# TARGET T0283 # Using neural net dunbrack-40pc-3157-t06-IDGaaH13-3-13-7-13-9-13-11-pb-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 16 (1 pb ) # The input amino acid frequencies were determined from # alignment /projects/compbio/experiments/protein-predict/casp7/T0283/T0283.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 7.00874 # Pos AA A B C D E F G H I J K L M N O P 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.062 0.021 0.121 0.076 0.001 0.072 0.005 0.005 0.008 0.017 0.068 0.067 0.438 0.002 0.006 0.031 2 S 0.014 0.012 0.016 0.013 0.001 0.317 0.001 0.001 0.001 0.003 0.095 0.159 0.365 0.001 0.001 0.002 3 F 0.001 0.006 0.002 0.004 0.001 0.027 0.001 0.001 0.001 0.001 0.427 0.135 0.393 0.001 0.001 0.001 4 I 0.001 0.001 0.001 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.019 0.339 0.629 0.001 0.001 0.001 5 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.008 0.986 0.001 0.001 0.001 6 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.986 0.001 0.001 0.003 7 M 0.001 0.001 0.005 0.001 0.001 0.003 0.024 0.001 0.001 0.001 0.002 0.002 0.890 0.066 0.002 0.004 8 I 0.001 0.003 0.009 0.002 0.001 0.002 0.007 0.003 0.001 0.001 0.005 0.003 0.834 0.008 0.120 0.004 9 G 0.001 0.001 0.003 0.003 0.001 0.002 0.001 0.001 0.002 0.002 0.006 0.005 0.851 0.006 0.007 0.108 10 S 0.046 0.002 0.005 0.002 0.001 0.006 0.018 0.001 0.001 0.001 0.011 0.018 0.784 0.070 0.005 0.030 11 L 0.003 0.005 0.037 0.002 0.001 0.006 0.019 0.004 0.001 0.001 0.029 0.022 0.803 0.015 0.046 0.009 12 N 0.002 0.015 0.026 0.009 0.001 0.009 0.009 0.005 0.002 0.002 0.012 0.051 0.778 0.010 0.023 0.047 13 D 0.020 0.004 0.011 0.008 0.001 0.020 0.011 0.003 0.002 0.003 0.031 0.022 0.793 0.022 0.011 0.036 14 K 0.007 0.008 0.048 0.004 0.001 0.016 0.005 0.003 0.001 0.001 0.082 0.046 0.738 0.003 0.029 0.010 15 R 0.003 0.004 0.011 0.004 0.001 0.012 0.002 0.001 0.001 0.001 0.050 0.099 0.797 0.002 0.002 0.013 16 E 0.004 0.006 0.004 0.003 0.001 0.013 0.001 0.001 0.001 0.001 0.019 0.085 0.857 0.002 0.001 0.004 17 W 0.001 0.001 0.003 0.001 0.001 0.011 0.001 0.001 0.001 0.001 0.017 0.020 0.944 0.001 0.001 0.001 18 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.023 0.037 0.934 0.001 0.001 0.001 19 A 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.002 0.023 0.969 0.001 0.001 0.001 20 M 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.993 0.001 0.001 0.001 21 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.006 0.989 0.001 0.001 0.001 22 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.991 0.001 0.002 0.001 23 R 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.989 0.002 0.001 0.003 24 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.985 0.004 0.002 0.001 25 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.008 0.977 0.002 0.005 0.003 26 A 0.003 0.001 0.005 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.002 0.629 0.056 0.008 0.291 27 L 0.003 0.001 0.258 0.002 0.001 0.003 0.023 0.001 0.001 0.001 0.001 0.001 0.658 0.003 0.032 0.014 28 P 0.001 0.001 0.009 0.001 0.001 0.099 0.006 0.001 0.001 0.001 0.019 0.002 0.856 0.001 0.001 0.004 29 K 0.001 0.017 0.001 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.510 0.086 0.373 0.003 0.001 0.002 30 E 0.001 0.008 0.002 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.006 0.453 0.507 0.004 0.007 0.006 31 Y 0.001 0.001 0.015 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.004 0.004 0.965 0.001 0.003 0.004 32 H 0.001 0.001 0.002 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.010 0.014 0.969 0.001 0.001 0.001 33 H 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.020 0.966 0.001 0.001 0.001 34 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.017 0.979 0.001 0.001 0.001 35 Y 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.995 0.001 0.001 0.001 36 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.005 0.992 0.001 0.001 0.001 37 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.995 0.001 0.001 0.001 38 I 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 39 Q 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 40 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.002 0.001 41 Y 0.001 0.001 0.005 0.001 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.932 0.012 0.004 0.037 42 M 0.003 0.003 0.032 0.007 0.001 0.001 0.020 0.001 0.001 0.001 0.001 0.002 0.862 0.013 0.019 0.037 43 W 0.006 0.008 0.097 0.024 0.005 0.015 0.043 0.001 0.001 0.001 0.003 0.003 0.679 0.038 0.012 0.064 44 T 0.017 0.026 0.045 0.039 0.068 0.035 0.139 0.010 0.002 0.002 0.029 0.006 0.261 0.256 0.021 0.044 45 S 0.009 0.088 0.069 0.045 0.047 0.021 0.146 0.076 0.010 0.004 0.044 0.022 0.101 0.116 0.156 0.046 46 G 0.026 0.103 0.149 0.150 0.004 0.013 0.020 0.060 0.077 0.030 0.013 0.033 0.072 0.005 0.117 0.129 47 G 0.236 0.028 0.112 0.077 0.017 0.145 0.038 0.005 0.037 0.085 0.021 0.040 0.071 0.005 0.005 0.077 48 P 0.140 0.089 0.154 0.101 0.026 0.083 0.017 0.023 0.004 0.003 0.251 0.038 0.045 0.009 0.007 0.009 49 T 0.012 0.114 0.090 0.218 0.013 0.089 0.007 0.045 0.016 0.015 0.053 0.261 0.037 0.004 0.018 0.008 50 D 0.021 0.044 0.035 0.084 0.008 0.295 0.006 0.019 0.021 0.026 0.085 0.130 0.198 0.002 0.009 0.019 51 W 0.015 0.013 0.019 0.015 0.006 0.068 0.008 0.005 0.005 0.004 0.486 0.104 0.235 0.006 0.002 0.008 52 Q 0.006 0.037 0.026 0.021 0.001 0.013 0.003 0.009 0.001 0.001 0.074 0.537 0.249 0.001 0.016 0.003 53 D 0.003 0.003 0.010 0.011 0.001 0.053 0.003 0.002 0.003 0.004 0.021 0.092 0.766 0.002 0.003 0.022 54 T 0.003 0.003 0.008 0.004 0.001 0.018 0.002 0.001 0.001 0.001 0.101 0.032 0.820 0.002 0.002 0.003 55 K 0.001 0.004 0.005 0.003 0.001 0.004 0.002 0.001 0.001 0.001 0.022 0.110 0.843 0.001 0.002 0.002 56 R 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.004 0.015 0.971 0.001 0.001 0.003 57 I 0.001 0.001 0.002 0.001 0.001 0.004 0.005 0.001 0.001 0.001 0.005 0.012 0.954 0.010 0.001 0.005 58 F 0.001 0.001 0.002 0.001 0.001 0.003 0.009 0.001 0.001 0.001 0.008 0.011 0.940 0.012 0.011 0.001 59 G 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.009 0.968 0.001 0.008 0.004 60 G 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.013 0.974 0.001 0.001 0.004 61 I 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.015 0.976 0.001 0.001 0.001 62 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.984 0.001 0.001 0.001 63 D 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.997 0.001 0.001 0.001 64 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.994 0.001 0.001 0.001 65 F 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.992 0.001 0.001 0.001 66 E 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.970 0.017 0.001 0.003 67 E 0.001 0.003 0.004 0.005 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.003 0.924 0.008 0.037 0.008 68 G 0.001 0.001 0.015 0.004 0.001 0.003 0.021 0.001 0.001 0.001 0.002 0.002 0.852 0.010 0.009 0.079 69 A 0.015 0.008 0.019 0.007 0.005 0.012 0.019 0.002 0.001 0.001 0.013 0.011 0.846 0.017 0.008 0.018 70 A 0.001 0.001 0.001 0.001 0.047 0.001 0.094 0.001 0.001 0.001 0.002 0.001 0.010 0.839 0.001 0.002 71 E 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.100 0.001 0.001 0.001 0.001 0.004 0.001 0.887 0.001 72 G 0.002 0.002 0.006 0.001 0.001 0.001 0.001 0.001 0.192 0.058 0.002 0.001 0.008 0.001 0.001 0.723 73 K 0.978 0.003 0.008 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.001 74 K 0.011 0.023 0.324 0.027 0.001 0.533 0.002 0.001 0.001 0.003 0.004 0.033 0.031 0.001 0.001 0.005 75 V 0.003 0.015 0.013 0.043 0.004 0.357 0.002 0.001 0.001 0.001 0.484 0.014 0.060 0.001 0.001 0.001 76 T 0.001 0.470 0.014 0.052 0.001 0.004 0.002 0.002 0.002 0.001 0.007 0.415 0.030 0.001 0.002 0.001 77 D 0.007 0.006 0.064 0.284 0.003 0.021 0.007 0.003 0.007 0.001 0.014 0.017 0.513 0.004 0.008 0.042 78 L 0.013 0.010 0.603 0.041 0.024 0.010 0.089 0.001 0.001 0.001 0.009 0.005 0.127 0.031 0.003 0.033 79 T 0.012 0.046 0.088 0.203 0.004 0.163 0.004 0.130 0.002 0.005 0.017 0.031 0.206 0.002 0.076 0.010 80 G 0.005 0.005 0.009 0.016 0.011 0.376 0.006 0.002 0.017 0.042 0.220 0.014 0.245 0.005 0.001 0.028 81 E 0.030 0.124 0.005 0.023 0.001 0.004 0.001 0.014 0.001 0.001 0.313 0.355 0.126 0.001 0.003 0.001 82 D 0.001 0.001 0.002 0.002 0.001 0.181 0.001 0.001 0.002 0.002 0.008 0.302 0.498 0.001 0.001 0.002 83 V 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.096 0.012 0.887 0.001 0.001 0.001 84 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.312 0.682 0.001 0.001 0.001 85 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 86 F 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.996 0.001 0.001 0.001 87 C 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 88 D 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 89 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.996 0.001 0.001 0.001 90 L 0.001 0.001 0.002 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.931 0.039 0.005 0.019 91 M 0.001 0.001 0.005 0.001 0.001 0.001 0.015 0.001 0.001 0.001 0.001 0.001 0.913 0.039 0.017 0.008 92 K 0.001 0.002 0.015 0.001 0.001 0.001 0.017 0.001 0.001 0.001 0.001 0.001 0.771 0.046 0.049 0.094 93 D 0.008 0.005 0.024 0.002 0.001 0.006 0.063 0.001 0.001 0.001 0.009 0.004 0.646 0.055 0.041 0.133 94 T 0.020 0.034 0.098 0.004 0.001 0.019 0.019 0.004 0.001 0.001 0.044 0.025 0.593 0.008 0.076 0.055 95 K 0.042 0.058 0.099 0.019 0.001 0.027 0.016 0.003 0.007 0.005 0.092 0.101 0.406 0.019 0.013 0.094 96 T 0.042 0.029 0.064 0.015 0.001 0.091 0.009 0.003 0.001 0.001 0.053 0.172 0.493 0.003 0.011 0.011 97 W 0.003 0.014 0.032 0.007 0.001 0.062 0.007 0.003 0.001 0.001 0.217 0.061 0.573 0.004 0.003 0.011 98 M 0.001 0.010 0.006 0.006 0.001 0.017 0.003 0.002 0.001 0.001 0.035 0.299 0.614 0.001 0.004 0.002 99 D 0.001 0.001 0.002 0.001 0.001 0.011 0.001 0.001 0.001 0.001 0.031 0.038 0.911 0.001 0.001 0.002 100 K 0.001 0.002 0.003 0.003 0.001 0.002 0.001 0.001 0.001 0.001 0.041 0.048 0.888 0.002 0.001 0.006 101 Y 0.001 0.001 0.003 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.002 0.045 0.940 0.001 0.002 0.001 102 R 0.001 0.001 0.002 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.004 0.002 0.983 0.002 0.001 0.002 103 T 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.011 0.979 0.001 0.001 0.001 104 K 0.001 0.003 0.004 0.003 0.001 0.003 0.006 0.001 0.001 0.001 0.002 0.009 0.857 0.045 0.003 0.064 105 L 0.001 0.003 0.024 0.004 0.001 0.005 0.027 0.001 0.001 0.001 0.004 0.004 0.856 0.019 0.045 0.008 106 N 0.001 0.002 0.019 0.002 0.001 0.022 0.007 0.003 0.001 0.001 0.008 0.006 0.871 0.006 0.028 0.023 107 D 0.009 0.008 0.005 0.006 0.001 0.004 0.002 0.002 0.002 0.001 0.173 0.016 0.725 0.008 0.006 0.032 108 S 0.028 0.017 0.020 0.005 0.001 0.009 0.042 0.001 0.003 0.001 0.014 0.135 0.534 0.144 0.007 0.039 109 I 0.003 0.017 0.309 0.015 0.001 0.004 0.051 0.003 0.001 0.001 0.005 0.011 0.455 0.005 0.100 0.021 110 G 0.005 0.023 0.188 0.061 0.009 0.034 0.053 0.004 0.006 0.005 0.007 0.012 0.398 0.017 0.009 0.169 111 R 0.099 0.026 0.087 0.076 0.058 0.071 0.104 0.016 0.003 0.006 0.079 0.014 0.238 0.085 0.013 0.024 112 D 0.010 0.140 0.085 0.055 0.022 0.080 0.046 0.077 0.009 0.006 0.117 0.069 0.132 0.041 0.086 0.025