# TARGET T0283 # Using neural net dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t1c2-str2-from-empty.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0283.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 7.00874 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.005 0.541 0.001 0.036 0.290 0.001 0.001 0.002 0.077 0.043 0.002 0.002 2 S 0.001 0.008 0.386 0.001 0.033 0.403 0.001 0.001 0.002 0.077 0.087 0.001 0.003 3 F 0.001 0.011 0.118 0.001 0.025 0.699 0.001 0.001 0.002 0.025 0.116 0.002 0.001 4 I 0.001 0.002 0.126 0.001 0.012 0.831 0.001 0.001 0.003 0.011 0.011 0.001 0.003 5 E 0.001 0.001 0.013 0.001 0.006 0.964 0.001 0.001 0.001 0.005 0.009 0.001 0.001 6 K 0.001 0.001 0.007 0.001 0.009 0.952 0.001 0.001 0.003 0.003 0.023 0.001 0.001 7 M 0.001 0.001 0.014 0.001 0.010 0.954 0.001 0.001 0.008 0.002 0.009 0.001 0.001 8 I 0.001 0.001 0.006 0.003 0.015 0.947 0.001 0.001 0.001 0.006 0.020 0.001 0.001 9 G 0.001 0.001 0.019 0.001 0.025 0.822 0.001 0.002 0.002 0.015 0.111 0.002 0.001 10 S 0.001 0.003 0.043 0.001 0.022 0.832 0.001 0.001 0.004 0.016 0.075 0.001 0.004 11 L 0.001 0.008 0.061 0.004 0.030 0.759 0.001 0.001 0.001 0.045 0.091 0.001 0.001 12 N 0.001 0.002 0.101 0.001 0.047 0.680 0.001 0.001 0.001 0.058 0.110 0.001 0.001 13 D 0.001 0.002 0.136 0.001 0.018 0.751 0.001 0.001 0.001 0.041 0.050 0.001 0.001 14 K 0.001 0.001 0.019 0.001 0.006 0.941 0.001 0.001 0.001 0.007 0.026 0.001 0.001 15 R 0.001 0.001 0.011 0.001 0.009 0.963 0.001 0.001 0.001 0.004 0.013 0.001 0.001 16 E 0.001 0.001 0.005 0.001 0.005 0.979 0.001 0.001 0.001 0.002 0.008 0.001 0.001 17 W 0.001 0.001 0.010 0.001 0.002 0.981 0.001 0.001 0.001 0.001 0.004 0.001 0.001 18 K 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.003 0.001 0.001 19 A 0.001 0.001 0.001 0.001 0.001 0.990 0.001 0.001 0.001 0.001 0.006 0.001 0.001 20 M 0.001 0.001 0.006 0.001 0.002 0.976 0.001 0.001 0.001 0.002 0.013 0.001 0.001 21 E 0.001 0.001 0.002 0.001 0.004 0.986 0.001 0.001 0.001 0.001 0.007 0.001 0.001 22 A 0.001 0.001 0.001 0.001 0.008 0.974 0.001 0.001 0.001 0.001 0.014 0.001 0.001 23 R 0.001 0.001 0.003 0.001 0.013 0.950 0.001 0.001 0.001 0.002 0.033 0.001 0.001 24 A 0.001 0.001 0.023 0.001 0.039 0.884 0.001 0.001 0.001 0.004 0.046 0.001 0.001 25 K 0.001 0.007 0.076 0.001 0.053 0.612 0.001 0.001 0.002 0.055 0.187 0.006 0.001 26 A 0.001 0.004 0.061 0.001 0.043 0.229 0.001 0.001 0.001 0.058 0.600 0.001 0.002 27 L 0.001 0.014 0.452 0.001 0.010 0.096 0.001 0.001 0.002 0.348 0.077 0.001 0.001 28 P 0.001 0.004 0.815 0.001 0.015 0.116 0.001 0.001 0.001 0.030 0.019 0.001 0.001 29 K 0.001 0.001 0.016 0.001 0.084 0.771 0.001 0.001 0.001 0.018 0.110 0.001 0.001 30 E 0.001 0.001 0.030 0.001 0.066 0.811 0.001 0.001 0.001 0.026 0.065 0.001 0.001 31 Y 0.001 0.001 0.017 0.001 0.007 0.962 0.001 0.001 0.001 0.004 0.008 0.001 0.001 32 H 0.001 0.001 0.002 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.003 0.001 0.001 33 H 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 34 A 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 35 Y 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 36 K 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 37 A 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 38 I 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 Q 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 K 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.006 0.001 0.001 41 Y 0.001 0.001 0.001 0.001 0.001 0.982 0.001 0.001 0.001 0.001 0.017 0.001 0.001 42 M 0.001 0.001 0.004 0.001 0.003 0.970 0.001 0.001 0.001 0.003 0.019 0.001 0.001 43 W 0.001 0.002 0.012 0.001 0.024 0.903 0.001 0.001 0.001 0.011 0.048 0.001 0.001 44 T 0.001 0.001 0.022 0.001 0.041 0.757 0.001 0.001 0.001 0.012 0.162 0.001 0.002 45 S 0.001 0.011 0.092 0.001 0.047 0.566 0.001 0.001 0.005 0.051 0.219 0.001 0.005 46 G 0.001 0.010 0.190 0.004 0.034 0.212 0.001 0.001 0.005 0.182 0.360 0.001 0.001 47 G 0.001 0.006 0.328 0.002 0.023 0.043 0.001 0.001 0.005 0.379 0.207 0.005 0.001 48 P 0.001 0.022 0.461 0.001 0.040 0.038 0.001 0.001 0.009 0.260 0.133 0.002 0.034 49 T 0.001 0.056 0.443 0.001 0.022 0.029 0.001 0.001 0.011 0.283 0.102 0.044 0.006 50 D 0.001 0.042 0.473 0.001 0.067 0.073 0.001 0.001 0.008 0.213 0.098 0.001 0.025 51 W 0.001 0.004 0.034 0.001 0.306 0.562 0.001 0.001 0.001 0.020 0.072 0.001 0.001 52 Q 0.001 0.001 0.014 0.001 0.276 0.625 0.001 0.001 0.001 0.018 0.067 0.001 0.001 53 D 0.001 0.002 0.033 0.001 0.117 0.801 0.001 0.001 0.001 0.015 0.030 0.001 0.001 54 T 0.001 0.001 0.003 0.001 0.019 0.966 0.001 0.001 0.001 0.001 0.008 0.001 0.001 55 K 0.001 0.001 0.003 0.001 0.008 0.963 0.001 0.001 0.001 0.001 0.023 0.001 0.001 56 R 0.001 0.001 0.005 0.001 0.024 0.912 0.001 0.001 0.001 0.003 0.055 0.001 0.001 57 I 0.001 0.003 0.006 0.001 0.021 0.927 0.001 0.001 0.001 0.003 0.037 0.001 0.001 58 F 0.001 0.001 0.011 0.001 0.017 0.940 0.001 0.001 0.001 0.007 0.022 0.001 0.001 59 G 0.001 0.001 0.012 0.001 0.032 0.863 0.001 0.001 0.001 0.010 0.082 0.001 0.001 60 G 0.001 0.002 0.019 0.001 0.039 0.858 0.001 0.001 0.001 0.014 0.066 0.001 0.001 61 I 0.001 0.002 0.015 0.001 0.016 0.952 0.001 0.001 0.001 0.002 0.012 0.001 0.001 62 L 0.001 0.003 0.034 0.001 0.004 0.938 0.001 0.001 0.001 0.007 0.012 0.001 0.001 63 D 0.001 0.001 0.008 0.001 0.003 0.981 0.001 0.001 0.001 0.003 0.005 0.001 0.001 64 L 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.002 0.001 0.001 65 F 0.001 0.001 0.004 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.002 0.001 0.001 66 E 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.002 0.001 0.001 67 E 0.001 0.001 0.001 0.001 0.002 0.985 0.001 0.001 0.001 0.001 0.009 0.001 0.001 68 G 0.001 0.001 0.002 0.001 0.005 0.947 0.001 0.001 0.001 0.002 0.042 0.001 0.001 69 A 0.001 0.001 0.008 0.001 0.015 0.832 0.001 0.001 0.001 0.005 0.136 0.001 0.001 70 A 0.001 0.004 0.111 0.001 0.043 0.644 0.001 0.001 0.001 0.047 0.140 0.006 0.003 71 E 0.001 0.001 0.023 0.001 0.017 0.158 0.001 0.001 0.001 0.041 0.757 0.001 0.001 72 G 0.001 0.002 0.059 0.001 0.003 0.006 0.001 0.001 0.002 0.086 0.840 0.001 0.001 73 K 0.001 0.020 0.769 0.002 0.003 0.004 0.001 0.001 0.014 0.103 0.026 0.044 0.013 74 K 0.003 0.069 0.456 0.001 0.005 0.006 0.005 0.003 0.098 0.032 0.018 0.050 0.255 75 V 0.014 0.026 0.245 0.060 0.089 0.045 0.020 0.026 0.204 0.040 0.036 0.036 0.159 76 T 0.014 0.010 0.124 0.332 0.133 0.080 0.013 0.012 0.099 0.068 0.058 0.043 0.017 77 D 0.015 0.013 0.227 0.016 0.153 0.077 0.021 0.016 0.175 0.070 0.075 0.029 0.113 78 L 0.010 0.048 0.341 0.003 0.035 0.139 0.018 0.014 0.095 0.054 0.071 0.068 0.104 79 T 0.011 0.060 0.382 0.004 0.009 0.096 0.014 0.008 0.031 0.242 0.061 0.033 0.049 80 G 0.005 0.024 0.235 0.007 0.031 0.311 0.003 0.002 0.031 0.169 0.141 0.007 0.035 81 E 0.003 0.010 0.109 0.001 0.032 0.482 0.001 0.002 0.005 0.178 0.163 0.010 0.005 82 D 0.001 0.010 0.079 0.001 0.073 0.597 0.001 0.001 0.006 0.054 0.162 0.001 0.013 83 V 0.001 0.002 0.003 0.001 0.090 0.872 0.001 0.001 0.001 0.002 0.030 0.001 0.001 84 A 0.001 0.001 0.003 0.001 0.092 0.848 0.001 0.001 0.001 0.002 0.054 0.001 0.001 85 A 0.001 0.001 0.007 0.001 0.097 0.768 0.001 0.001 0.001 0.014 0.112 0.001 0.001 86 F 0.001 0.016 0.037 0.001 0.030 0.856 0.001 0.001 0.001 0.008 0.050 0.001 0.002 87 C 0.001 0.001 0.012 0.001 0.009 0.971 0.001 0.001 0.001 0.003 0.004 0.001 0.001 88 D 0.001 0.001 0.001 0.001 0.015 0.979 0.001 0.001 0.001 0.001 0.004 0.001 0.001 89 E 0.001 0.001 0.002 0.001 0.024 0.962 0.001 0.001 0.001 0.001 0.011 0.001 0.001 90 L 0.001 0.002 0.003 0.001 0.027 0.946 0.001 0.001 0.001 0.001 0.021 0.001 0.001 91 M 0.001 0.002 0.007 0.001 0.017 0.749 0.001 0.001 0.001 0.006 0.218 0.001 0.001 92 K 0.001 0.001 0.028 0.001 0.038 0.507 0.001 0.001 0.001 0.022 0.403 0.001 0.001 93 D 0.001 0.002 0.112 0.001 0.033 0.524 0.001 0.001 0.001 0.165 0.162 0.001 0.001 94 T 0.001 0.003 0.217 0.001 0.023 0.456 0.001 0.001 0.002 0.146 0.152 0.001 0.001 95 K 0.001 0.008 0.318 0.001 0.032 0.229 0.001 0.001 0.004 0.115 0.292 0.001 0.001 96 T 0.001 0.013 0.220 0.001 0.041 0.366 0.001 0.001 0.010 0.104 0.231 0.007 0.005 97 W 0.001 0.023 0.179 0.001 0.035 0.570 0.001 0.001 0.004 0.082 0.083 0.007 0.013 98 M 0.001 0.008 0.143 0.001 0.008 0.788 0.001 0.001 0.002 0.024 0.008 0.006 0.012 99 D 0.001 0.001 0.007 0.001 0.001 0.986 0.001 0.001 0.001 0.002 0.002 0.001 0.001 100 K 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 101 Y 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 102 R 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 103 T 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.006 0.001 0.001 104 K 0.001 0.001 0.001 0.001 0.002 0.978 0.001 0.001 0.001 0.001 0.019 0.001 0.001 105 L 0.001 0.001 0.005 0.001 0.005 0.953 0.001 0.001 0.001 0.003 0.034 0.001 0.001 106 N 0.001 0.002 0.030 0.001 0.031 0.849 0.001 0.001 0.001 0.013 0.075 0.001 0.001 107 D 0.001 0.001 0.031 0.001 0.105 0.739 0.001 0.001 0.001 0.018 0.104 0.001 0.001 108 S 0.001 0.003 0.025 0.001 0.111 0.658 0.001 0.001 0.001 0.016 0.181 0.001 0.002 109 I 0.001 0.010 0.189 0.001 0.077 0.475 0.001 0.001 0.010 0.074 0.158 0.001 0.004 110 G 0.001 0.019 0.332 0.002 0.060 0.212 0.001 0.001 0.012 0.108 0.242 0.008 0.004 111 R 0.001 0.034 0.397 0.001 0.035 0.094 0.001 0.001 0.012 0.175 0.238 0.002 0.012 112 D 0.001 0.011 0.680 0.001 0.014 0.025 0.001 0.001 0.004 0.218 0.042 0.003 0.003