PFRMAT RR TARGET T0283 AUTHOR XXXX-XXXX-XXXX REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: logseploglen.5xt04_ent.5xnearNS_str2.miRpz_entR_pplR.n45.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz MODEL 1 MSFIEKMIGSLNDKREWKAMEARAKALPKEYHHAYKAIQKYMWTSGGPTD WQDTKRIFGGILDLFEEGAAEGKKVTDLTGEDVAAFCDELMKDTKTWMDK YRTKLNDSIGRD 4 42 0 8 0.633240574391 4 57 0 8 0.598495318932 7 20 0 8 0.616932799686 7 34 0 8 0.638676499293 7 38 0 8 0.636966198272 7 41 0 8 0.596588932443 7 42 0 8 0.653268526159 7 57 0 8 0.641231057188 7 61 0 8 0.652522312019 7 64 0 8 0.634749343126 7 65 0 8 0.629640227337 17 42 0 8 0.600766642262 20 34 0 8 0.645180000628 20 35 0 8 0.598843915318 20 38 0 8 0.635310365436 20 41 0 8 0.610636277455 20 42 0 8 0.661030242577 20 57 0 8 0.620603955381 20 61 0 8 0.651650821053 20 64 0 8 0.656160786803 20 65 0 8 0.599050894423 20 90 0 8 0.598675063943 23 34 0 8 0.676646271328 23 35 0 8 0.668040298036 23 37 0 8 0.651825119246 23 38 0 8 0.647952431265 23 41 0 8 0.663993311862 23 42 0 8 0.662489989945 23 43 0 8 0.637859476512 23 57 0 8 0.641133014454 23 58 0 8 0.602335326002 23 61 0 8 0.630974697879 23 64 0 8 0.648802134957 23 65 0 8 0.631666443833 24 33 0 8 0.624814346112 24 34 0 8 0.682763048547 24 35 0 8 0.64662885436 24 38 0 8 0.687725100236 24 41 0 8 0.673323712019 24 42 0 8 0.691178383189 24 43 0 8 0.626769753967 24 54 0 8 0.595788250118 24 57 0 8 0.680262958837 24 61 0 8 0.685214116889 24 62 0 8 0.62552787934 24 64 0 8 0.673367286567 24 65 0 8 0.667713488924 24 83 0 8 0.616976374234 24 86 0 8 0.634999896779 24 87 0 8 0.623207534643 24 90 0 8 0.642614549097 24 105 0 8 0.609732105577 27 38 0 8 0.697186224038 27 41 0 8 0.624629154281 27 42 0 8 0.700361719246 27 57 0 8 0.656798064572 27 61 0 8 0.66690735978 27 62 0 8 0.625299112962 27 64 0 8 0.664532546897 27 65 0 8 0.628300309976 27 83 0 8 0.604388776591 27 90 0 8 0.612776877141 27 105 0 8 0.604339755224 31 42 0 8 0.645125532443 31 64 0 8 0.595962548311 34 43 0 8 0.643219145954 34 57 0 8 0.660550922545 34 58 0 8 0.62627409348 34 61 0 8 0.659995347054 34 62 0 8 0.607580612255 34 64 0 8 0.659505133386 34 65 0 8 0.63373078806 34 86 0 8 0.596692421995 35 45 0 8 0.614127688138 35 57 0 8 0.647413196229 35 61 0 8 0.629607546426 35 62 0 8 0.609285466457 35 64 0 8 0.637603476041 35 65 0 8 0.630331973291 35 86 0 8 0.596550804713 35 90 0 8 0.613681049018 38 54 0 8 0.611055682482 38 57 0 8 0.721397332443 38 58 0 8 0.664734079183 38 61 0 8 0.747825295994 38 62 0 8 0.686042033307 38 64 0 8 0.705018749097 38 65 0 8 0.659537814297 38 83 0 8 0.672882519717 38 86 0 8 0.654134570306 38 90 0 8 0.639400926159 38 105 0 8 0.630026951453 41 51 0 8 0.602923582404 41 54 0 8 0.604917117989 41 57 0 8 0.667904127573 41 58 0 8 0.645926214768 41 61 0 8 0.646263917518 41 62 0 8 0.625255538413 41 64 0 8 0.660360283896 41 65 0 8 0.637924838335 41 86 0 8 0.631666443833 41 87 0 8 0.598217531186 41 90 0 8 0.623681407855 42 51 0 8 0.677648485939 42 52 0 8 0.620168209898 42 54 0 8 0.656378659544 42 55 0 8 0.67905921194 42 56 0 8 0.650724861901 42 57 0 8 0.69747490542 42 58 0 8 0.660485560723 42 59 0 8 0.645746469756 42 61 0 8 0.6949421348 42 62 0 8 0.666133911548 42 64 0 8 0.69229498099 42 65 0 8 0.692698045562 42 66 0 8 0.661640286253 42 68 0 8 0.662795011783 42 69 0 8 0.620418763551 42 70 0 8 0.605385544383 42 75 0 8 0.627564989474 42 83 0 8 0.639095904321 42 86 0 8 0.69922878099 42 87 0 8 0.638932499764 42 90 0 8 0.607798484996 42 91 0 8 0.606360524902 42 105 0 8 0.64055020487 43 55 0 8 0.613130920346 43 56 0 8 0.652658482482 43 57 0 8 0.644575403771 43 58 0 8 0.649107156795 43 61 0 8 0.631688231108 43 64 0 8 0.654831763079 43 65 0 8 0.654684698979 43 66 0 8 0.63313163802 43 67 0 8 0.607253803142 43 68 0 8 0.624721750196 43 86 0 8 0.666411699293 43 90 0 8 0.598751319403 54 64 0 8 0.64245114454 54 65 0 8 0.618376206599 55 64 0 8 0.634128405813 55 65 0 8 0.641241950825 57 66 0 8 0.681477599372 57 68 0 8 0.696952010841 57 69 0 8 0.641405355381 57 70 0 8 0.616235606913 57 75 0 8 0.646645194815 57 78 0 8 0.618768377533 57 83 0 8 0.668372553967 57 86 0 8 0.70329210762 57 87 0 8 0.638197179262 57 90 0 8 0.655049635821 58 68 0 8 0.699130738256 58 69 0 8 0.65441780487 58 70 0 8 0.654744613983 58 75 0 8 0.644155998743 58 83 0 8 0.640740843519 58 86 0 8 0.716805664415 58 87 0 8 0.631802614297 58 90 0 8 0.658176109662 58 91 0 8 0.603593541084 58 105 0 8 0.626747966693 61 70 0 8 0.659047600628 61 75 0 8 0.687812249332 61 78 0 8 0.650452520974 61 83 0 8 0.64711362121 61 86 0 8 0.712671529144 61 87 0 8 0.648834815868 61 90 0 8 0.668971704006 61 91 0 8 0.616110330086 61 105 0 8 0.635103386332 62 75 0 8 0.684849180047 62 78 0 8 0.636334367321 62 82 0 8 0.637962966064 62 83 0 8 0.697316947683 62 84 0 8 0.647102727573 62 86 0 8 0.721163119246 62 87 0 8 0.662680628594 62 88 0 8 0.628273075884 62 90 0 8 0.67507214077 62 91 0 8 0.685486457816 62 105 0 8 0.620070167164 64 75 0 8 0.661558583975 64 78 0 8 0.617744375648 64 82 0 8 0.614465390888 64 83 0 8 0.662027010369 64 84 0 8 0.626018093009 64 86 0 8 0.717557325373 64 87 0 8 0.657598746897 64 88 0 8 0.634890960408 64 89 0 8 0.62862167227 64 90 0 8 0.668067532129 64 91 0 8 0.655507168578 64 105 0 8 0.639466287981 65 75 0 8 0.694539070228 65 78 0 8 0.610423851532 65 82 0 8 0.642429357266 65 83 0 8 0.66243552176 65 84 0 8 0.642396676355 65 86 0 8 0.727160066457 65 87 0 8 0.651373033307 65 88 0 8 0.638769095208 65 90 0 8 0.649390391359 65 91 0 8 0.664701398272 65 101 0 8 0.598201190731 65 105 0 8 0.650643159623 68 86 0 8 0.662168627651 68 87 0 8 0.600635918617 68 90 0 8 0.603511838806 75 86 0 8 0.643872764179 78 87 0 8 0.598974638963 78 90 0 8 0.653017972506 78 105 0 8 0.621638850903 83 105 0 8 0.640670034878 86 101 0 8 0.627336223095 86 105 0 8 0.661155519403 87 100 0 8 0.608522911862 87 101 0 8 0.621824042734 87 105 0 8 0.664962845562 90 101 0 8 0.634171980361 90 105 0 8 0.679979724273 90 106 0 8 0.604666564336 91 101 0 8 0.597476763865 91 105 0 8 0.653856782561 END