdb -s /var/tmp/to_scwrl_1942106701.seq -o /var/tmp/from_scwrl_1942106701.pdb > /var/tmp/scwrl_1942106701.log Error: can't open any of /var/tmp/from_scwrl_1942106701.pdb or /var/tmp/from_scwrl_1942106701_b.pdb or /var/tmp/from_scwrl_1942106701_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1359092132.pdb -s /var/tmp/to_scwrl_1359092132.seq -o /var/tmp/from_scwrl_1359092132.pdb > /var/tmp/scwrl_1359092132.log Error: can't open any of /var/tmp/from_scwrl_1359092132.pdb or /var/tmp/from_scwrl_1359092132_b.pdb or /var/tmp/from_scwrl_1359092132_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_302119700.pdb -s /var/tmp/to_scwrl_302119700.seq -o /var/tmp/from_scwrl_302119700.pdb > /var/tmp/scwrl_302119700.log Error: can't open any of /var/tmp/from_scwrl_302119700.pdb or /var/tmp/from_scwrl_302119700_b.pdb or /var/tmp/from_scwrl_302119700_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_715264352.pdb -s /var/tmp/to_scwrl_715264352.seq -o /var/tmp/from_scwrl_715264352.pdb > /var/tmp/scwrl_715264352.log Error: can't open any of /var/tmp/from_scwrl_715264352.pdb or /var/tmp/from_scwrl_715264352_b.pdb or /var/tmp/from_scwrl_715264352_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1741298033.pdb -s /var/tmp/to_scwrl_1741298033.seq -o /var/tmp/from_scwrl_1741298033.pdb > /var/tmp/scwrl_1741298033.log Error: can't open any of /var/tmp/from_scwrl_1741298033.pdb or /var/tmp/from_scwrl_1741298033_b.pdb or /var/tmp/from_scwrl_1741298033_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1491910026.pdb -s /var/tmp/to_scwrl_1491910026.seq -o /var/tmp/from_scwrl_1491910026.pdb > /var/tmp/scwrl_1491910026.log Error: can't open any of /var/tmp/from_scwrl_1491910026.pdb or /var/tmp/from_scwrl_1491910026_b.pdb or /var/tmp/from_scwrl_1491910026_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_235808151.pdb -s /var/tmp/to_scwrl_235808151.seq -o /var/tmp/from_scwrl_235808151.pdb > /var/tmp/scwrl_235808151.log Error: can't open any of /var/tmp/from_scwrl_235808151.pdb or /var/tmp/from_scwrl_235808151_b.pdb or /var/tmp/from_scwrl_235808151_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_483019528.pdb -s /var/tmp/to_scwrl_483019528.seq -o /var/tmp/from_scwrl_483019528.pdb > /var/tmp/scwrl_483019528.log Error: can't open any of /var/tmp/from_scwrl_483019528.pdb or /var/tmp/from_scwrl_483019528_b.pdb or /var/tmp/from_scwrl_483019528_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1345762958.pdb -s /var/tmp/to_scwrl_1345762958.seq -o /var/tmp/from_scwrl_1345762958.pdb > /var/tmp/scwrl_1345762958.log Error: can't open any of /var/tmp/from_scwrl_1345762958.pdb or /var/tmp/from_scwrl_1345762958_b.pdb or /var/tmp/from_scwrl_1345762958_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_536618334.pdb -s /var/tmp/to_scwrl_536618334.seq -o /var/tmp/from_scwrl_536618334.pdb > /var/tmp/scwrl_536618334.log Error: can't open any of /var/tmp/from_scwrl_536618334.pdb or /var/tmp/from_scwrl_536618334_b.pdb or /var/tmp/from_scwrl_536618334_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_265734075.pdb -s /var/tmp/to_scwrl_265734075.seq -o /var/tmp/from_scwrl_265734075.pdb > /var/tmp/scwrl_265734075.log Error: can't open any of /var/tmp/from_scwrl_265734075.pdb or /var/tmp/from_scwrl_265734075_b.pdb or /var/tmp/from_scwrl_265734075_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_222934954.pdb -s /var/tmp/to_scwrl_222934954.seq -o /var/tmp/from_scwrl_222934954.pdb > /var/tmp/scwrl_222934954.log Error: can't open any of /var/tmp/from_scwrl_222934954.pdb or /var/tmp/from_scwrl_222934954_b.pdb or /var/tmp/from_scwrl_222934954_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1274308485.pdb -s /var/tmp/to_scwrl_1274308485.seq -o /var/tmp/from_scwrl_1274308485.pdb > /var/tmp/scwrl_1274308485.log Error: can't open any of /var/tmp/from_scwrl_1274308485.pdb or /var/tmp/from_scwrl_1274308485_b.pdb or /var/tmp/from_scwrl_1274308485_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1261374442.pdb -s /var/tmp/to_scwrl_1261374442.seq -o /var/tmp/from_scwrl_1261374442.pdb > /var/tmp/scwrl_1261374442.log Error: can't open any of /var/tmp/from_scwrl_1261374442.pdb or /var/tmp/from_scwrl_1261374442_b.pdb or /var/tmp/from_scwrl_1261374442_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_162158168.pdb -s /var/tmp/to_scwrl_162158168.seq -o /var/tmp/from_scwrl_162158168.pdb > /var/tmp/scwrl_162158168.log Error: can't open any of /var/tmp/from_scwrl_162158168.pdb or /var/tmp/from_scwrl_162158168_b.pdb or /var/tmp/from_scwrl_162158168_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_554933085.pdb -s /var/tmp/to_scwrl_554933085.seq -o /var/tmp/from_scwrl_554933085.pdb > /var/tmp/scwrl_554933085.log Error: can't open any of /var/tmp/from_scwrl_554933085.pdb or /var/tmp/from_scwrl_554933085_b.pdb or /var/tmp/from_scwrl_554933085_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1026604743.pdb -s /var/tmp/to_scwrl_1026604743.seq -o /var/tmp/from_scwrl_1026604743.pdb > /var/tmp/scwrl_1026604743.log Error: can't open any of /var/tmp/from_scwrl_1026604743.pdb or /var/tmp/from_scwrl_1026604743_b.pdb or /var/tmp/from_scwrl_1026604743_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_2132541102.pdb -s /var/tmp/to_scwrl_2132541102.seq -o /var/tmp/from_scwrl_2132541102.pdb > /var/tmp/scwrl_2132541102.log Error: can't open any of /var/tmp/from_scwrl_2132541102.pdb or /var/tmp/from_scwrl_2132541102_b.pdb or /var/tmp/from_scwrl_2132541102_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1717069341.pdb -s /var/tmp/to_scwrl_1717069341.seq -o /var/tmp/from_scwrl_1717069341.pdb > /var/tmp/scwrl_1717069341.log Error: can't open any of /var/tmp/from_scwrl_1717069341.pdb or /var/tmp/from_scwrl_1717069341_b.pdb or /var/tmp/from_scwrl_1717069341_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1519461506.pdb -s /var/tmp/to_scwrl_1519461506.seq -o /var/tmp/from_scwrl_1519461506.pdb > /var/tmp/scwrl_1519461506.log Error: can't open any of /var/tmp/from_scwrl_1519461506.pdb or /var/tmp/from_scwrl_1519461506_b.pdb or /var/tmp/from_scwrl_1519461506_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # Found a chain break before 276 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1715499754.pdb -s /var/tmp/to_scwrl_1715499754.seq -o /var/tmp/from_scwrl_1715499754.pdb > /var/tmp/scwrl_1715499754.log Error: can't open any of /var/tmp/from_scwrl_1715499754.pdb or /var/tmp/from_scwrl_1715499754_b.pdb or /var/tmp/from_scwrl_1715499754_a.pdb Error: no new SCWRL conformation added # naming current conformation Frankenstein_TS1-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_2876830.pdb -s /var/tmp/to_scwrl_2876830.seq -o /var/tmp/from_scwrl_2876830.pdb > /var/tmp/scwrl_2876830.log Error: can't open any of /var/tmp/from_scwrl_2876830.pdb or /var/tmp/from_scwrl_2876830_b.pdb or /var/tmp/from_scwrl_2876830_a.pdb Error: no new SCWRL conformation added # naming current conformation Frankenstein_TS2-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS3.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_231164745.pdb -s /var/tmp/to_scwrl_231164745.seq -o /var/tmp/from_scwrl_231164745.pdb > /var/tmp/scwrl_231164745.log Error: can't open any of /var/tmp/from_scwrl_231164745.pdb or /var/tmp/from_scwrl_231164745_b.pdb or /var/tmp/from_scwrl_231164745_a.pdb Error: no new SCWRL conformation added # naming current conformation Frankenstein_TS3-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 263 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_747185947.pdb -s /var/tmp/to_scwrl_747185947.seq -o /var/tmp/from_scwrl_747185947.pdb > /var/tmp/scwrl_747185947.log Error: can't open any of /var/tmp/from_scwrl_747185947.pdb or /var/tmp/from_scwrl_747185947_b.pdb or /var/tmp/from_scwrl_747185947_a.pdb Error: no new SCWRL conformation added # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 237 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1685923476.pdb -s /var/tmp/to_scwrl_1685923476.seq -o /var/tmp/from_scwrl_1685923476.pdb > /var/tmp/scwrl_1685923476.log Error: can't open any of /var/tmp/from_scwrl_1685923476.pdb or /var/tmp/from_scwrl_1685923476_b.pdb or /var/tmp/from_scwrl_1685923476_a.pdb Error: no new SCWRL conformation added # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 237 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1484072033.pdb -s /var/tmp/to_scwrl_1484072033.seq -o /var/tmp/from_scwrl_1484072033.pdb > /var/tmp/scwrl_1484072033.log Error: can't open any of /var/tmp/from_scwrl_1484072033.pdb or /var/tmp/from_scwrl_1484072033_b.pdb or /var/tmp/from_scwrl_1484072033_a.pdb Error: no new SCWRL conformation added # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_544966405.pdb -s /var/tmp/to_scwrl_544966405.seq -o /var/tmp/from_scwrl_544966405.pdb > /var/tmp/scwrl_544966405.log Error: can't open any of /var/tmp/from_scwrl_544966405.pdb or /var/tmp/from_scwrl_544966405_b.pdb or /var/tmp/from_scwrl_544966405_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1215042880.pdb -s /var/tmp/to_scwrl_1215042880.seq -o /var/tmp/from_scwrl_1215042880.pdb > /var/tmp/scwrl_1215042880.log Error: can't open any of /var/tmp/from_scwrl_1215042880.pdb or /var/tmp/from_scwrl_1215042880_b.pdb or /var/tmp/from_scwrl_1215042880_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_54487467.pdb -s /var/tmp/to_scwrl_54487467.seq -o /var/tmp/from_scwrl_54487467.pdb > /var/tmp/scwrl_54487467.log Error: can't open any of /var/tmp/from_scwrl_54487467.pdb or /var/tmp/from_scwrl_54487467_b.pdb or /var/tmp/from_scwrl_54487467_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1172336959.pdb -s /var/tmp/to_scwrl_1172336959.seq -o /var/tmp/from_scwrl_1172336959.pdb > /var/tmp/scwrl_1172336959.log Error: can't open any of /var/tmp/from_scwrl_1172336959.pdb or /var/tmp/from_scwrl_1172336959_b.pdb or /var/tmp/from_scwrl_1172336959_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1835982449.pdb -s /var/tmp/to_scwrl_1835982449.seq -o /var/tmp/from_scwrl_1835982449.pdb > /var/tmp/scwrl_1835982449.log Error: can't open any of /var/tmp/from_scwrl_1835982449.pdb or /var/tmp/from_scwrl_1835982449_b.pdb or /var/tmp/from_scwrl_1835982449_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1996594168.pdb -s /var/tmp/to_scwrl_1996594168.seq -o /var/tmp/from_scwrl_1996594168.pdb > /var/tmp/scwrl_1996594168.log Error: can't open any of /var/tmp/from_scwrl_1996594168.pdb or /var/tmp/from_scwrl_1996594168_b.pdb or /var/tmp/from_scwrl_1996594168_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_383945445.pdb -s /var/tmp/to_scwrl_383945445.seq -o /var/tmp/from_scwrl_383945445.pdb > /var/tmp/scwrl_383945445.log Error: can't open any of /var/tmp/from_scwrl_383945445.pdb or /var/tmp/from_scwrl_383945445_b.pdb or /var/tmp/from_scwrl_383945445_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_2138102150.pdb -s /var/tmp/to_scwrl_2138102150.seq -o /var/tmp/from_scwrl_2138102150.pdb > /var/tmp/scwrl_2138102150.log Error: can't open any of /var/tmp/from_scwrl_2138102150.pdb or /var/tmp/from_scwrl_2138102150_b.pdb or /var/tmp/from_scwrl_2138102150_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_564374873.pdb -s /var/tmp/to_scwrl_564374873.seq -o /var/tmp/from_scwrl_564374873.pdb > /var/tmp/scwrl_564374873.log Error: can't open any of /var/tmp/from_scwrl_564374873.pdb or /var/tmp/from_scwrl_564374873_b.pdb or /var/tmp/from_scwrl_564374873_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_2125243478.pdb -s /var/tmp/to_scwrl_2125243478.seq -o /var/tmp/from_scwrl_2125243478.pdb > /var/tmp/scwrl_2125243478.log Error: can't open any of /var/tmp/from_scwrl_2125243478.pdb or /var/tmp/from_scwrl_2125243478_b.pdb or /var/tmp/from_scwrl_2125243478_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1482528529.pdb -s /var/tmp/to_scwrl_1482528529.seq -o /var/tmp/from_scwrl_1482528529.pdb > /var/tmp/scwrl_1482528529.log Error: can't open any of /var/tmp/from_scwrl_1482528529.pdb or /var/tmp/from_scwrl_1482528529_b.pdb or /var/tmp/from_scwrl_1482528529_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_800183024.pdb -s /var/tmp/to_scwrl_800183024.seq -o /var/tmp/from_scwrl_800183024.pdb > /var/tmp/scwrl_800183024.log Error: can't open any of /var/tmp/from_scwrl_800183024.pdb or /var/tmp/from_scwrl_800183024_b.pdb or /var/tmp/from_scwrl_800183024_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_460779360.pdb -s /var/tmp/to_scwrl_460779360.seq -o /var/tmp/from_scwrl_460779360.pdb > /var/tmp/scwrl_460779360.log Error: can't open any of /var/tmp/from_scwrl_460779360.pdb or /var/tmp/from_scwrl_460779360_b.pdb or /var/tmp/from_scwrl_460779360_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_680807841.pdb -s /var/tmp/to_scwrl_680807841.seq -o /var/tmp/from_scwrl_680807841.pdb > /var/tmp/scwrl_680807841.log Error: can't open any of /var/tmp/from_scwrl_680807841.pdb or /var/tmp/from_scwrl_680807841_b.pdb or /var/tmp/from_scwrl_680807841_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1336801357.pdb -s /var/tmp/to_scwrl_1336801357.seq -o /var/tmp/from_scwrl_1336801357.pdb > /var/tmp/scwrl_1336801357.log Error: can't open any of /var/tmp/from_scwrl_1336801357.pdb or /var/tmp/from_scwrl_1336801357_b.pdb or /var/tmp/from_scwrl_1336801357_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_726513435.pdb -s /var/tmp/to_scwrl_726513435.seq -o /var/tmp/from_scwrl_726513435.pdb > /var/tmp/scwrl_726513435.log Error: can't open any of /var/tmp/from_scwrl_726513435.pdb or /var/tmp/from_scwrl_726513435_b.pdb or /var/tmp/from_scwrl_726513435_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_903742795.pdb -s /var/tmp/to_scwrl_903742795.seq -o /var/tmp/from_scwrl_903742795.pdb > /var/tmp/scwrl_903742795.log Error: can't open any of /var/tmp/from_scwrl_903742795.pdb or /var/tmp/from_scwrl_903742795_b.pdb or /var/tmp/from_scwrl_903742795_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS2-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_463626196.pdb -s /var/tmp/to_scwrl_463626196.seq -o /var/tmp/from_scwrl_463626196.pdb > /var/tmp/scwrl_463626196.log Error: can't open any of /var/tmp/from_scwrl_463626196.pdb or /var/tmp/from_scwrl_463626196_b.pdb or /var/tmp/from_scwrl_463626196_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS3-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1987887877.pdb -s /var/tmp/to_scwrl_1987887877.seq -o /var/tmp/from_scwrl_1987887877.pdb > /var/tmp/scwrl_1987887877.log Error: can't open any of /var/tmp/from_scwrl_1987887877.pdb or /var/tmp/from_scwrl_1987887877_b.pdb or /var/tmp/from_scwrl_1987887877_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS4-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1065900963.pdb -s /var/tmp/to_scwrl_1065900963.seq -o /var/tmp/from_scwrl_1065900963.pdb > /var/tmp/scwrl_1065900963.log Error: can't open any of /var/tmp/from_scwrl_1065900963.pdb or /var/tmp/from_scwrl_1065900963_b.pdb or /var/tmp/from_scwrl_1065900963_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS5-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1018559281.pdb -s /var/tmp/to_scwrl_1018559281.seq -o /var/tmp/from_scwrl_1018559281.pdb > /var/tmp/scwrl_1018559281.log Error: can't open any of /var/tmp/from_scwrl_1018559281.pdb or /var/tmp/from_scwrl_1018559281_b.pdb or /var/tmp/from_scwrl_1018559281_a.pdb Error: no new SCWRL conformation added # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_867008973.pdb -s /var/tmp/to_scwrl_867008973.seq -o /var/tmp/from_scwrl_867008973.pdb > /var/tmp/scwrl_867008973.log Error: can't open any of /var/tmp/from_scwrl_867008973.pdb or /var/tmp/from_scwrl_867008973_b.pdb or /var/tmp/from_scwrl_867008973_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1050958419.pdb -s /var/tmp/to_scwrl_1050958419.seq -o /var/tmp/from_scwrl_1050958419.pdb > /var/tmp/scwrl_1050958419.log Error: can't open any of /var/tmp/from_scwrl_1050958419.pdb or /var/tmp/from_scwrl_1050958419_b.pdb or /var/tmp/from_scwrl_1050958419_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_588144975.pdb -s /var/tmp/to_scwrl_588144975.seq -o /var/tmp/from_scwrl_588144975.pdb > /var/tmp/scwrl_588144975.log Error: can't open any of /var/tmp/from_scwrl_588144975.pdb or /var/tmp/from_scwrl_588144975_b.pdb or /var/tmp/from_scwrl_588144975_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_238986832.pdb -s /var/tmp/to_scwrl_238986832.seq -o /var/tmp/from_scwrl_238986832.pdb > /var/tmp/scwrl_238986832.log Error: can't open any of /var/tmp/from_scwrl_238986832.pdb or /var/tmp/from_scwrl_238986832_b.pdb or /var/tmp/from_scwrl_238986832_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_618974526.pdb -s /var/tmp/to_scwrl_618974526.seq -o /var/tmp/from_scwrl_618974526.pdb > /var/tmp/scwrl_618974526.log Error: can't open any of /var/tmp/from_scwrl_618974526.pdb or /var/tmp/from_scwrl_618974526_b.pdb or /var/tmp/from_scwrl_618974526_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_591021805.pdb -s /var/tmp/to_scwrl_591021805.seq -o /var/tmp/from_scwrl_591021805.pdb > /var/tmp/scwrl_591021805.log Error: can't open any of /var/tmp/from_scwrl_591021805.pdb or /var/tmp/from_scwrl_591021805_b.pdb or /var/tmp/from_scwrl_591021805_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_470151577.pdb -s /var/tmp/to_scwrl_470151577.seq -o /var/tmp/from_scwrl_470151577.pdb > /var/tmp/scwrl_470151577.log Error: can't open any of /var/tmp/from_scwrl_470151577.pdb or /var/tmp/from_scwrl_470151577_b.pdb or /var/tmp/from_scwrl_470151577_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1366160472.pdb -s /var/tmp/to_scwrl_1366160472.seq -o /var/tmp/from_scwrl_1366160472.pdb > /var/tmp/scwrl_1366160472.log Error: can't open any of /var/tmp/from_scwrl_1366160472.pdb or /var/tmp/from_scwrl_1366160472_b.pdb or /var/tmp/from_scwrl_1366160472_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_129461634.pdb -s /var/tmp/to_scwrl_129461634.seq -o /var/tmp/from_scwrl_129461634.pdb > /var/tmp/scwrl_129461634.log Error: can't open any of /var/tmp/from_scwrl_129461634.pdb or /var/tmp/from_scwrl_129461634_b.pdb or /var/tmp/from_scwrl_129461634_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1954223610.pdb -s /var/tmp/to_scwrl_1954223610.seq -o /var/tmp/from_scwrl_1954223610.pdb > /var/tmp/scwrl_1954223610.log Error: can't open any of /var/tmp/from_scwrl_1954223610.pdb or /var/tmp/from_scwrl_1954223610_b.pdb or /var/tmp/from_scwrl_1954223610_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1911126877.pdb -s /var/tmp/to_scwrl_1911126877.seq -o /var/tmp/from_scwrl_1911126877.pdb > /var/tmp/scwrl_1911126877.log Error: can't open any of /var/tmp/from_scwrl_1911126877.pdb or /var/tmp/from_scwrl_1911126877_b.pdb or /var/tmp/from_scwrl_1911126877_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1344504515.pdb -s /var/tmp/to_scwrl_1344504515.seq -o /var/tmp/from_scwrl_1344504515.pdb > /var/tmp/scwrl_1344504515.log Error: can't open any of /var/tmp/from_scwrl_1344504515.pdb or /var/tmp/from_scwrl_1344504515_b.pdb or /var/tmp/from_scwrl_1344504515_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_2008711077.pdb -s /var/tmp/to_scwrl_2008711077.seq -o /var/tmp/from_scwrl_2008711077.pdb > /var/tmp/scwrl_2008711077.log Error: can't open any of /var/tmp/from_scwrl_2008711077.pdb or /var/tmp/from_scwrl_2008711077_b.pdb or /var/tmp/from_scwrl_2008711077_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_935980190.pdb -s /var/tmp/to_scwrl_935980190.seq -o /var/tmp/from_scwrl_935980190.pdb > /var/tmp/scwrl_935980190.log Error: can't open any of /var/tmp/from_scwrl_935980190.pdb or /var/tmp/from_scwrl_935980190_b.pdb or /var/tmp/from_scwrl_935980190_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1033003318.pdb -s /var/tmp/to_scwrl_1033003318.seq -o /var/tmp/from_scwrl_1033003318.pdb > /var/tmp/scwrl_1033003318.log Error: can't open any of /var/tmp/from_scwrl_1033003318.pdb or /var/tmp/from_scwrl_1033003318_b.pdb or /var/tmp/from_scwrl_1033003318_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1857821598.pdb -s /var/tmp/to_scwrl_1857821598.seq -o /var/tmp/from_scwrl_1857821598.pdb > /var/tmp/scwrl_1857821598.log Error: can't open any of /var/tmp/from_scwrl_1857821598.pdb or /var/tmp/from_scwrl_1857821598_b.pdb or /var/tmp/from_scwrl_1857821598_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1319925635.pdb -s /var/tmp/to_scwrl_1319925635.seq -o /var/tmp/from_scwrl_1319925635.pdb > /var/tmp/scwrl_1319925635.log Error: can't open any of /var/tmp/from_scwrl_1319925635.pdb or /var/tmp/from_scwrl_1319925635_b.pdb or /var/tmp/from_scwrl_1319925635_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1023621821.pdb -s /var/tmp/to_scwrl_1023621821.seq -o /var/tmp/from_scwrl_1023621821.pdb > /var/tmp/scwrl_1023621821.log Error: can't open any of /var/tmp/from_scwrl_1023621821.pdb or /var/tmp/from_scwrl_1023621821_b.pdb or /var/tmp/from_scwrl_1023621821_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_274712824.pdb -s /var/tmp/to_scwrl_274712824.seq -o /var/tmp/from_scwrl_274712824.pdb > /var/tmp/scwrl_274712824.log Error: can't open any of /var/tmp/from_scwrl_274712824.pdb or /var/tmp/from_scwrl_274712824_b.pdb or /var/tmp/from_scwrl_274712824_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1297685466.pdb -s /var/tmp/to_scwrl_1297685466.seq -o /var/tmp/from_scwrl_1297685466.pdb > /var/tmp/scwrl_1297685466.log Error: can't open any of /var/tmp/from_scwrl_1297685466.pdb or /var/tmp/from_scwrl_1297685466_b.pdb or /var/tmp/from_scwrl_1297685466_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_358666703.pdb -s /var/tmp/to_scwrl_358666703.seq -o /var/tmp/from_scwrl_358666703.pdb > /var/tmp/scwrl_358666703.log Error: can't open any of /var/tmp/from_scwrl_358666703.pdb or /var/tmp/from_scwrl_358666703_b.pdb or /var/tmp/from_scwrl_358666703_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1074895848.pdb -s /var/tmp/to_scwrl_1074895848.seq -o /var/tmp/from_scwrl_1074895848.pdb > /var/tmp/scwrl_1074895848.log Error: can't open any of /var/tmp/from_scwrl_1074895848.pdb or /var/tmp/from_scwrl_1074895848_b.pdb or /var/tmp/from_scwrl_1074895848_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1758464826.pdb -s /var/tmp/to_scwrl_1758464826.seq -o /var/tmp/from_scwrl_1758464826.pdb > /var/tmp/scwrl_1758464826.log Error: can't open any of /var/tmp/from_scwrl_1758464826.pdb or /var/tmp/from_scwrl_1758464826_b.pdb or /var/tmp/from_scwrl_1758464826_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 272 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1039474544.pdb -s /var/tmp/to_scwrl_1039474544.seq -o /var/tmp/from_scwrl_1039474544.pdb > /var/tmp/scwrl_1039474544.log Error: can't open any of /var/tmp/from_scwrl_1039474544.pdb or /var/tmp/from_scwrl_1039474544_b.pdb or /var/tmp/from_scwrl_1039474544_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 263 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_264213559.pdb -s /var/tmp/to_scwrl_264213559.seq -o /var/tmp/from_scwrl_264213559.pdb > /var/tmp/scwrl_264213559.log Error: can't open any of /var/tmp/from_scwrl_264213559.pdb or /var/tmp/from_scwrl_264213559_b.pdb or /var/tmp/from_scwrl_264213559_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_337494614.pdb -s /var/tmp/to_scwrl_337494614.seq -o /var/tmp/from_scwrl_337494614.pdb > /var/tmp/scwrl_337494614.log Error: can't open any of /var/tmp/from_scwrl_337494614.pdb or /var/tmp/from_scwrl_337494614_b.pdb or /var/tmp/from_scwrl_337494614_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1943217338.pdb -s /var/tmp/to_scwrl_1943217338.seq -o /var/tmp/from_scwrl_1943217338.pdb > /var/tmp/scwrl_1943217338.log Error: can't open any of /var/tmp/from_scwrl_1943217338.pdb or /var/tmp/from_scwrl_1943217338_b.pdb or /var/tmp/from_scwrl_1943217338_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_727839756.pdb -s /var/tmp/to_scwrl_727839756.seq -o /var/tmp/from_scwrl_727839756.pdb > /var/tmp/scwrl_727839756.log Error: can't open any of /var/tmp/from_scwrl_727839756.pdb or /var/tmp/from_scwrl_727839756_b.pdb or /var/tmp/from_scwrl_727839756_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_177898844.pdb -s /var/tmp/to_scwrl_177898844.seq -o /var/tmp/from_scwrl_177898844.pdb > /var/tmp/scwrl_177898844.log Error: can't open any of /var/tmp/from_scwrl_177898844.pdb or /var/tmp/from_scwrl_177898844_b.pdb or /var/tmp/from_scwrl_177898844_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_861634655.pdb -s /var/tmp/to_scwrl_861634655.seq -o /var/tmp/from_scwrl_861634655.pdb > /var/tmp/scwrl_861634655.log Error: can't open any of /var/tmp/from_scwrl_861634655.pdb or /var/tmp/from_scwrl_861634655_b.pdb or /var/tmp/from_scwrl_861634655_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1746399036.pdb -s /var/tmp/to_scwrl_1746399036.seq -o /var/tmp/from_scwrl_1746399036.pdb > /var/tmp/scwrl_1746399036.log Error: can't open any of /var/tmp/from_scwrl_1746399036.pdb or /var/tmp/from_scwrl_1746399036_b.pdb or /var/tmp/from_scwrl_1746399036_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1044907817.pdb -s /var/tmp/to_scwrl_1044907817.seq -o /var/tmp/from_scwrl_1044907817.pdb > /var/tmp/scwrl_1044907817.log Error: can't open any of /var/tmp/from_scwrl_1044907817.pdb or /var/tmp/from_scwrl_1044907817_b.pdb or /var/tmp/from_scwrl_1044907817_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1912593073.pdb -s /var/tmp/to_scwrl_1912593073.seq -o /var/tmp/from_scwrl_1912593073.pdb > /var/tmp/scwrl_1912593073.log Error: can't open any of /var/tmp/from_scwrl_1912593073.pdb or /var/tmp/from_scwrl_1912593073_b.pdb or /var/tmp/from_scwrl_1912593073_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_187060365.pdb -s /var/tmp/to_scwrl_187060365.seq -o /var/tmp/from_scwrl_187060365.pdb > /var/tmp/scwrl_187060365.log Error: can't open any of /var/tmp/from_scwrl_187060365.pdb or /var/tmp/from_scwrl_187060365_b.pdb or /var/tmp/from_scwrl_187060365_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1283894648.pdb -s /var/tmp/to_scwrl_1283894648.seq -o /var/tmp/from_scwrl_1283894648.pdb > /var/tmp/scwrl_1283894648.log Error: can't open any of /var/tmp/from_scwrl_1283894648.pdb or /var/tmp/from_scwrl_1283894648_b.pdb or /var/tmp/from_scwrl_1283894648_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 263 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_384083952.pdb -s /var/tmp/to_scwrl_384083952.seq -o /var/tmp/from_scwrl_384083952.pdb > /var/tmp/scwrl_384083952.log Error: can't open any of /var/tmp/from_scwrl_384083952.pdb or /var/tmp/from_scwrl_384083952_b.pdb or /var/tmp/from_scwrl_384083952_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_778082170.pdb -s /var/tmp/to_scwrl_778082170.seq -o /var/tmp/from_scwrl_778082170.pdb > /var/tmp/scwrl_778082170.log Error: can't open any of /var/tmp/from_scwrl_778082170.pdb or /var/tmp/from_scwrl_778082170_b.pdb or /var/tmp/from_scwrl_778082170_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1754046225.pdb -s /var/tmp/to_scwrl_1754046225.seq -o /var/tmp/from_scwrl_1754046225.pdb > /var/tmp/scwrl_1754046225.log Error: can't open any of /var/tmp/from_scwrl_1754046225.pdb or /var/tmp/from_scwrl_1754046225_b.pdb or /var/tmp/from_scwrl_1754046225_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1750244424.pdb -s /var/tmp/to_scwrl_1750244424.seq -o /var/tmp/from_scwrl_1750244424.pdb > /var/tmp/scwrl_1750244424.log Error: can't open any of /var/tmp/from_scwrl_1750244424.pdb or /var/tmp/from_scwrl_1750244424_b.pdb or /var/tmp/from_scwrl_1750244424_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 261 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_907543805.pdb -s /var/tmp/to_scwrl_907543805.seq -o /var/tmp/from_scwrl_907543805.pdb > /var/tmp/scwrl_907543805.log Error: can't open any of /var/tmp/from_scwrl_907543805.pdb or /var/tmp/from_scwrl_907543805_b.pdb or /var/tmp/from_scwrl_907543805_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1560786189.pdb -s /var/tmp/to_scwrl_1560786189.seq -o /var/tmp/from_scwrl_1560786189.pdb > /var/tmp/scwrl_1560786189.log Error: can't open any of /var/tmp/from_scwrl_1560786189.pdb or /var/tmp/from_scwrl_1560786189_b.pdb or /var/tmp/from_scwrl_1560786189_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1513887654.pdb -s /var/tmp/to_scwrl_1513887654.seq -o /var/tmp/from_scwrl_1513887654.pdb > /var/tmp/scwrl_1513887654.log Error: can't open any of /var/tmp/from_scwrl_1513887654.pdb or /var/tmp/from_scwrl_1513887654_b.pdb or /var/tmp/from_scwrl_1513887654_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_104564673.pdb -s /var/tmp/to_scwrl_104564673.seq -o /var/tmp/from_scwrl_104564673.pdb > /var/tmp/scwrl_104564673.log Error: can't open any of /var/tmp/from_scwrl_104564673.pdb or /var/tmp/from_scwrl_104564673_b.pdb or /var/tmp/from_scwrl_104564673_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1422013619.pdb -s /var/tmp/to_scwrl_1422013619.seq -o /var/tmp/from_scwrl_1422013619.pdb > /var/tmp/scwrl_1422013619.log Error: can't open any of /var/tmp/from_scwrl_1422013619.pdb or /var/tmp/from_scwrl_1422013619_b.pdb or /var/tmp/from_scwrl_1422013619_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_302384197.pdb -s /var/tmp/to_scwrl_302384197.seq -o /var/tmp/from_scwrl_302384197.pdb > /var/tmp/scwrl_302384197.log Error: can't open any of /var/tmp/from_scwrl_302384197.pdb or /var/tmp/from_scwrl_302384197_b.pdb or /var/tmp/from_scwrl_302384197_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1137567990.pdb -s /var/tmp/to_scwrl_1137567990.seq -o /var/tmp/from_scwrl_1137567990.pdb > /var/tmp/scwrl_1137567990.log Error: can't open any of /var/tmp/from_scwrl_1137567990.pdb or /var/tmp/from_scwrl_1137567990_b.pdb or /var/tmp/from_scwrl_1137567990_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1132351571.pdb -s /var/tmp/to_scwrl_1132351571.seq -o /var/tmp/from_scwrl_1132351571.pdb > /var/tmp/scwrl_1132351571.log Error: can't open any of /var/tmp/from_scwrl_1132351571.pdb or /var/tmp/from_scwrl_1132351571_b.pdb or /var/tmp/from_scwrl_1132351571_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T99_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1622309832.pdb -s /var/tmp/to_scwrl_1622309832.seq -o /var/tmp/from_scwrl_1622309832.pdb > /var/tmp/scwrl_1622309832.log Error: can't open any of /var/tmp/from_scwrl_1622309832.pdb or /var/tmp/from_scwrl_1622309832_b.pdb or /var/tmp/from_scwrl_1622309832_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T99_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_13706165.pdb -s /var/tmp/to_scwrl_13706165.seq -o /var/tmp/from_scwrl_13706165.pdb > /var/tmp/scwrl_13706165.log Error: can't open any of /var/tmp/from_scwrl_13706165.pdb or /var/tmp/from_scwrl_13706165_b.pdb or /var/tmp/from_scwrl_13706165_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T99_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1407064395.pdb -s /var/tmp/to_scwrl_1407064395.seq -o /var/tmp/from_scwrl_1407064395.pdb > /var/tmp/scwrl_1407064395.log Error: can't open any of /var/tmp/from_scwrl_1407064395.pdb or /var/tmp/from_scwrl_1407064395_b.pdb or /var/tmp/from_scwrl_1407064395_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T99_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_772511653.pdb -s /var/tmp/to_scwrl_772511653.seq -o /var/tmp/from_scwrl_772511653.pdb > /var/tmp/scwrl_772511653.log Error: can't open any of /var/tmp/from_scwrl_772511653.pdb or /var/tmp/from_scwrl_772511653_b.pdb or /var/tmp/from_scwrl_772511653_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T99_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_372372868.pdb -s /var/tmp/to_scwrl_372372868.seq -o /var/tmp/from_scwrl_372372868.pdb > /var/tmp/scwrl_372372868.log Error: can't open any of /var/tmp/from_scwrl_372372868.pdb or /var/tmp/from_scwrl_372372868_b.pdb or /var/tmp/from_scwrl_372372868_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_334476597.pdb -s /var/tmp/to_scwrl_334476597.seq -o /var/tmp/from_scwrl_334476597.pdb > /var/tmp/scwrl_334476597.log Error: can't open any of /var/tmp/from_scwrl_334476597.pdb or /var/tmp/from_scwrl_334476597_b.pdb or /var/tmp/from_scwrl_334476597_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_383492832.pdb -s /var/tmp/to_scwrl_383492832.seq -o /var/tmp/from_scwrl_383492832.pdb > /var/tmp/scwrl_383492832.log Error: can't open any of /var/tmp/from_scwrl_383492832.pdb or /var/tmp/from_scwrl_383492832_b.pdb or /var/tmp/from_scwrl_383492832_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1411847412.pdb -s /var/tmp/to_scwrl_1411847412.seq -o /var/tmp/from_scwrl_1411847412.pdb > /var/tmp/scwrl_1411847412.log Error: can't open any of /var/tmp/from_scwrl_1411847412.pdb or /var/tmp/from_scwrl_1411847412_b.pdb or /var/tmp/from_scwrl_1411847412_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_598690157.pdb -s /var/tmp/to_scwrl_598690157.seq -o /var/tmp/from_scwrl_598690157.pdb > /var/tmp/scwrl_598690157.log Error: can't open any of /var/tmp/from_scwrl_598690157.pdb or /var/tmp/from_scwrl_598690157_b.pdb or /var/tmp/from_scwrl_598690157_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_720987447.pdb -s /var/tmp/to_scwrl_720987447.seq -o /var/tmp/from_scwrl_720987447.pdb > /var/tmp/scwrl_720987447.log Error: can't open any of /var/tmp/from_scwrl_720987447.pdb or /var/tmp/from_scwrl_720987447_b.pdb or /var/tmp/from_scwrl_720987447_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1207581103.pdb -s /var/tmp/to_scwrl_1207581103.seq -o /var/tmp/from_scwrl_1207581103.pdb > /var/tmp/scwrl_1207581103.log Error: can't open any of /var/tmp/from_scwrl_1207581103.pdb or /var/tmp/from_scwrl_1207581103_b.pdb or /var/tmp/from_scwrl_1207581103_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1326529912.pdb -s /var/tmp/to_scwrl_1326529912.seq -o /var/tmp/from_scwrl_1326529912.pdb > /var/tmp/scwrl_1326529912.log Error: can't open any of /var/tmp/from_scwrl_1326529912.pdb or /var/tmp/from_scwrl_1326529912_b.pdb or /var/tmp/from_scwrl_1326529912_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 230 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_898886291.pdb -s /var/tmp/to_scwrl_898886291.seq -o /var/tmp/from_scwrl_898886291.pdb > /var/tmp/scwrl_898886291.log Error: can't open any of /var/tmp/from_scwrl_898886291.pdb or /var/tmp/from_scwrl_898886291_b.pdb or /var/tmp/from_scwrl_898886291_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 272 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_2069215758.pdb -s /var/tmp/to_scwrl_2069215758.seq -o /var/tmp/from_scwrl_2069215758.pdb > /var/tmp/scwrl_2069215758.log Error: can't open any of /var/tmp/from_scwrl_2069215758.pdb or /var/tmp/from_scwrl_2069215758_b.pdb or /var/tmp/from_scwrl_2069215758_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_925445302.pdb -s /var/tmp/to_scwrl_925445302.seq -o /var/tmp/from_scwrl_925445302.pdb > /var/tmp/scwrl_925445302.log Error: can't open any of /var/tmp/from_scwrl_925445302.pdb or /var/tmp/from_scwrl_925445302_b.pdb or /var/tmp/from_scwrl_925445302_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1943794108.pdb -s /var/tmp/to_scwrl_1943794108.seq -o /var/tmp/from_scwrl_1943794108.pdb > /var/tmp/scwrl_1943794108.log Error: can't open any of /var/tmp/from_scwrl_1943794108.pdb or /var/tmp/from_scwrl_1943794108_b.pdb or /var/tmp/from_scwrl_1943794108_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1834325184.pdb -s /var/tmp/to_scwrl_1834325184.seq -o /var/tmp/from_scwrl_1834325184.pdb > /var/tmp/scwrl_1834325184.log Error: can't open any of /var/tmp/from_scwrl_1834325184.pdb or /var/tmp/from_scwrl_1834325184_b.pdb or /var/tmp/from_scwrl_1834325184_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 257 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1112505666.pdb -s /var/tmp/to_scwrl_1112505666.seq -o /var/tmp/from_scwrl_1112505666.pdb > /var/tmp/scwrl_1112505666.log Error: can't open any of /var/tmp/from_scwrl_1112505666.pdb or /var/tmp/from_scwrl_1112505666_b.pdb or /var/tmp/from_scwrl_1112505666_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 242 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1080205109.pdb -s /var/tmp/to_scwrl_1080205109.seq -o /var/tmp/from_scwrl_1080205109.pdb > /var/tmp/scwrl_1080205109.log Error: can't open any of /var/tmp/from_scwrl_1080205109.pdb or /var/tmp/from_scwrl_1080205109_b.pdb or /var/tmp/from_scwrl_1080205109_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_70925489.pdb -s /var/tmp/to_scwrl_70925489.seq -o /var/tmp/from_scwrl_70925489.pdb > /var/tmp/scwrl_70925489.log Error: can't open any of /var/tmp/from_scwrl_70925489.pdb or /var/tmp/from_scwrl_70925489_b.pdb or /var/tmp/from_scwrl_70925489_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1890587837.pdb -s /var/tmp/to_scwrl_1890587837.seq -o /var/tmp/from_scwrl_1890587837.pdb > /var/tmp/scwrl_1890587837.log Error: can't open any of /var/tmp/from_scwrl_1890587837.pdb or /var/tmp/from_scwrl_1890587837_b.pdb or /var/tmp/from_scwrl_1890587837_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_686767689.pdb -s /var/tmp/to_scwrl_686767689.seq -o /var/tmp/from_scwrl_686767689.pdb > /var/tmp/scwrl_686767689.log Error: can't open any of /var/tmp/from_scwrl_686767689.pdb or /var/tmp/from_scwrl_686767689_b.pdb or /var/tmp/from_scwrl_686767689_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 255 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1821169913.pdb -s /var/tmp/to_scwrl_1821169913.seq -o /var/tmp/from_scwrl_1821169913.pdb > /var/tmp/scwrl_1821169913.log Error: can't open any of /var/tmp/from_scwrl_1821169913.pdb or /var/tmp/from_scwrl_1821169913_b.pdb or /var/tmp/from_scwrl_1821169913_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_650647995.pdb -s /var/tmp/to_scwrl_650647995.seq -o /var/tmp/from_scwrl_650647995.pdb > /var/tmp/scwrl_650647995.log Error: can't open any of /var/tmp/from_scwrl_650647995.pdb or /var/tmp/from_scwrl_650647995_b.pdb or /var/tmp/from_scwrl_650647995_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_100070231.pdb -s /var/tmp/to_scwrl_100070231.seq -o /var/tmp/from_scwrl_100070231.pdb > /var/tmp/scwrl_100070231.log Error: can't open any of /var/tmp/from_scwrl_100070231.pdb or /var/tmp/from_scwrl_100070231_b.pdb or /var/tmp/from_scwrl_100070231_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1187573920.pdb -s /var/tmp/to_scwrl_1187573920.seq -o /var/tmp/from_scwrl_1187573920.pdb > /var/tmp/scwrl_1187573920.log Error: can't open any of /var/tmp/from_scwrl_1187573920.pdb or /var/tmp/from_scwrl_1187573920_b.pdb or /var/tmp/from_scwrl_1187573920_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_755212668.pdb -s /var/tmp/to_scwrl_755212668.seq -o /var/tmp/from_scwrl_755212668.pdb > /var/tmp/scwrl_755212668.log Error: can't open any of /var/tmp/from_scwrl_755212668.pdb or /var/tmp/from_scwrl_755212668_b.pdb or /var/tmp/from_scwrl_755212668_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1522083850.pdb -s /var/tmp/to_scwrl_1522083850.seq -o /var/tmp/from_scwrl_1522083850.pdb > /var/tmp/scwrl_1522083850.log Error: can't open any of /var/tmp/from_scwrl_1522083850.pdb or /var/tmp/from_scwrl_1522083850_b.pdb or /var/tmp/from_scwrl_1522083850_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1489958118.pdb -s /var/tmp/to_scwrl_1489958118.seq -o /var/tmp/from_scwrl_1489958118.pdb > /var/tmp/scwrl_1489958118.log Error: can't open any of /var/tmp/from_scwrl_1489958118.pdb or /var/tmp/from_scwrl_1489958118_b.pdb or /var/tmp/from_scwrl_1489958118_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1892780658.pdb -s /var/tmp/to_scwrl_1892780658.seq -o /var/tmp/from_scwrl_1892780658.pdb > /var/tmp/scwrl_1892780658.log Error: can't open any of /var/tmp/from_scwrl_1892780658.pdb or /var/tmp/from_scwrl_1892780658_b.pdb or /var/tmp/from_scwrl_1892780658_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_506951775.pdb -s /var/tmp/to_scwrl_506951775.seq -o /var/tmp/from_scwrl_506951775.pdb > /var/tmp/scwrl_506951775.log Error: can't open any of /var/tmp/from_scwrl_506951775.pdb or /var/tmp/from_scwrl_506951775_b.pdb or /var/tmp/from_scwrl_506951775_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_964784304.pdb -s /var/tmp/to_scwrl_964784304.seq -o /var/tmp/from_scwrl_964784304.pdb > /var/tmp/scwrl_964784304.log Error: can't open any of /var/tmp/from_scwrl_964784304.pdb or /var/tmp/from_scwrl_964784304_b.pdb or /var/tmp/from_scwrl_964784304_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1906486823.pdb -s /var/tmp/to_scwrl_1906486823.seq -o /var/tmp/from_scwrl_1906486823.pdb > /var/tmp/scwrl_1906486823.log Error: can't open any of /var/tmp/from_scwrl_1906486823.pdb or /var/tmp/from_scwrl_1906486823_b.pdb or /var/tmp/from_scwrl_1906486823_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1914016171.pdb -s /var/tmp/to_scwrl_1914016171.seq -o /var/tmp/from_scwrl_1914016171.pdb > /var/tmp/scwrl_1914016171.log Error: can't open any of /var/tmp/from_scwrl_1914016171.pdb or /var/tmp/from_scwrl_1914016171_b.pdb or /var/tmp/from_scwrl_1914016171_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL5-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1737295956.pdb -s /var/tmp/to_scwrl_1737295956.seq -o /var/tmp/from_scwrl_1737295956.pdb > /var/tmp/scwrl_1737295956.log Error: can't open any of /var/tmp/from_scwrl_1737295956.pdb or /var/tmp/from_scwrl_1737295956_b.pdb or /var/tmp/from_scwrl_1737295956_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_131376045.pdb -s /var/tmp/to_scwrl_131376045.seq -o /var/tmp/from_scwrl_131376045.pdb > /var/tmp/scwrl_131376045.log Error: can't open any of /var/tmp/from_scwrl_131376045.pdb or /var/tmp/from_scwrl_131376045_b.pdb or /var/tmp/from_scwrl_131376045_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_101009121.pdb -s /var/tmp/to_scwrl_101009121.seq -o /var/tmp/from_scwrl_101009121.pdb > /var/tmp/scwrl_101009121.log Error: can't open any of /var/tmp/from_scwrl_101009121.pdb or /var/tmp/from_scwrl_101009121_b.pdb or /var/tmp/from_scwrl_101009121_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_2120788789.pdb -s /var/tmp/to_scwrl_2120788789.seq -o /var/tmp/from_scwrl_2120788789.pdb > /var/tmp/scwrl_2120788789.log Error: can't open any of /var/tmp/from_scwrl_2120788789.pdb or /var/tmp/from_scwrl_2120788789_b.pdb or /var/tmp/from_scwrl_2120788789_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1543223457.pdb -s /var/tmp/to_scwrl_1543223457.seq -o /var/tmp/from_scwrl_1543223457.pdb > /var/tmp/scwrl_1543223457.log Error: can't open any of /var/tmp/from_scwrl_1543223457.pdb or /var/tmp/from_scwrl_1543223457_b.pdb or /var/tmp/from_scwrl_1543223457_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_699699278.pdb -s /var/tmp/to_scwrl_699699278.seq -o /var/tmp/from_scwrl_699699278.pdb > /var/tmp/scwrl_699699278.log Error: can't open any of /var/tmp/from_scwrl_699699278.pdb or /var/tmp/from_scwrl_699699278_b.pdb or /var/tmp/from_scwrl_699699278_a.pdb Error: no new SCWRL conformation added # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_694292589.pdb -s /var/tmp/to_scwrl_694292589.seq -o /var/tmp/from_scwrl_694292589.pdb > /var/tmp/scwrl_694292589.log Error: can't open any of /var/tmp/from_scwrl_694292589.pdb or /var/tmp/from_scwrl_694292589_b.pdb or /var/tmp/from_scwrl_694292589_a.pdb Error: no new SCWRL conformation added # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_603320914.pdb -s /var/tmp/to_scwrl_603320914.seq -o /var/tmp/from_scwrl_603320914.pdb > /var/tmp/scwrl_603320914.log Error: can't open any of /var/tmp/from_scwrl_603320914.pdb or /var/tmp/from_scwrl_603320914_b.pdb or /var/tmp/from_scwrl_603320914_a.pdb Error: no new SCWRL conformation added # naming current conformation gtg_AL1-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_2026229190.pdb -s /var/tmp/to_scwrl_2026229190.seq -o /var/tmp/from_scwrl_2026229190.pdb > /var/tmp/scwrl_2026229190.log Error: can't open any of /var/tmp/from_scwrl_2026229190.pdb or /var/tmp/from_scwrl_2026229190_b.pdb or /var/tmp/from_scwrl_2026229190_a.pdb Error: no new SCWRL conformation added # naming current conformation gtg_AL2-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1593178879.pdb -s /var/tmp/to_scwrl_1593178879.seq -o /var/tmp/from_scwrl_1593178879.pdb > /var/tmp/scwrl_1593178879.log Error: can't open any of /var/tmp/from_scwrl_1593178879.pdb or /var/tmp/from_scwrl_1593178879_b.pdb or /var/tmp/from_scwrl_1593178879_a.pdb Error: no new SCWRL conformation added # naming current conformation gtg_AL3-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_525053026.pdb -s /var/tmp/to_scwrl_525053026.seq -o /var/tmp/from_scwrl_525053026.pdb > /var/tmp/scwrl_525053026.log Error: can't open any of /var/tmp/from_scwrl_525053026.pdb or /var/tmp/from_scwrl_525053026_b.pdb or /var/tmp/from_scwrl_525053026_a.pdb Error: no new SCWRL conformation added # naming current conformation gtg_AL4-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_804190846.pdb -s /var/tmp/to_scwrl_804190846.seq -o /var/tmp/from_scwrl_804190846.pdb > /var/tmp/scwrl_804190846.log Error: can't open any of /var/tmp/from_scwrl_804190846.pdb or /var/tmp/from_scwrl_804190846_b.pdb or /var/tmp/from_scwrl_804190846_a.pdb Error: no new SCWRL conformation added # naming current conformation gtg_AL5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1389489340.pdb -s /var/tmp/to_scwrl_1389489340.seq -o /var/tmp/from_scwrl_1389489340.pdb > /var/tmp/scwrl_1389489340.log Error: can't open any of /var/tmp/from_scwrl_1389489340.pdb or /var/tmp/from_scwrl_1389489340_b.pdb or /var/tmp/from_scwrl_1389489340_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 234 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_211894563.pdb -s /var/tmp/to_scwrl_211894563.seq -o /var/tmp/from_scwrl_211894563.pdb > /var/tmp/scwrl_211894563.log Error: can't open any of /var/tmp/from_scwrl_211894563.pdb or /var/tmp/from_scwrl_211894563_b.pdb or /var/tmp/from_scwrl_211894563_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1916696512.pdb -s /var/tmp/to_scwrl_1916696512.seq -o /var/tmp/from_scwrl_1916696512.pdb > /var/tmp/scwrl_1916696512.log Error: can't open any of /var/tmp/from_scwrl_1916696512.pdb or /var/tmp/from_scwrl_1916696512_b.pdb or /var/tmp/from_scwrl_1916696512_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_322210804.pdb -s /var/tmp/to_scwrl_322210804.seq -o /var/tmp/from_scwrl_322210804.pdb > /var/tmp/scwrl_322210804.log Error: can't open any of /var/tmp/from_scwrl_322210804.pdb or /var/tmp/from_scwrl_322210804_b.pdb or /var/tmp/from_scwrl_322210804_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_282820053.pdb -s /var/tmp/to_scwrl_282820053.seq -o /var/tmp/from_scwrl_282820053.pdb > /var/tmp/scwrl_282820053.log Error: can't open any of /var/tmp/from_scwrl_282820053.pdb or /var/tmp/from_scwrl_282820053_b.pdb or /var/tmp/from_scwrl_282820053_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1659800702.pdb -s /var/tmp/to_scwrl_1659800702.seq -o /var/tmp/from_scwrl_1659800702.pdb > /var/tmp/scwrl_1659800702.log Error: can't open any of /var/tmp/from_scwrl_1659800702.pdb or /var/tmp/from_scwrl_1659800702_b.pdb or /var/tmp/from_scwrl_1659800702_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.4_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1008978493.pdb -s /var/tmp/to_scwrl_1008978493.seq -o /var/tmp/from_scwrl_1008978493.pdb > /var/tmp/scwrl_1008978493.log Error: can't open any of /var/tmp/from_scwrl_1008978493.pdb or /var/tmp/from_scwrl_1008978493_b.pdb or /var/tmp/from_scwrl_1008978493_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_2103989966.pdb -s /var/tmp/to_scwrl_2103989966.seq -o /var/tmp/from_scwrl_2103989966.pdb > /var/tmp/scwrl_2103989966.log Error: can't open any of /var/tmp/from_scwrl_2103989966.pdb or /var/tmp/from_scwrl_2103989966_b.pdb or /var/tmp/from_scwrl_2103989966_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_162965050.pdb -s /var/tmp/to_scwrl_162965050.seq -o /var/tmp/from_scwrl_162965050.pdb > /var/tmp/scwrl_162965050.log Error: can't open any of /var/tmp/from_scwrl_162965050.pdb or /var/tmp/from_scwrl_162965050_b.pdb or /var/tmp/from_scwrl_162965050_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1109048723.pdb -s /var/tmp/to_scwrl_1109048723.seq -o /var/tmp/from_scwrl_1109048723.pdb > /var/tmp/scwrl_1109048723.log Error: can't open any of /var/tmp/from_scwrl_1109048723.pdb or /var/tmp/from_scwrl_1109048723_b.pdb or /var/tmp/from_scwrl_1109048723_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1144080240.pdb -s /var/tmp/to_scwrl_1144080240.seq -o /var/tmp/from_scwrl_1144080240.pdb > /var/tmp/scwrl_1144080240.log Error: can't open any of /var/tmp/from_scwrl_1144080240.pdb or /var/tmp/from_scwrl_1144080240_b.pdb or /var/tmp/from_scwrl_1144080240_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS5-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_918177718.pdb -s /var/tmp/to_scwrl_918177718.seq -o /var/tmp/from_scwrl_918177718.pdb > /var/tmp/scwrl_918177718.log Error: can't open any of /var/tmp/from_scwrl_918177718.pdb or /var/tmp/from_scwrl_918177718_b.pdb or /var/tmp/from_scwrl_918177718_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_483648927.pdb -s /var/tmp/to_scwrl_483648927.seq -o /var/tmp/from_scwrl_483648927.pdb > /var/tmp/scwrl_483648927.log Error: can't open any of /var/tmp/from_scwrl_483648927.pdb or /var/tmp/from_scwrl_483648927_b.pdb or /var/tmp/from_scwrl_483648927_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 261 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_486554712.pdb -s /var/tmp/to_scwrl_486554712.seq -o /var/tmp/from_scwrl_486554712.pdb > /var/tmp/scwrl_486554712.log Error: can't open any of /var/tmp/from_scwrl_486554712.pdb or /var/tmp/from_scwrl_486554712_b.pdb or /var/tmp/from_scwrl_486554712_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 262 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_663474730.pdb -s /var/tmp/to_scwrl_663474730.seq -o /var/tmp/from_scwrl_663474730.pdb > /var/tmp/scwrl_663474730.log Error: can't open any of /var/tmp/from_scwrl_663474730.pdb or /var/tmp/from_scwrl_663474730_b.pdb or /var/tmp/from_scwrl_663474730_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 257 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_990600703.pdb -s /var/tmp/to_scwrl_990600703.seq -o /var/tmp/from_scwrl_990600703.pdb > /var/tmp/scwrl_990600703.log Error: can't open any of /var/tmp/from_scwrl_990600703.pdb or /var/tmp/from_scwrl_990600703_b.pdb or /var/tmp/from_scwrl_990600703_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1451339015.pdb -s /var/tmp/to_scwrl_1451339015.seq -o /var/tmp/from_scwrl_1451339015.pdb > /var/tmp/scwrl_1451339015.log Error: can't open any of /var/tmp/from_scwrl_1451339015.pdb or /var/tmp/from_scwrl_1451339015_b.pdb or /var/tmp/from_scwrl_1451339015_a.pdb Error: no new SCWRL conformation added # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_422477906.pdb -s /var/tmp/to_scwrl_422477906.seq -o /var/tmp/from_scwrl_422477906.pdb > /var/tmp/scwrl_422477906.log Error: can't open any of /var/tmp/from_scwrl_422477906.pdb or /var/tmp/from_scwrl_422477906_b.pdb or /var/tmp/from_scwrl_422477906_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_757133227.pdb -s /var/tmp/to_scwrl_757133227.seq -o /var/tmp/from_scwrl_757133227.pdb > /var/tmp/scwrl_757133227.log Error: can't open any of /var/tmp/from_scwrl_757133227.pdb or /var/tmp/from_scwrl_757133227_b.pdb or /var/tmp/from_scwrl_757133227_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1041151326.pdb -s /var/tmp/to_scwrl_1041151326.seq -o /var/tmp/from_scwrl_1041151326.pdb > /var/tmp/scwrl_1041151326.log Error: can't open any of /var/tmp/from_scwrl_1041151326.pdb or /var/tmp/from_scwrl_1041151326_b.pdb or /var/tmp/from_scwrl_1041151326_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_553853951.pdb -s /var/tmp/to_scwrl_553853951.seq -o /var/tmp/from_scwrl_553853951.pdb > /var/tmp/scwrl_553853951.log Error: can't open any of /var/tmp/from_scwrl_553853951.pdb or /var/tmp/from_scwrl_553853951_b.pdb or /var/tmp/from_scwrl_553853951_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0284 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_858142348.pdb -s /var/tmp/to_scwrl_858142348.seq -o /var/tmp/from_scwrl_858142348.pdb > /var/tmp/scwrl_858142348.log Error: can't open any of /var/tmp/from_scwrl_858142348.pdb or /var/tmp/from_scwrl_858142348_b.pdb or /var/tmp/from_scwrl_858142348_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 259 ; scwrl -i /var/tmp/to_scwrl_1014456468.pdb -s /var/tmp/to_scwrl_1014456468.seq -o /var/tmp/from_scwrl_1014456468.pdb > /var/tmp/scwrl_1014456468.log Error: can't open any of /var/tmp/from_scwrl_1014456468.pdb or /var/tmp/from_scwrl_1014456468_b.pdb or /var/tmp/from_scwrl_1014456468_a.pdb Error: no new SCWRL conformation added # naming current conformation shub_TS1-scwrl # command:CPU_time= 54.7967 sec, elapsed time= 64.2815 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate.predburial.rdb # command:# CostConform shub_TS1-scwrl costs 313.561 real_cost = 412.039 nFOLD_TS5-scwrl costs 13183.3 real_cost = 609.965 nFOLD_TS4-scwrl costs 17175.3 real_cost = 578.634 nFOLD_TS3-scwrl costs 15910.8 real_cost = 601.62 nFOLD_TS2-scwrl costs 23979.4 real_cost = 582.465 nFOLD_TS1-scwrl costs 36463.4 real_cost = 571.906 mGen-3D_TS1-scwrl costs 36330.9 real_cost = 564.441 keasar-server_TS5-scwrl costs 290.93 real_cost = 402.305 keasar-server_TS4-scwrl costs 293.397 real_cost = 402.423 keasar-server_TS3-scwrl costs 290.925 real_cost = 402.381 keasar-server_TS2-scwrl costs 297.756 real_cost = 404.362 keasar-server_TS1-scwrl costs 300.661 real_cost = 404.234 karypis.srv_TS5-scwrl costs 592.062 real_cost = 461.08 karypis.srv_TS4-scwrl costs 338.004 real_cost = 404.856 karypis.srv_TS3-scwrl costs 596.253 real_cost = 480.589 karypis.srv_TS2-scwrl costs 271.126 real_cost = 400.054 karypis.srv_TS1-scwrl costs 491.082 real_cost = 445.266 karypis.srv.4_TS1-scwrl costs 504.503 real_cost = 419.257 karypis.srv.2_TS5-scwrl costs 270.832 real_cost = 407.627 karypis.srv.2_TS4-scwrl costs 270.516 real_cost = 406.353 karypis.srv.2_TS3-scwrl costs 271.428 real_cost = 410.775 karypis.srv.2_TS2-scwrl costs 263.383 real_cost = 404.414 karypis.srv.2_TS1-scwrl costs 291.263 real_cost = 404.421 gtg_AL5-scwrl costs 252387 real_cost = 628.633 gtg_AL4-scwrl costs 147189 real_cost = 654.542 gtg_AL3-scwrl costs 121055 real_cost = 633.761 gtg_AL2-scwrl costs 354581 real_cost = 649.215 gtg_AL1-scwrl costs 280769 real_cost = 635.671 beautshotbase_TS1-scwrl costs 360.745 real_cost = 412.499 beautshot_TS1-scwrl costs 310.841 real_cost = 416.749 Zhang-Server_TS5-scwrl costs 279.949 real_cost = 406.683 Zhang-Server_TS4-scwrl costs 283.859 real_cost = 414.622 Zhang-Server_TS3-scwrl costs 276.451 real_cost = 402.59 Zhang-Server_TS2-scwrl costs 278.743 real_cost = 403.853 Zhang-Server_TS1-scwrl costs 277.745 real_cost = 405.463 UNI-EID_sfst_AL5-scwrl costs 177710 real_cost = 637.764 UNI-EID_sfst_AL3-scwrl costs 252158 real_cost = 627.126 UNI-EID_sfst_AL2-scwrl costs 172142 real_cost = 631.833 UNI-EID_sfst_AL1-scwrl costs 302914 real_cost = 616.529 UNI-EID_expm_TS1-scwrl costs 37167.6 real_cost = 569.916 UNI-EID_bnmx_TS5-scwrl costs 3162.84 real_cost = 718.579 UNI-EID_bnmx_TS4-scwrl costs 3157.76 real_cost = 730.238 UNI-EID_bnmx_TS3-scwrl costs 3156.74 real_cost = 729.955 UNI-EID_bnmx_TS2-scwrl costs 3160.47 real_cost = 720.084 UNI-EID_bnmx_TS1-scwrl costs 3156.95 real_cost = 720.476 SPARKS2_TS5-scwrl costs 284.339 real_cost = 411.31 SPARKS2_TS4-scwrl costs 275.54 real_cost = 407.177 SPARKS2_TS3-scwrl costs 298.896 real_cost = 411.617 SPARKS2_TS2-scwrl costs 279.438 real_cost = 410.058 SPARKS2_TS1-scwrl costs 272.149 real_cost = 401.981 SP4_TS5-scwrl costs 294.481 real_cost = 411.017 SP4_TS4-scwrl costs 273.548 real_cost = 409.269 SP4_TS3-scwrl costs 294.458 real_cost = 411.272 SP4_TS2-scwrl costs 281.941 real_cost = 408.508 SP4_TS1-scwrl costs 272.675 real_cost = 398.973 SP3_TS5-scwrl costs 284.515 real_cost = 414.06 SP3_TS4-scwrl costs 302.254 real_cost = 406.442 SP3_TS3-scwrl costs 274.25 real_cost = 403.216 SP3_TS2-scwrl costs 287.778 real_cost = 413.159 SP3_TS1-scwrl costs 270.461 real_cost = 401.065 SAM_T06_server_TS5-scwrl costs 957.273 real_cost = 552.954 SAM_T06_server_TS4-scwrl costs 590.679 real_cost = 475.969 SAM_T06_server_TS3-scwrl costs 345.731 real_cost = 423.352 SAM_T06_server_TS2-scwrl costs 368.247 real_cost = 426.907 SAM_T06_server_TS1-scwrl costs 240.997 real_cost = 401.901 SAM-T99_AL5-scwrl costs 125940 real_cost = 626.333 SAM-T99_AL4-scwrl costs 95127.6 real_cost = 624.042 SAM-T99_AL3-scwrl costs 376826 real_cost = 614.733 SAM-T99_AL2-scwrl costs 384732 real_cost = 617.245 SAM-T99_AL1-scwrl costs 421797 real_cost = 616.933 SAM-T02_AL5-scwrl costs 122653 real_cost = 655.675 SAM-T02_AL4-scwrl costs 92931.8 real_cost = 624.161 SAM-T02_AL3-scwrl costs 214021 real_cost = 616.907 SAM-T02_AL2-scwrl costs 256326 real_cost = 622.89 SAM-T02_AL1-scwrl costs 303310 real_cost = 623.838 ROKKY_TS5-scwrl costs 394.318 real_cost = 439.677 ROKKY_TS4-scwrl costs 375.71 real_cost = 437.931 ROKKY_TS3-scwrl costs 339.992 real_cost = 436.961 ROKKY_TS2-scwrl costs 366.097 real_cost = 437.794 ROKKY_TS1-scwrl costs 362.978 real_cost = 427.149 RAPTOR_TS5-scwrl costs 278.194 real_cost = 407.819 RAPTOR_TS4-scwrl costs 271.103 real_cost = 407.931 RAPTOR_TS3-scwrl costs 279.193 real_cost = 405.422 RAPTOR_TS2-scwrl costs 280.814 real_cost = 406.122 RAPTOR_TS1-scwrl costs 271.103 real_cost = 407.931 RAPTORESS_TS5-scwrl costs 298.572 real_cost = 418.25 RAPTORESS_TS4-scwrl costs 276.151 real_cost = 409.068 RAPTORESS_TS3-scwrl costs 277.216 real_cost = 401.388 RAPTORESS_TS2-scwrl costs 279.317 real_cost = 402.98 RAPTORESS_TS1-scwrl costs 272.665 real_cost = 405.377 RAPTOR-ACE_TS5-scwrl costs 270.461 real_cost = 401.065 RAPTOR-ACE_TS4-scwrl costs 289.695 real_cost = 414.171 RAPTOR-ACE_TS3-scwrl costs 289.285 real_cost = 414.515 RAPTOR-ACE_TS2-scwrl costs 279.022 real_cost = 413.744 RAPTOR-ACE_TS1-scwrl costs 267.606 real_cost = 410.85 Pmodeller6_TS5-scwrl costs 378.974 real_cost = 422.69 Pmodeller6_TS4-scwrl costs 345.509 real_cost = 414.263 Pmodeller6_TS3-scwrl costs 385.976 real_cost = 430.658 Pmodeller6_TS2-scwrl costs 940.374 real_cost = 519.046 Pmodeller6_TS1-scwrl costs 361.892 real_cost = 428.259 Phyre-2_TS5-scwrl costs 376.802 real_cost = 428.019 Phyre-2_TS4-scwrl costs 378.404 real_cost = 427.951 Phyre-2_TS3-scwrl costs 361.631 real_cost = 416.653 Phyre-2_TS2-scwrl costs 377.846 real_cost = 427.916 Phyre-2_TS1-scwrl costs 376.48 real_cost = 427.844 Phyre-1_TS1-scwrl costs 660.823 real_cost = 491.268 Pcons6_TS5-scwrl costs 295.906 real_cost = 410.606 Pcons6_TS4-scwrl costs 341.913 real_cost = 413.354 Pcons6_TS3-scwrl costs 305.166 real_cost = 414.475 Pcons6_TS2-scwrl costs 336.579 real_cost = 413.902 Pcons6_TS1-scwrl costs 342.23 real_cost = 416.886 PROTINFO_TS5-scwrl costs 350.947 real_cost = 420.275 PROTINFO_TS4-scwrl costs 455.538 real_cost = 438.442 PROTINFO_TS3-scwrl costs 345.042 real_cost = 412.046 PROTINFO_TS2-scwrl costs 296.696 real_cost = 413.169 PROTINFO_TS1-scwrl costs 460.85 real_cost = 448.026 NN_PUT_lab_TS1-scwrl costs 375.719 real_cost = 432.461 MetaTasser_TS5-scwrl costs 516.47 real_cost = 415.153 MetaTasser_TS4-scwrl costs 579.729 real_cost = 437.014 MetaTasser_TS3-scwrl costs 578.215 real_cost = 432.187 MetaTasser_TS2-scwrl costs 758.252 real_cost = 447.385 MetaTasser_TS1-scwrl costs 607.398 real_cost = 426.051 Ma-OPUS-server_TS5-scwrl costs 338.496 real_cost = 394.868 Ma-OPUS-server_TS4-scwrl costs 280.011 real_cost = 407.939 Ma-OPUS-server_TS3-scwrl costs 284.055 real_cost = 411.311 Ma-OPUS-server_TS2-scwrl costs 287.615 real_cost = 409.598 Ma-OPUS-server_TS1-scwrl costs 283.086 real_cost = 403.859 LOOPP_TS5-scwrl costs 385.011 real_cost = 425.129 LOOPP_TS4-scwrl costs 393.382 real_cost = 430.091 LOOPP_TS3-scwrl costs 395.693 real_cost = 430.243 LOOPP_TS2-scwrl costs 453.852 real_cost = 441.813 LOOPP_TS1-scwrl costs 375.719 real_cost = 432.461 Huber-Torda-Server_TS5-scwrl costs 8629.04 real_cost = 612.1 Huber-Torda-Server_TS4-scwrl costs 29183.8 real_cost = 572.053 Huber-Torda-Server_TS3-scwrl costs 46384.3 real_cost = 597.363 Huber-Torda-Server_TS2-scwrl costs 35585.2 real_cost = 563.05 Huber-Torda-Server_TS1-scwrl costs 19268.3 real_cost = 573.148 HHpred3_TS1-scwrl costs 284.012 real_cost = 407.315 HHpred2_TS1-scwrl costs 284.012 real_cost = 407.315 HHpred1_TS1-scwrl costs 273.655 real_cost = 404.869 Frankenstein_TS3-scwrl costs 326.236 real_cost = 408.603 Frankenstein_TS2-scwrl costs 326.236 real_cost = 408.603 Frankenstein_TS1-scwrl costs 309.598 real_cost = 418.94 FUNCTION_TS5-scwrl costs 317.756 real_cost = 403.556 FUNCTION_TS4-scwrl costs 295.421 real_cost = 406.89 FUNCTION_TS3-scwrl costs 294.184 real_cost = 408.124 FUNCTION_TS2-scwrl costs 294.224 real_cost = 409.075 FUNCTION_TS1-scwrl costs 289.815 real_cost = 407.976 FUGUE_AL5-scwrl costs 71723.3 real_cost = 647.769 FUGUE_AL4-scwrl costs 187540 real_cost = 609.375 FUGUE_AL3-scwrl costs 50818.2 real_cost = 674.982 FUGUE_AL2-scwrl costs 256239 real_cost = 628.792 FUGUE_AL1-scwrl costs 178817 real_cost = 622.48 FUGMOD_TS5-scwrl costs 514.474 real_cost = 453.753 FUGMOD_TS4-scwrl costs 364.761 real_cost = 386.586 FUGMOD_TS3-scwrl costs 315.535 real_cost = 388.976 FUGMOD_TS2-scwrl costs 345.174 real_cost = 414.621 FUGMOD_TS1-scwrl costs 363.772 real_cost = 420.94 FPSOLVER-SERVER_TS1-scwrl costs 783.621 real_cost = 454.305 FORTE2_AL5-scwrl costs 95368.8 real_cost = 661.425 FORTE2_AL4-scwrl costs 122828 real_cost = 655.677 FORTE2_AL3-scwrl costs 195917 real_cost = 627.458 FORTE2_AL2-scwrl costs 72526.6 real_cost = 649.114 FORTE2_AL1-scwrl costs 302563 real_cost = 630.724 FORTE1_AL5-scwrl costs 109491 real_cost = 628.933 FORTE1_AL4-scwrl costs 195828 real_cost = 624.849 FORTE1_AL3-scwrl costs 123041 real_cost = 655.842 FORTE1_AL2-scwrl costs 71149.3 real_cost = 648.019 FORTE1_AL1-scwrl costs 303462 real_cost = 619.29 FOLDpro_TS5-scwrl costs 324.633 real_cost = 418.391 FOLDpro_TS4-scwrl costs 327.186 real_cost = 423.664 FOLDpro_TS3-scwrl costs 493.014 real_cost = 426.358 FOLDpro_TS2-scwrl costs 268.908 real_cost = 402.689 FOLDpro_TS1-scwrl costs 266.399 real_cost = 407.818 FAMS_TS5-scwrl costs 354.079 real_cost = 420.134 FAMS_TS4-scwrl costs 396.51 real_cost = 434.265 FAMS_TS3-scwrl costs 330.949 real_cost = 414.198 FAMS_TS2-scwrl costs 445.036 real_cost = 453.031 FAMS_TS1-scwrl costs 293.15 real_cost = 402.154 FAMSD_TS5-scwrl costs 354.079 real_cost = 420.134 FAMSD_TS4-scwrl costs 396.51 real_cost = 434.265 FAMSD_TS3-scwrl costs 330.949 real_cost = 414.198 FAMSD_TS2-scwrl costs 445.036 real_cost = 453.031 FAMSD_TS1-scwrl costs 354.003 real_cost = 414 Distill_TS5-scwrl costs 3163.74 real_cost = 719.829 Distill_TS4-scwrl costs 3161.53 real_cost = 721.558 Distill_TS3-scwrl costs 3162.33 real_cost = 719.974 Distill_TS2-scwrl costs 3160.37 real_cost = 719.073 Distill_TS1-scwrl costs 3163.8 real_cost = 717.685 CaspIta-FOX_TS5-scwrl costs 528.284 real_cost = 451.733 CaspIta-FOX_TS4-scwrl costs 403.675 real_cost = 439.759 CaspIta-FOX_TS3-scwrl costs 335.994 real_cost = 414.716 CaspIta-FOX_TS2-scwrl costs 317.474 real_cost = 408.595 CaspIta-FOX_TS1-scwrl costs 414.618 real_cost = 429.748 CIRCLE_TS5-scwrl costs 289.807 real_cost = 401.09 CIRCLE_TS4-scwrl costs 301.472 real_cost = 408.385 CIRCLE_TS3-scwrl costs 302.81 real_cost = 413.778 CIRCLE_TS2-scwrl costs 291.201 real_cost = 405.673 CIRCLE_TS1-scwrl costs 280.324 real_cost = 407.484 Bilab-ENABLE_TS5-scwrl costs 283.058 real_cost = 400.641 Bilab-ENABLE_TS4-scwrl costs 295.297 real_cost = 410.359 Bilab-ENABLE_TS3-scwrl costs 289.923 real_cost = 410.272 Bilab-ENABLE_TS2-scwrl costs 293.837 real_cost = 409.233 Bilab-ENABLE_TS1-scwrl costs 314.227 real_cost = 403.111 BayesHH_TS1-scwrl costs 271.296 real_cost = 405.846 ABIpro_TS5-scwrl costs 362.335 real_cost = 406.064 ABIpro_TS4-scwrl costs 367.793 real_cost = 413.515 ABIpro_TS3-scwrl costs 348.879 real_cost = 397.033 ABIpro_TS2-scwrl costs 387.041 real_cost = 386.345 ABIpro_TS1-scwrl costs 394.126 real_cost = 397.768 3Dpro_TS5-scwrl costs 317.693 real_cost = 418.98 3Dpro_TS4-scwrl costs 332.789 real_cost = 396.221 3Dpro_TS3-scwrl costs 341.252 real_cost = 400.159 3Dpro_TS2-scwrl costs 400.043 real_cost = 416.817 3Dpro_TS1-scwrl costs 265.935 real_cost = 403.884 3D-JIGSAW_TS5-scwrl costs 467.406 real_cost = 441.792 3D-JIGSAW_TS4-scwrl costs 472.612 real_cost = 440.328 3D-JIGSAW_TS3-scwrl costs 469.27 real_cost = 441.794 3D-JIGSAW_TS2-scwrl costs 468.991 real_cost = 436.608 3D-JIGSAW_TS1-scwrl costs 458.366 real_cost = 440.899 3D-JIGSAW_RECOM_TS5-scwrl costs 483.5 real_cost = 450.237 3D-JIGSAW_RECOM_TS4-scwrl costs 485.899 real_cost = 450.952 3D-JIGSAW_RECOM_TS3-scwrl costs 469.991 real_cost = 438.661 3D-JIGSAW_RECOM_TS2-scwrl costs 461.196 real_cost = 437.653 3D-JIGSAW_RECOM_TS1-scwrl costs 465.578 real_cost = 438.121 3D-JIGSAW_POPULUS_TS5-scwrl costs 397.198 real_cost = 441.559 3D-JIGSAW_POPULUS_TS4-scwrl costs 393.686 real_cost = 430.121 3D-JIGSAW_POPULUS_TS3-scwrl costs 391.536 real_cost = 431.524 3D-JIGSAW_POPULUS_TS2-scwrl costs 457.01 real_cost = 451 3D-JIGSAW_POPULUS_TS1-scwrl costs 457.119 real_cost = 449.1 dimer//try5-opt2.proto.dimerTake3 costs 260.519 real_cost = 399.159 dimer//try5-opt2.proto.dimerTake2 costs 258.63 real_cost = 399.154 dimer//try5-opt2.proto.dimerTake1 costs 251.497 real_cost = 398.698 dimer//rotate4 costs 261.403 real_cost = 399.657 dimer//rotate3 costs 263.848 real_cost = 399.597 dimer//rotate2 costs 260.77 real_cost = 399.626 dimer//rotate1 costs 258.705 real_cost = 399.527 dimer//dimer-1mumA-from-chimera-try3-1zlpA costs 270.363 real_cost = 405.186 dimer//try8-opt2.unpack costs 244.613 real_cost = 397.85 dimer//try8-opt2.repack-nonPC costs 247.403 real_cost = 399.817 dimer//try8-opt2 costs 244.613 real_cost = 397.85 dimer//try8-opt2.gromacs0 costs 260.172 real_cost = 398.327 dimer//try8-opt1 costs 246.871 real_cost = 397.544 dimer//try8-opt1-scwrl costs 252.308 real_cost = 399.17 dimer//try7-opt2.repack-nonPC costs 254.443 real_cost = 396.235 dimer//try7-opt2 costs 251.881 real_cost = 396.367 dimer//try7-opt2.gromacs0 costs 266.848 real_cost = 398.759 dimer//try7-opt1 costs 253.701 real_cost = 397.737 dimer//try7-opt1-scwrl costs 258.431 real_cost = 397.249 dimer//try6-opt2.unpack costs 249.944 real_cost = 398.299 dimer//try6-opt2.repack-nonPC costs 251.751 real_cost = 397.843 dimer//try6-opt2 costs 249.944 real_cost = 398.299 dimer//try6-opt2.gromacs0 costs 266.482 real_cost = 400.128 dimer//try6-opt1 costs 251.436 real_cost = 398.339 dimer//try6-opt1-scwrl costs 256.247 real_cost = 397.501 dimer//try5-opt2.unpack costs 248.434 real_cost = 398.577 dimer//try5-opt2.repack-nonPC costs 250.639 real_cost = 400.912 dimer//try5-opt2 costs 248.434 real_cost = 398.577 dimer//try5-opt2.gromacs0 costs 266.569 real_cost = 400.684 dimer//try5-opt1 costs 250.524 real_cost = 402.421 dimer//try5-opt1-scwrl costs 255.032 real_cost = 401.961 dimer//try4-opt2.repack-nonPC costs 252.701 real_cost = 402.564 dimer//try4-opt2 costs 251.102 real_cost = 402.385 dimer//try4-opt2.gromacs0 costs 267.869 real_cost = 401.941 dimer//try4-opt1 costs 253.186 real_cost = 403.874 dimer//try4-opt1-scwrl costs 257.058 real_cost = 403.686 dimer//try2-opt2.repack-nonPC costs 255.943 real_cost = 408.235 dimer//try2-opt2 costs 255.031 real_cost = 407.867 dimer//try2-opt2.gromacs0 costs 281.438 real_cost = 409.036 dimer//try2-opt1 costs 259.17 real_cost = 407.223 dimer//try2-opt1-scwrl costs 262.251 real_cost = 409.491 dimer//try1-opt2.repack-nonPC costs 252.874 real_cost = 397.174 dimer//try1-opt2 costs 251.109 real_cost = 396.834 dimer//try1-opt2.gromacs0 costs 258.795 real_cost = 398.305 dimer//try1-opt1 costs 252.871 real_cost = 396.286 dimer//try1-opt1-scwrl costs 256.705 real_cost = 396.019 robetta-model5.pdb.gz costs 250.39 real_cost = 403.756 robetta-model4.pdb.gz costs 257.409 real_cost = 401.027 robetta-model3.pdb.gz costs 274.933 real_cost = 413.398 robetta-model2.pdb.gz costs 271.677 real_cost = 401.634 robetta-model1.pdb.gz costs 272.671 real_cost = 406.748 chimera-try3-1zlpA.pdb.gz costs 270.386 real_cost = 405.153 T0284.try3-opt2.repack-nonPC.pdb.gz costs 239.189 real_cost = 399.141 T0284.try3-opt2.pdb.gz costs 238.166 real_cost = 398.66 T0284.try3-opt2.gromacs0.pdb.gz costs 244.081 real_cost = 399.563 T0284.try3-opt1.pdb.gz costs 246.804 real_cost = 400.834 T0284.try3-opt1-scwrl.pdb.gz costs 249.969 real_cost = 400.884 T0284.try2-opt2.repack-nonPC.pdb.gz costs 240.868 real_cost = 400.05 T0284.try2-opt2.pdb.gz costs 238.138 real_cost = 399.641 T0284.try2-opt2.gromacs0.pdb.gz costs 244.5 real_cost = 401.759 T0284.try2-opt1.pdb.gz costs 244.878 real_cost = 400.199 T0284.try2-opt1-scwrl.pdb.gz costs 245.973 real_cost = 400.104 T0284.try1-opt2.repack-nonPC.pdb.gz costs 242.122 real_cost = 404.474 T0284.try1-opt2.pdb.gz costs 240.247 real_cost = 404.074 T0284.try1-opt2.gromacs0.pdb.gz costs 245.795 real_cost = 404.895 T0284.try1-opt1.pdb.gz costs 245.945 real_cost = 404.633 T0284.try1-opt1-scwrl.pdb.gz costs 248.464 real_cost = 404.777 ../model5.ts-submitted costs 831.477 real_cost = 530.529 ../model4.ts-submitted costs 348.824 real_cost = 423.22 ../model3.ts-submitted costs 626.926 real_cost = 476.723 ../model2.ts-submitted costs 249.939 real_cost = 398.293 ../model1.ts-submitted costs 248.534 real_cost = 400.111 align5 costs 1830.09 real_cost = 538.762 align4 costs 2304.68 real_cost = 542.396 align3 costs 415.302 real_cost = 433.061 align2 costs 591.437 real_cost = 437.142 align1 costs 3689.33 real_cost = 462.992 T0284.try1-opt2.pdb costs 240.247 real_cost = 404.074 model5-scwrl costs 831.477 real_cost = 530.529 model4-scwrl costs 348.824 real_cost = 423.22 model3-scwrl costs 626.926 real_cost = 476.723 model2-scwrl costs 249.939 real_cost = 398.293 model1-scwrl costs 248.534 real_cost = 400.111 T0284 costs 528.878 real_cost = -885 # command:CPU_time= 724.772 sec, elapsed time= 780.815 sec) # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate.predburial.rdb > sort.tmp mv -f sort.tmp decoys/evaluate.predburial.rdb mv -f decoys/evaluate.predburial.pretty decoys/evaluate.predburial.pretty.old /projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate.predburial.rdb > decoys/evaluate.predburial.pretty