# TARGET T0283 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0283.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 12.5344 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.607 0.120 0.140 0.062 0.020 0.021 0.013 0.004 0.010 0.003 0.001 2 S 0.817 0.040 0.076 0.024 0.018 0.004 0.007 0.006 0.002 0.005 0.001 3 F 0.932 0.012 0.012 0.025 0.003 0.007 0.003 0.001 0.003 0.001 0.001 4 I 0.988 0.003 0.003 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 5 E 0.995 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 6 K 0.990 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 7 M 0.968 0.002 0.003 0.025 0.001 0.001 0.001 0.001 0.001 0.001 0.001 8 I 0.920 0.009 0.015 0.049 0.001 0.002 0.001 0.001 0.002 0.001 0.001 9 G 0.808 0.004 0.020 0.039 0.012 0.001 0.018 0.076 0.001 0.022 0.001 10 S 0.743 0.014 0.057 0.155 0.007 0.011 0.004 0.001 0.004 0.003 0.001 11 L 0.781 0.016 0.032 0.151 0.003 0.007 0.004 0.001 0.005 0.001 0.001 12 N 0.799 0.004 0.033 0.086 0.004 0.005 0.051 0.007 0.002 0.008 0.001 13 D 0.538 0.012 0.047 0.293 0.014 0.024 0.039 0.019 0.010 0.003 0.001 14 K 0.813 0.024 0.064 0.081 0.003 0.009 0.002 0.001 0.002 0.001 0.001 15 R 0.870 0.021 0.047 0.026 0.005 0.007 0.012 0.005 0.004 0.002 0.001 16 E 0.923 0.010 0.032 0.021 0.002 0.006 0.001 0.001 0.002 0.002 0.001 17 W 0.984 0.001 0.003 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 18 K 0.993 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 19 A 0.986 0.001 0.001 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 20 M 0.986 0.001 0.001 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 21 E 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 22 A 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 23 R 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 24 A 0.990 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 25 K 0.990 0.001 0.002 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 26 A 0.396 0.001 0.006 0.593 0.001 0.001 0.001 0.001 0.001 0.001 0.001 27 L 0.039 0.034 0.802 0.013 0.004 0.018 0.007 0.001 0.081 0.001 0.001 28 P 0.098 0.003 0.869 0.002 0.001 0.023 0.001 0.001 0.002 0.001 0.002 29 K 0.994 0.001 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 30 E 0.989 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 31 Y 0.973 0.001 0.001 0.025 0.001 0.001 0.001 0.001 0.001 0.001 0.001 32 H 0.995 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 33 H 0.995 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 34 A 0.989 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 35 Y 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 36 K 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 37 A 0.994 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 38 I 0.990 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 Q 0.995 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 K 0.987 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 41 Y 0.864 0.003 0.004 0.123 0.001 0.001 0.002 0.001 0.002 0.001 0.001 42 M 0.817 0.021 0.028 0.112 0.002 0.007 0.003 0.001 0.008 0.001 0.001 43 W 0.659 0.060 0.103 0.107 0.019 0.022 0.014 0.003 0.006 0.006 0.001 44 T 0.490 0.070 0.124 0.251 0.022 0.021 0.007 0.002 0.011 0.002 0.001 45 S 0.285 0.107 0.166 0.323 0.057 0.018 0.015 0.007 0.018 0.004 0.001 46 G 0.108 0.031 0.152 0.075 0.184 0.005 0.038 0.190 0.007 0.210 0.001 47 G 0.091 0.043 0.388 0.015 0.152 0.010 0.012 0.030 0.012 0.242 0.004 48 P 0.405 0.021 0.388 0.097 0.009 0.035 0.003 0.003 0.004 0.004 0.030 49 T 0.508 0.047 0.092 0.232 0.057 0.008 0.023 0.017 0.005 0.011 0.001 50 D 0.240 0.041 0.120 0.239 0.055 0.109 0.105 0.024 0.057 0.009 0.001 51 W 0.592 0.037 0.067 0.250 0.005 0.030 0.006 0.002 0.010 0.001 0.001 52 Q 0.884 0.013 0.043 0.047 0.003 0.003 0.003 0.001 0.001 0.001 0.001 53 D 0.556 0.005 0.027 0.325 0.003 0.027 0.033 0.010 0.014 0.001 0.001 54 T 0.840 0.008 0.031 0.098 0.001 0.013 0.004 0.001 0.004 0.001 0.001 55 K 0.958 0.004 0.011 0.022 0.001 0.001 0.001 0.001 0.001 0.001 0.001 56 R 0.966 0.002 0.005 0.017 0.001 0.003 0.004 0.001 0.001 0.001 0.001 57 I 0.959 0.003 0.004 0.031 0.001 0.001 0.001 0.001 0.001 0.001 0.001 58 F 0.949 0.003 0.005 0.040 0.001 0.001 0.001 0.001 0.001 0.001 0.001 59 G 0.971 0.001 0.004 0.009 0.001 0.001 0.006 0.005 0.001 0.003 0.001 60 G 0.975 0.001 0.001 0.015 0.001 0.001 0.004 0.005 0.001 0.001 0.001 61 I 0.991 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 62 L 0.996 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 63 D 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 64 L 0.989 0.001 0.001 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 65 F 0.992 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 66 E 0.995 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 67 E 0.954 0.001 0.001 0.044 0.001 0.001 0.001 0.001 0.001 0.001 0.001 68 G 0.962 0.002 0.008 0.019 0.001 0.001 0.003 0.003 0.001 0.001 0.001 69 A 0.960 0.006 0.009 0.019 0.002 0.002 0.001 0.001 0.001 0.001 0.001 70 A 0.898 0.013 0.017 0.063 0.003 0.002 0.002 0.001 0.001 0.001 0.001 71 E 0.386 0.010 0.154 0.434 0.003 0.002 0.009 0.001 0.001 0.001 0.001 72 G 0.004 0.001 0.001 0.016 0.001 0.001 0.233 0.741 0.001 0.002 0.001 73 K 0.002 0.207 0.756 0.002 0.007 0.017 0.001 0.001 0.007 0.001 0.001 74 K 0.003 0.149 0.760 0.002 0.004 0.073 0.001 0.001 0.007 0.001 0.001 75 V 0.337 0.295 0.253 0.011 0.011 0.077 0.001 0.001 0.014 0.001 0.001 76 T 0.925 0.006 0.001 0.066 0.001 0.001 0.001 0.001 0.001 0.001 0.001 77 D 0.314 0.182 0.092 0.180 0.158 0.030 0.021 0.001 0.021 0.001 0.001 78 L 0.426 0.222 0.194 0.074 0.013 0.035 0.005 0.001 0.030 0.001 0.001 79 T 0.188 0.256 0.243 0.220 0.028 0.030 0.004 0.001 0.027 0.002 0.001 80 G 0.163 0.028 0.170 0.014 0.142 0.006 0.014 0.058 0.005 0.398 0.001 81 E 0.966 0.002 0.010 0.017 0.001 0.002 0.001 0.001 0.001 0.001 0.001 82 D 0.929 0.003 0.012 0.031 0.001 0.014 0.003 0.001 0.005 0.001 0.001 83 V 0.993 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 84 A 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 85 A 0.980 0.001 0.001 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 86 F 0.958 0.001 0.003 0.033 0.001 0.001 0.001 0.001 0.002 0.001 0.001 87 C 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 88 D 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 89 E 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 90 L 0.972 0.001 0.001 0.028 0.001 0.001 0.001 0.001 0.001 0.001 0.001 91 M 0.946 0.003 0.017 0.027 0.001 0.004 0.001 0.001 0.002 0.001 0.001 92 K 0.891 0.003 0.015 0.082 0.001 0.002 0.003 0.001 0.001 0.001 0.001 93 D 0.663 0.016 0.061 0.195 0.005 0.015 0.029 0.004 0.010 0.001 0.001 94 T 0.423 0.060 0.114 0.346 0.010 0.017 0.012 0.006 0.011 0.001 0.001 95 K 0.545 0.034 0.117 0.102 0.022 0.039 0.087 0.028 0.012 0.015 0.001 96 T 0.542 0.112 0.117 0.160 0.032 0.015 0.006 0.005 0.008 0.003 0.001 97 W 0.579 0.055 0.087 0.176 0.020 0.032 0.025 0.006 0.017 0.003 0.001 98 M 0.567 0.114 0.139 0.106 0.021 0.023 0.009 0.002 0.016 0.004 0.001 99 D 0.636 0.057 0.129 0.078 0.015 0.043 0.025 0.004 0.010 0.002 0.001 100 K 0.857 0.033 0.041 0.046 0.008 0.003 0.005 0.002 0.002 0.001 0.001 101 Y 0.765 0.042 0.062 0.096 0.007 0.009 0.009 0.003 0.005 0.001 0.001 102 R 0.735 0.079 0.083 0.042 0.009 0.023 0.015 0.001 0.012 0.001 0.001 103 T 0.730 0.137 0.065 0.036 0.013 0.009 0.003 0.001 0.006 0.001 0.001 104 K 0.601 0.122 0.170 0.047 0.013 0.020 0.007 0.001 0.018 0.001 0.001 105 L 0.606 0.098 0.144 0.108 0.007 0.016 0.005 0.001 0.013 0.001 0.001 106 N 0.386 0.071 0.078 0.166 0.026 0.064 0.150 0.016 0.035 0.008 0.001 107 D 0.385 0.101 0.132 0.209 0.046 0.034 0.057 0.010 0.021 0.006 0.001 108 S 0.452 0.150 0.202 0.106 0.037 0.023 0.010 0.004 0.011 0.002 0.001 109 I 0.353 0.257 0.122 0.216 0.024 0.011 0.003 0.001 0.013 0.001 0.001 110 G 0.157 0.122 0.207 0.079 0.187 0.023 0.047 0.082 0.015 0.080 0.001 111 R 0.176 0.385 0.221 0.085 0.050 0.029 0.008 0.002 0.040 0.004 0.001 112 D 0.182 0.121 0.320 0.113 0.044 0.086 0.073 0.009 0.040 0.010 0.002