# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1am4A 199 5.97e-01 1tx4A a.116.1.1 19100 1sheA 103 8.85e-01 d.274.1.1 105551 1exzA 141 1.23e+00 1exzA a.26.1.2 16877 1tx4A 198 1.90e+00 1tx4A a.116.1.1 19098 1tffA 234 2.16e+00 d.3.1.11 106854 1grj 158 2.26e+00 1grj a.2.1.1,d.26.1.2 15691,38433 1dlc 584 2.56e+00 1ciy b.18.1.3,b.77.2.1,f.1.3.1 23719,27976,43391 1ji6A 589 2.58e+00 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 2bh9A 489 4.11e+00 1hhsA 664 5.00e+00 1hi0P e.8.1.6 61045 1t9iA 163 6.11e+00 1uvjA 664 6.58e+00 e.8.1.6 100045 1ldtL 46 6.70e+00 1tgsI g.68.1.1 44722 1hi0P 664 6.91e+00 1hi0P e.8.1.6 61051 1or4A 178 6.99e+00 a.1.1.2 93447 1p68A 102 7.27e+00 k.8.1.1 94158 1jli 112 8.74e+00 1jli a.26.1.2 16884 2b3nA 159 9.13e+00 1scfA 273 9.76e+00 1exzA a.26.1.2 16873 1bp7A 152 1.05e+01 1bp7A d.95.2.1 40568 1yz7A 188 1.06e+01 1rkeA 262 1.06e+01 a.24.9.1,a.24.9.1 97608,97609 1g9zA 152 1.14e+01 1bp7A d.95.2.1 60408 1z00B 84 1.17e+01 2fm9A 215 1.36e+01 1qy5A 269 1.37e+01 d.122.1.1 96573 1nnwA 252 1.60e+01 d.159.1.5 80674 1gnc 178 1.64e+01 1bgc a.26.1.1 16821 1g03A 134 1.77e+01 1qrjB a.73.1.1 60162 1htmB 138 1.81e+01 1htmB h.3.1.1 45677 1ovoA 56 1.86e+01 2ovo g.68.1.1 44697 1brsD 89 1.98e+01 1ay7B c.9.1.1 30825 1j1jA 240 2.00e+01 a.118.16.1 90762 1csn 298 2.04e+01 1csn d.144.1.7 41664 1qj2B 809 2.06e+01 1qj2B 1dcs 311 2.07e+01 1dcs b.82.2.1 28124 1gvhA 396 2.09e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1b27D 90 2.10e+01 1ay7B c.9.1.1 30840 1ae9A 179 2.11e+01 1ae9A d.163.1.1 42153 1ab7 89 2.18e+01 1ay7B c.9.1.1 30835 1zxiB 809 2.26e+01 1kn0A 212 2.28e+01 d.50.1.3 77444 1qu1A 155 2.73e+01 1qu1A h.3.1.1 45670 1y13A 181 2.76e+01 1lw7A 365 2.77e+01 c.26.1.3,c.37.1.1 74295,74296 1orjA 130 2.78e+01 a.24.19.1 93456 2fvhA 120 2.86e+01 1hlb 158 3.05e+01 1hlb a.1.1.2 15625 1vpmA 169 3.05e+01 1sgpI 51 3.31e+01 2ovo g.68.1.1 44678 1dktB 79 3.37e+01 1puc d.97.1.1 40688 1b2uD 90 3.41e+01 1ay7B c.9.1.1 30843 2essA 248 3.49e+01 1a19A 90 3.62e+01 1ay7B c.9.1.1 30831 1vpqA 273 3.65e+01 1tc6A 236 3.69e+01 d.122.1.1 106756 1a4rA 191 3.73e+01 1ctqA c.37.1.8 32063 2etdA 171 3.74e+01 1pkp 150 3.87e+01 1pkp d.14.1.1,d.50.1.2 37551,38787 1idrA 136 3.88e+01 1dlyA a.1.1.1 62301 2ghjA 118 3.97e+01 1x9zA 188 4.00e+01 1u46A 291 4.06e+01 d.144.1.7 107656 1zgmA 248 4.07e+01 1lniA 96 4.08e+01 d.1.1.2 74046 1b3sD 90 4.13e+01 1ay7B c.9.1.1 30846 1nfn 191 4.18e+01 1nfn a.24.1.1 16523 1pylA 97 4.25e+01 d.1.1.2 104391 1buhB 79 4.28e+01 1puc d.97.1.1 40686 2anuA 255 4.33e+01 1eumA 165 4.48e+01 1eumA a.25.1.1 59507 1xhkA 187 4.49e+01 2djkA 133 4.55e+01 1r0rI 51 4.63e+01 g.68.1.1 96736 1ay7B 89 4.64e+01 1ay7B c.9.1.1 30836 1v52A 133 4.69e+01 1ydgA 211 4.80e+01 1nf3A 195 4.89e+01 c.37.1.8 85594 1kshA 186 4.96e+01 c.37.1.8 72914 1iarB 207 4.97e+01 1iarB b.1.2.1,b.1.2.1 22037,22038 1humA 69 4.98e+01 1b3aA d.9.1.1 37397 1nf3C 128 5.13e+01 b.36.1.1 85596 2cwyA 94 5.27e+01 1i6wA 181 5.30e+01 1i6wA c.69.1.18 61859 1q0sA 259 5.50e+01 c.66.1.28 95509 1ihcA 188 5.51e+01 1di6A c.57.1.1 62379 1bwsA 321 5.51e+01 1bsvA c.2.1.2 29812 1i8vA 96 5.53e+01 d.1.1.2 61985 2f4mA 295 5.57e+01 1qc7A 101 5.62e+01 1qc7A a.118.14.1 18456 2fnoA 248 5.62e+01 1b2sD 90 5.68e+01 1ay7B c.9.1.1 30837 1q5dA 419 5.68e+01 a.104.1.1 95891 1q1aA 289 5.68e+01 c.31.1.5 95561 2spl 154 5.76e+01 1a6m a.1.1.2 15047 2astC 69 5.83e+01 1rgeA 96 5.84e+01 1rgeA d.1.1.2 36028 2bb8 71 5.90e+01 2bb8 d.10.1.1 37480 2g39A 497 6.04e+01 1ycyA 71 6.08e+01 1t46A 313 6.17e+01 d.144.1.7 106397 1cd9C 175 6.36e+01 1bgc a.26.1.1 16816 1w9cA 321 6.39e+01 1ki1B 352 6.43e+01 a.87.1.1,b.55.1.1 72497,72498 1jsmB 176 6.48e+01 h.3.1.1 63265 1t9hA 307 6.53e+01 1zljA 78 6.55e+01 1snc 149 6.60e+01 1snc b.40.1.1 24813 1ey4A 149 6.73e+01 1snc b.40.1.1 24815 1gqyA 475 6.74e+01 c.5.1.1,c.59.1.1,c.72.2.1 83305,83306,83307 3sgbI 56 6.75e+01 2ovo g.68.1.1 44679 1a6m 151 6.82e+01 1a6m a.1.1.2 15018 1ispA 181 6.86e+01 c.69.1.18 76778 2bxkA 585 6.89e+01 1jljA 189 7.01e+01 c.57.1.1 63169 2sns 149 7.02e+01 1snc b.40.1.1 24860 1n62B 809 7.02e+01 d.41.1.1,d.133.1.1 80092,80093 1bj5 585 7.08e+01 1bj5 a.126.1.1,a.126.1.1,a.126.1.1 19369,19370,19371 2ovo 56 7.15e+01 2ovo g.68.1.1 44701 1q44A 326 7.29e+01 c.37.1.5 95779 2bwqA 129 7.45e+01 1scmB 145 7.46e+01 1wdcB a.39.1.5 17304 1urvA 190 7.47e+01 1ut0A 190 7.47e+01 a.1.1.2 108012 1k04A 162 7.51e+01 a.24.14.1 67904 1gmpA 96 7.56e+01 1rgeA d.1.1.2 36036 1itf 165 7.57e+01 1b5l a.26.1.3 16899 1rgs 288 7.87e+01 1rgs b.82.3.2,b.82.3.2 28146,28147 1wdcB 156 7.89e+01 1wdcB a.39.1.5 17302 1puc 105 7.92e+01 1puc d.97.1.1 40675 2d2yA 145 7.96e+01 1br1B 150 8.00e+01 1wdcC a.39.1.5 17309 1an0A 190 8.04e+01 1ctqA c.37.1.8 32066 1h0oA 390 8.16e+01 a.25.1.2 70845 1fiuA 286 8.20e+01 1fiuA c.52.1.10 33317 2spo 154 8.22e+01 1a6m a.1.1.2 15053 1qk3A 233 8.23e+01 1qk3A c.61.1.1 34031 1wf3A 301 8.32e+01 1kk8B 139 8.38e+01 a.39.1.5 77430 1bsvA 321 8.54e+01 1bsvA c.2.1.2 29809 1wqwA 235 8.61e+01 1a6g 151 8.79e+01 1a6m a.1.1.2 15021 1qbqA 333 8.87e+01 1ft1A a.118.6.1 19187 1b68A 191 8.89e+01 1nfn a.24.1.1 59076 2f5uA 447 8.99e+01