# TARGET T0283 # Using neural net dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t1c2-str2-from-empty.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0283.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 12.5344 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.010 0.489 0.001 0.033 0.308 0.001 0.001 0.007 0.080 0.055 0.006 0.009 2 S 0.001 0.007 0.337 0.001 0.032 0.460 0.001 0.001 0.004 0.085 0.063 0.003 0.005 3 F 0.001 0.006 0.137 0.001 0.020 0.733 0.001 0.001 0.002 0.027 0.067 0.003 0.003 4 I 0.001 0.002 0.099 0.001 0.008 0.861 0.001 0.001 0.004 0.008 0.010 0.001 0.006 5 E 0.001 0.001 0.015 0.001 0.005 0.966 0.001 0.001 0.001 0.004 0.006 0.001 0.001 6 K 0.001 0.001 0.009 0.001 0.007 0.958 0.001 0.001 0.003 0.003 0.017 0.001 0.001 7 M 0.001 0.001 0.014 0.001 0.012 0.945 0.001 0.001 0.004 0.003 0.017 0.001 0.001 8 I 0.001 0.002 0.014 0.001 0.025 0.902 0.001 0.001 0.001 0.008 0.043 0.001 0.001 9 G 0.001 0.003 0.033 0.001 0.038 0.744 0.001 0.002 0.002 0.023 0.148 0.004 0.003 10 S 0.001 0.006 0.083 0.001 0.032 0.723 0.001 0.001 0.004 0.031 0.115 0.001 0.004 11 L 0.001 0.009 0.136 0.002 0.044 0.626 0.001 0.001 0.003 0.070 0.107 0.001 0.001 12 N 0.001 0.003 0.136 0.001 0.057 0.610 0.001 0.001 0.001 0.081 0.110 0.001 0.001 13 D 0.001 0.002 0.158 0.001 0.022 0.715 0.001 0.001 0.001 0.046 0.056 0.001 0.001 14 K 0.001 0.001 0.020 0.001 0.007 0.938 0.001 0.001 0.001 0.006 0.027 0.001 0.001 15 R 0.001 0.001 0.010 0.001 0.009 0.965 0.001 0.001 0.001 0.003 0.011 0.001 0.001 16 E 0.001 0.001 0.004 0.001 0.005 0.982 0.001 0.001 0.001 0.002 0.006 0.001 0.001 17 W 0.001 0.001 0.009 0.001 0.001 0.983 0.001 0.001 0.001 0.001 0.003 0.001 0.001 18 K 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 19 A 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.005 0.001 0.001 20 M 0.001 0.001 0.004 0.001 0.001 0.985 0.001 0.001 0.001 0.001 0.009 0.001 0.001 21 E 0.001 0.001 0.001 0.001 0.003 0.991 0.001 0.001 0.001 0.001 0.005 0.001 0.001 22 A 0.001 0.001 0.001 0.001 0.006 0.981 0.001 0.001 0.001 0.001 0.012 0.001 0.001 23 R 0.001 0.001 0.002 0.001 0.010 0.959 0.001 0.001 0.001 0.001 0.028 0.001 0.001 24 A 0.001 0.001 0.020 0.001 0.033 0.896 0.001 0.001 0.001 0.004 0.045 0.001 0.001 25 K 0.001 0.006 0.074 0.001 0.051 0.619 0.001 0.001 0.001 0.054 0.190 0.004 0.001 26 A 0.001 0.003 0.052 0.001 0.039 0.218 0.001 0.001 0.001 0.053 0.632 0.001 0.002 27 L 0.001 0.015 0.455 0.001 0.009 0.095 0.001 0.001 0.002 0.340 0.083 0.001 0.001 28 P 0.001 0.004 0.786 0.001 0.017 0.135 0.001 0.001 0.001 0.034 0.023 0.001 0.001 29 K 0.001 0.001 0.015 0.001 0.073 0.773 0.001 0.001 0.001 0.022 0.117 0.001 0.001 30 E 0.001 0.001 0.030 0.001 0.045 0.845 0.001 0.001 0.001 0.023 0.056 0.001 0.001 31 Y 0.001 0.001 0.010 0.001 0.004 0.977 0.001 0.001 0.001 0.003 0.005 0.001 0.001 32 H 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.003 0.001 0.001 33 H 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 34 A 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 35 Y 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 36 K 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 37 A 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 38 I 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 Q 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 K 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 41 Y 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.004 0.001 0.001 42 M 0.001 0.001 0.001 0.001 0.001 0.991 0.001 0.001 0.001 0.001 0.007 0.001 0.001 43 W 0.001 0.001 0.003 0.001 0.006 0.944 0.001 0.001 0.001 0.003 0.043 0.001 0.001 44 T 0.001 0.001 0.010 0.001 0.011 0.808 0.001 0.001 0.001 0.007 0.162 0.001 0.001 45 S 0.001 0.009 0.073 0.001 0.014 0.418 0.001 0.001 0.002 0.063 0.416 0.001 0.002 46 G 0.001 0.006 0.369 0.001 0.008 0.071 0.001 0.001 0.002 0.214 0.328 0.001 0.001 47 G 0.001 0.009 0.394 0.001 0.007 0.022 0.001 0.001 0.001 0.444 0.119 0.002 0.001 48 P 0.001 0.021 0.496 0.001 0.025 0.028 0.001 0.001 0.002 0.256 0.157 0.001 0.012 49 T 0.001 0.008 0.444 0.001 0.019 0.032 0.001 0.001 0.001 0.436 0.054 0.006 0.001 50 D 0.001 0.011 0.623 0.001 0.036 0.082 0.001 0.001 0.001 0.197 0.044 0.001 0.005 51 W 0.001 0.008 0.048 0.001 0.155 0.697 0.001 0.001 0.001 0.016 0.075 0.001 0.001 52 Q 0.001 0.001 0.009 0.001 0.104 0.822 0.001 0.001 0.001 0.008 0.056 0.001 0.001 53 D 0.001 0.001 0.017 0.001 0.045 0.910 0.001 0.001 0.001 0.008 0.019 0.001 0.001 54 T 0.001 0.001 0.003 0.001 0.008 0.984 0.001 0.001 0.001 0.001 0.004 0.001 0.001 55 K 0.001 0.001 0.001 0.001 0.003 0.987 0.001 0.001 0.001 0.001 0.007 0.001 0.001 56 R 0.001 0.001 0.001 0.001 0.006 0.970 0.001 0.001 0.001 0.001 0.022 0.001 0.001 57 I 0.001 0.001 0.001 0.001 0.005 0.977 0.001 0.001 0.001 0.001 0.015 0.001 0.001 58 F 0.001 0.001 0.002 0.001 0.003 0.987 0.001 0.001 0.001 0.001 0.007 0.001 0.001 59 G 0.001 0.001 0.001 0.001 0.007 0.968 0.001 0.001 0.001 0.001 0.023 0.001 0.001 60 G 0.001 0.001 0.004 0.001 0.009 0.958 0.001 0.001 0.001 0.003 0.027 0.001 0.001 61 I 0.001 0.001 0.003 0.001 0.004 0.986 0.001 0.001 0.001 0.001 0.005 0.001 0.001 62 L 0.001 0.001 0.008 0.001 0.001 0.983 0.001 0.001 0.001 0.002 0.005 0.001 0.001 63 D 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.003 0.001 0.001 64 L 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 65 F 0.001 0.001 0.002 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.001 0.001 0.001 66 E 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 67 E 0.001 0.001 0.001 0.001 0.003 0.983 0.001 0.001 0.001 0.001 0.013 0.001 0.001 68 G 0.001 0.001 0.001 0.001 0.007 0.899 0.001 0.001 0.001 0.002 0.090 0.001 0.001 69 A 0.001 0.001 0.012 0.001 0.020 0.803 0.001 0.001 0.001 0.005 0.158 0.001 0.001 70 A 0.001 0.004 0.236 0.001 0.057 0.560 0.001 0.001 0.001 0.069 0.068 0.002 0.001 71 E 0.001 0.001 0.038 0.001 0.034 0.222 0.001 0.001 0.002 0.068 0.632 0.001 0.001 72 G 0.001 0.002 0.067 0.001 0.005 0.006 0.001 0.001 0.006 0.092 0.820 0.001 0.001 73 K 0.001 0.015 0.791 0.001 0.002 0.003 0.001 0.001 0.028 0.115 0.016 0.018 0.009 74 K 0.001 0.074 0.514 0.001 0.004 0.004 0.005 0.003 0.171 0.035 0.011 0.024 0.153 75 V 0.004 0.024 0.255 0.021 0.116 0.049 0.012 0.026 0.327 0.033 0.036 0.019 0.079 76 T 0.003 0.006 0.108 0.191 0.243 0.110 0.008 0.018 0.148 0.076 0.062 0.019 0.009 77 D 0.007 0.009 0.167 0.012 0.217 0.098 0.017 0.021 0.247 0.055 0.068 0.019 0.062 78 L 0.008 0.052 0.297 0.003 0.046 0.185 0.019 0.016 0.136 0.045 0.065 0.042 0.084 79 T 0.010 0.058 0.393 0.003 0.010 0.126 0.013 0.010 0.050 0.201 0.057 0.028 0.040 80 G 0.005 0.019 0.188 0.004 0.036 0.377 0.003 0.003 0.031 0.140 0.158 0.006 0.030 81 E 0.003 0.010 0.098 0.001 0.037 0.502 0.001 0.002 0.006 0.156 0.173 0.008 0.004 82 D 0.001 0.009 0.078 0.001 0.085 0.595 0.001 0.001 0.007 0.057 0.156 0.001 0.009 83 V 0.001 0.002 0.003 0.001 0.115 0.845 0.001 0.001 0.001 0.003 0.032 0.001 0.001 84 A 0.001 0.001 0.003 0.001 0.102 0.837 0.001 0.001 0.001 0.002 0.056 0.001 0.001 85 A 0.001 0.001 0.007 0.001 0.097 0.768 0.001 0.001 0.001 0.013 0.115 0.001 0.001 86 F 0.001 0.017 0.039 0.001 0.023 0.862 0.001 0.001 0.001 0.007 0.049 0.001 0.001 87 C 0.001 0.001 0.013 0.001 0.006 0.973 0.001 0.001 0.001 0.003 0.003 0.001 0.001 88 D 0.001 0.001 0.001 0.001 0.008 0.988 0.001 0.001 0.001 0.001 0.003 0.001 0.001 89 E 0.001 0.001 0.001 0.001 0.014 0.975 0.001 0.001 0.001 0.001 0.009 0.001 0.001 90 L 0.001 0.001 0.001 0.001 0.015 0.973 0.001 0.001 0.001 0.001 0.010 0.001 0.001 91 M 0.001 0.001 0.004 0.001 0.018 0.913 0.001 0.001 0.001 0.002 0.062 0.001 0.001 92 K 0.001 0.001 0.014 0.001 0.041 0.770 0.001 0.001 0.001 0.008 0.166 0.001 0.001 93 D 0.001 0.001 0.046 0.001 0.040 0.718 0.001 0.001 0.001 0.035 0.157 0.001 0.001 94 T 0.001 0.004 0.200 0.001 0.039 0.515 0.001 0.001 0.003 0.122 0.115 0.001 0.001 95 K 0.001 0.003 0.233 0.001 0.067 0.413 0.001 0.001 0.002 0.055 0.225 0.001 0.001 96 T 0.001 0.004 0.173 0.002 0.100 0.453 0.001 0.001 0.003 0.081 0.176 0.004 0.003 97 W 0.001 0.012 0.225 0.002 0.083 0.483 0.001 0.003 0.014 0.053 0.091 0.014 0.018 98 M 0.001 0.015 0.259 0.003 0.043 0.516 0.001 0.002 0.017 0.053 0.042 0.012 0.037 99 D 0.001 0.011 0.285 0.008 0.019 0.526 0.001 0.001 0.010 0.059 0.034 0.028 0.018 100 K 0.001 0.001 0.049 0.002 0.023 0.845 0.001 0.001 0.003 0.022 0.045 0.001 0.006 101 Y 0.001 0.003 0.040 0.002 0.017 0.859 0.001 0.001 0.002 0.029 0.039 0.005 0.002 102 R 0.001 0.002 0.071 0.001 0.022 0.836 0.001 0.001 0.005 0.011 0.035 0.002 0.013 103 T 0.001 0.012 0.059 0.001 0.027 0.823 0.001 0.003 0.003 0.015 0.039 0.009 0.006 104 K 0.001 0.009 0.088 0.001 0.031 0.720 0.001 0.007 0.010 0.027 0.068 0.008 0.030 105 L 0.003 0.011 0.108 0.005 0.045 0.572 0.001 0.003 0.005 0.062 0.168 0.009 0.009 106 N 0.003 0.008 0.185 0.007 0.059 0.290 0.001 0.002 0.005 0.081 0.334 0.009 0.017 107 D 0.001 0.013 0.259 0.006 0.114 0.250 0.001 0.002 0.005 0.115 0.205 0.009 0.022 108 S 0.003 0.020 0.168 0.002 0.153 0.227 0.002 0.004 0.014 0.088 0.275 0.022 0.022 109 I 0.005 0.023 0.263 0.003 0.103 0.157 0.003 0.006 0.031 0.143 0.216 0.011 0.037 110 G 0.006 0.044 0.403 0.003 0.048 0.074 0.005 0.006 0.039 0.136 0.161 0.040 0.034 111 R 0.003 0.081 0.538 0.001 0.011 0.031 0.002 0.001 0.017 0.183 0.093 0.011 0.029 112 D 0.001 0.010 0.801 0.001 0.004 0.008 0.001 0.001 0.002 0.148 0.020 0.002 0.005