# TARGET T0283 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0283.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 17 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.017 0.004 0.012 0.262 0.129 0.577 2 S 0.026 0.008 0.019 0.547 0.089 0.311 3 F 0.022 0.005 0.019 0.790 0.044 0.121 4 I 0.014 0.001 0.022 0.900 0.024 0.038 5 E 0.011 0.001 0.027 0.893 0.034 0.034 6 K 0.012 0.002 0.030 0.875 0.040 0.040 7 M 0.018 0.003 0.029 0.847 0.053 0.049 8 I 0.017 0.002 0.044 0.798 0.081 0.058 9 G 0.014 0.003 0.050 0.655 0.137 0.141 10 S 0.014 0.006 0.026 0.507 0.217 0.230 11 L 0.006 0.003 0.025 0.658 0.217 0.091 12 N 0.002 0.002 0.022 0.621 0.226 0.128 13 D 0.002 0.001 0.011 0.683 0.102 0.202 14 K 0.001 0.001 0.002 0.972 0.009 0.016 15 R 0.001 0.001 0.001 0.983 0.006 0.008 16 E 0.001 0.001 0.001 0.990 0.002 0.006 17 W 0.001 0.001 0.001 0.998 0.001 0.001 18 K 0.001 0.001 0.001 0.998 0.001 0.001 19 A 0.001 0.001 0.001 0.999 0.001 0.001 20 M 0.001 0.001 0.001 0.998 0.001 0.001 21 E 0.001 0.001 0.001 0.997 0.002 0.001 22 A 0.001 0.001 0.001 0.985 0.007 0.007 23 R 0.001 0.001 0.002 0.972 0.010 0.015 24 A 0.001 0.002 0.028 0.910 0.039 0.021 25 K 0.001 0.001 0.052 0.845 0.076 0.025 26 A 0.001 0.001 0.063 0.638 0.149 0.149 27 L 0.001 0.003 0.017 0.171 0.210 0.597 28 P 0.001 0.001 0.024 0.568 0.170 0.236 29 K 0.001 0.001 0.025 0.913 0.045 0.016 30 E 0.001 0.001 0.026 0.926 0.035 0.012 31 Y 0.001 0.001 0.013 0.950 0.023 0.012 32 H 0.001 0.001 0.003 0.963 0.011 0.022 33 H 0.001 0.001 0.004 0.971 0.013 0.011 34 A 0.001 0.001 0.004 0.975 0.011 0.009 35 Y 0.001 0.001 0.004 0.977 0.009 0.009 36 K 0.001 0.001 0.004 0.970 0.012 0.014 37 A 0.001 0.001 0.004 0.982 0.006 0.007 38 I 0.001 0.001 0.002 0.989 0.004 0.005 39 Q 0.001 0.001 0.004 0.985 0.006 0.004 40 K 0.002 0.001 0.003 0.983 0.007 0.005 41 Y 0.004 0.001 0.004 0.972 0.011 0.009 42 M 0.008 0.001 0.004 0.949 0.019 0.017 43 W 0.021 0.003 0.010 0.899 0.032 0.034 44 T 0.025 0.003 0.019 0.821 0.056 0.077 45 S 0.016 0.004 0.035 0.611 0.102 0.232 46 G 0.010 0.006 0.018 0.078 0.209 0.679 47 G 0.004 0.004 0.041 0.093 0.253 0.606 48 P 0.002 0.002 0.176 0.247 0.374 0.199 49 T 0.001 0.001 0.296 0.305 0.331 0.067 50 D 0.001 0.002 0.228 0.366 0.327 0.076 51 W 0.001 0.002 0.178 0.548 0.213 0.059 52 Q 0.001 0.004 0.100 0.666 0.154 0.074 53 D 0.002 0.008 0.072 0.700 0.101 0.117 54 T 0.001 0.003 0.015 0.950 0.013 0.018 55 K 0.001 0.001 0.007 0.971 0.010 0.011 56 R 0.001 0.001 0.007 0.983 0.004 0.006 57 I 0.001 0.001 0.007 0.990 0.002 0.001 58 F 0.001 0.001 0.002 0.996 0.001 0.001 59 G 0.001 0.001 0.001 0.997 0.001 0.001 60 G 0.001 0.001 0.001 0.995 0.002 0.003 61 I 0.001 0.001 0.001 0.996 0.001 0.002 62 L 0.001 0.001 0.001 0.997 0.001 0.001 63 D 0.001 0.001 0.001 0.997 0.001 0.001 64 L 0.001 0.001 0.001 0.995 0.002 0.002 65 F 0.001 0.001 0.001 0.990 0.003 0.005 66 E 0.001 0.001 0.001 0.988 0.004 0.006 67 E 0.001 0.001 0.001 0.983 0.009 0.006 68 G 0.001 0.001 0.004 0.972 0.014 0.010 69 A 0.001 0.001 0.009 0.948 0.027 0.014 70 A 0.001 0.001 0.021 0.931 0.036 0.011 71 E 0.001 0.001 0.018 0.866 0.061 0.054 72 G 0.004 0.001 0.006 0.122 0.214 0.652 73 K 0.046 0.007 0.004 0.078 0.180 0.686 74 K 0.117 0.046 0.006 0.133 0.158 0.541 75 V 0.046 0.006 0.105 0.725 0.072 0.046 76 T 0.036 0.002 0.264 0.636 0.042 0.021 77 D 0.024 0.002 0.265 0.661 0.036 0.013 78 L 0.017 0.002 0.145 0.747 0.053 0.036 79 T 0.031 0.009 0.040 0.586 0.118 0.215 80 G 0.018 0.003 0.055 0.399 0.189 0.336 81 E 0.016 0.009 0.071 0.428 0.181 0.295 82 D 0.018 0.037 0.060 0.449 0.119 0.318 83 V 0.001 0.001 0.005 0.984 0.006 0.005 84 A 0.001 0.001 0.001 0.996 0.002 0.001 85 A 0.001 0.001 0.001 0.997 0.001 0.001 86 F 0.001 0.001 0.001 0.999 0.001 0.001 87 C 0.001 0.001 0.001 0.999 0.001 0.001 88 D 0.001 0.001 0.001 0.998 0.001 0.001 89 E 0.001 0.001 0.001 0.996 0.003 0.001 90 L 0.001 0.001 0.001 0.991 0.005 0.003 91 M 0.001 0.001 0.006 0.960 0.025 0.009 92 K 0.001 0.001 0.008 0.907 0.052 0.032 93 D 0.002 0.001 0.009 0.756 0.105 0.128 94 T 0.002 0.004 0.005 0.655 0.096 0.238 95 K 0.002 0.004 0.016 0.405 0.208 0.365 96 T 0.002 0.002 0.032 0.553 0.199 0.212 97 W 0.006 0.006 0.053 0.488 0.228 0.219 98 M 0.011 0.007 0.035 0.631 0.149 0.167 99 D 0.015 0.002 0.026 0.773 0.085 0.098 100 K 0.010 0.002 0.021 0.887 0.042 0.038 101 Y 0.017 0.003 0.018 0.897 0.028 0.036 102 R 0.022 0.002 0.020 0.880 0.031 0.044 103 T 0.014 0.002 0.015 0.901 0.026 0.042 104 K 0.016 0.003 0.016 0.863 0.037 0.066 105 L 0.011 0.002 0.011 0.842 0.041 0.092 106 N 0.008 0.002 0.025 0.839 0.055 0.071 107 D 0.006 0.002 0.043 0.793 0.086 0.069 108 S 0.010 0.002 0.058 0.690 0.126 0.113 109 I 0.015 0.010 0.060 0.600 0.139 0.175 110 G 0.013 0.014 0.030 0.371 0.144 0.428 111 R 0.007 0.007 0.018 0.336 0.079 0.552 112 D 0.001 0.001 0.001 0.006 0.010 0.984