# List of top-scoring protein chains for t06-100-30-str2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1b8zA 90 7.92e-02 1huuA a.55.1.1 17902 1nox 205 1.74e-01 1nox d.90.1.1 40242 1kid 203 3.04e-01 1derA c.8.5.1 30771 1evyA 366 7.88e-01 1evyA a.100.1.6,c.2.1.6 18811,30215 1ay7B 89 1.01e+00 1ay7B c.9.1.1 30836 1gk9A 260 1.18e+00 d.153.1.2 65246 1hbnB 442 1.28e+00 1mroB a.89.1.1,d.58.31.2 60900,60901 1a6m 151 1.70e+00 1a6m a.1.1.2 15018 1mla 309 2.25e+00 1mla c.19.1.1,d.58.23.1 31031,39383 1mtzA 293 2.37e+00 c.69.1.7 79467 1rfyA 102 3.05e+00 1tn6A 382 3.18e+00 1ne2A 200 4.35e+00 c.66.1.32 85586 1na3A 91 4.62e+00 k.38.1.1 85481 1akhA 61 5.00e+00 1akhA a.4.1.1 15980 1a41 234 5.18e+00 1a41 d.163.1.2 42174 1g5aA 628 5.41e+00 b.71.1.1,c.1.8.1 65152,65153 1txgA 335 6.85e+00 1jigA 146 8.11e+00 a.25.1.1 71685 1hp1A 516 9.22e+00 d.114.1.1,d.159.1.2 70976,70977 1a5t 334 9.39e+00 1a5t a.80.1.1,c.37.1.20 18450,32423 1ash 150 1.03e+01 1ash a.1.1.2 15622 1nofA 383 1.05e+01 b.71.1.2,c.1.8.3 92020,92021 1jr8A 117 1.10e+01 a.24.15.1 67115 1hh8A 213 1.11e+01 1e96B a.118.8.1 61042 1a59 378 1.24e+01 1aj8A a.103.1.1 18902 1a0p 290 1.24e+01 1a0p a.60.9.1,d.163.1.1 18105,42165 1lo7A 141 1.25e+01 d.38.1.1 74144 1ey4A 149 1.26e+01 1snc b.40.1.1 24815 1iuqA 367 1.27e+01 c.112.1.1 90703 1hz4A 373 1.40e+01 a.118.8.2 65960 1r45A 204 1.41e+01 1g2nA 264 1.42e+01 1lbd a.123.1.1 60227 1ek6A 348 1.47e+01 1xel c.2.1.2 29800 1gx3A 284 1.51e+01 d.3.1.5 70678 1bs0A 384 1.54e+01 1bs0A c.67.1.4 34490 1a8l 226 1.62e+01 1a8l c.47.1.2,c.47.1.2 32777,32778 1nkd 65 1.63e+01 1nkd a.30.1.1 16974 1alu 186 1.63e+01 1alu a.26.1.1 16826 1kw4A 89 1.66e+01 a.60.1.2 73077 1s99A 200 1.66e+01 1mgtA 174 1.71e+01 1mgtA a.4.2.1,c.55.7.1 16078,33753 1aisB 200 1.77e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1h99A 224 1.79e+01 a.142.1.1,a.142.1.1 60814,60815 1ka1A 357 1.80e+01 e.7.1.1 68369 1d4oA 184 1.97e+01 1d4oA c.31.1.4 31748 1q6zA 528 1.98e+01 1ew6A 137 1.99e+01 1ewaA a.1.1.2 15637 16vpA 366 2.01e+01 16vpA d.180.1.1 42601 1lqtA 456 2.02e+01 c.3.1.1,c.4.1.1 74198,74199 1af7 274 2.11e+01 1af7 a.58.1.1,c.66.1.8 17928,34203 1j77A 209 2.12e+01 1j77A a.132.1.2 62674 1fj2A 232 2.18e+01 1auoA c.69.1.14 34720 1k2xA 177 2.40e+01 d.153.1.5 90929 1k07A 263 2.53e+01 d.157.1.1 77218 1dmgA 225 2.55e+01 1dmgA c.22.1.1 31036 1e7lA 157 2.60e+01 1en7A a.140.4.1,d.4.1.5 64728,64729 1lc0A 294 2.63e+01 c.2.1.3,d.81.1.4 73823,73824 1nogA 177 2.70e+01 a.25.2.2 85923 1io7A 368 2.70e+01 1f4tA a.104.1.1 18971 2d5cA 263 2.72e+01 1muwA 386 2.72e+01 c.1.15.3 79495 1ars 396 2.90e+01 1ajsA c.67.1.1 34287 1f1eA 154 3.09e+01 a.22.1.2 64927 1kolA 398 3.10e+01 b.35.1.2,c.2.1.1 77474,77475 1n93X 375 3.16e+01 a.206.1.1 91707 1aj8A 371 3.23e+01 1aj8A a.103.1.1 18900 1cb0A 283 3.28e+01 1cb0A c.56.2.1 33790 1s1fA 406 3.30e+01 1mixA 206 3.33e+01 a.11.2.1,b.55.1.5 79166,79167 1bx4A 345 3.34e+01 1bx4A c.72.1.1 34935 1m33A 258 3.36e+01 c.69.1.26 78514 1l1lA 739 3.40e+01 c.7.1.4 73470 1hd2A 161 3.41e+01 c.47.1.10 60962 1bgc 174 3.44e+01 1bgc a.26.1.1 16822 1u0fA 564 3.48e+01 1lk9A 448 3.48e+01 c.67.1.1 78057 1gheA 177 3.48e+01 d.108.1.1 76222 1e6uA 321 3.51e+01 1bsvA c.2.1.2 29805 1nbuA 119 3.52e+01 d.96.1.3 91767 1elwA 118 3.57e+01 1a17 a.118.8.1 19207 1j30A 144 3.65e+01 a.25.1.1 90806 1k7iA 479 3.71e+01 b.80.7.1,d.92.1.6 77281,77282 1lfwA 470 3.77e+01 c.56.5.4,d.58.19.1 77942,77943 1k3xA 262 3.79e+01 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1lj8A 493 3.86e+01 a.100.1.9,c.2.1.6 90392,90393 1ail 73 3.93e+01 1ail a.16.1.1 16381 1go3F 107 3.98e+01 a.60.8.2 65407 1gu7A 364 4.03e+01 b.35.1.2,c.2.1.1 83321,83322 1k6iA 352 4.05e+01 c.2.1.2 68223 1in6A 334 4.05e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 1elkA 157 4.13e+01 1dvpA a.118.9.2 19217 1bg6 359 4.14e+01 1bg6 a.100.1.5,c.2.1.6 18810,30214 1cy5A 97 4.16e+01 1cy5A a.77.1.3 18430 1g8mA 593 4.28e+01 1g8mA c.24.1.3,c.97.2.1 60371,60372 1ah7 245 4.45e+01 1ah7 a.124.1.1 19339 1m1nB 522 4.47e+01 c.92.2.3 78418 1el5A 389 4.54e+01 1b3mA c.3.1.2,d.16.1.3 30369,37937 1jyhA 157 4.58e+01 d.60.1.3 71956 1m1nA 491 4.62e+01 c.92.2.3 78417 1n2eA 300 4.63e+01 c.26.1.4 85268 1ed8A 449 4.64e+01 1b8jA c.76.1.1 34988 1cv8 174 4.74e+01 1cv8 d.3.1.1 37089 1d2nA 272 4.74e+01 1d2nA c.37.1.20 32428 1lucA 355 4.82e+01 1lucA c.1.16.1 29547 1kgsA 225 4.99e+01 a.4.6.1,c.23.1.1 68596,68597 1eca 136 5.02e+01 1flp a.1.1.2 15209 1gci 269 5.23e+01 1gci c.41.1.1 32503 1eluA 390 5.24e+01 1elqA c.67.1.3 34434 1cqxA 403 5.31e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1ls1A 295 5.50e+01 a.24.13.1,c.37.1.10 78170,78171 1tu7A 208 5.52e+01 1iab 200 5.55e+01 1iae d.92.1.8 40312 1jykA 254 5.55e+01 c.68.1.13 67458 1eyeA 280 5.79e+01 1aj2 c.1.21.1 29672 1m70A 190 5.81e+01 a.3.1.4,a.3.1.4 91200,91201 1iv3A 152 6.00e+01 d.79.5.1 76828 1d8wA 426 6.04e+01 1de5A c.1.15.2 29394 1a76 326 6.16e+01 1a76 a.60.7.1,c.120.1.2 18091,33361 1nkiA 135 6.18e+01 d.32.1.2 91941 1lb3A 182 6.23e+01 a.25.1.1 77873 1m2dA 110 6.23e+01 c.47.1.11 78476 1zelA 298 6.36e+01 1mun 225 6.48e+01 1mun a.96.1.2 18744 1fk5A 93 6.55e+01 1rzl a.52.1.1 59866 1l9xA 315 6.56e+01 c.23.16.1 73762 1n6aA 259 6.67e+01 b.76.2.1,b.85.7.1 80121,80122 1koe 172 6.74e+01 1koe d.169.1.5 42448 1iq4A 179 6.85e+01 1iq4A d.77.1.1 62641 1fxoA 293 6.99e+01 1g0rA c.68.1.6 34524 1atzA 189 7.01e+01 1atzA c.62.1.1 34132 1duvG 333 7.07e+01 1othA c.78.1.1,c.78.1.1 35228,35229 1dosA 358 7.09e+01 1dosA c.1.10.2 29175 1hz6A 72 7.18e+01 2ptl d.15.7.1 61429 1mk4A 157 7.20e+01 d.108.1.1 84979 1kngA 156 7.32e+01 c.47.1.10 72777 1ks8A 433 7.43e+01 a.102.1.2 77519 1ds1A 324 7.47e+01 1drtA b.82.2.2 28127 1aquA 297 7.66e+01 1aquA c.37.1.5 31942 1a7w 69 7.71e+01 1a7w a.22.1.2 16477 1nc5A 373 7.73e+01 a.102.1.6 85548 1cex 214 7.73e+01 1cex c.69.1.30 31285 1byi 224 7.78e+01 1byi c.37.1.10 32199 1l6rA 227 7.87e+01 c.108.1.10 77768 1lwbA 122 7.91e+01 a.133.1.3 84728 1amuA 563 7.96e+01 1amuA e.23.1.1 43351 1gsoA 431 8.00e+01 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1a8s 273 8.16e+01 1brt c.69.1.12 34710 1aj2 282 8.44e+01 1aj2 c.1.21.1 29665 1lqvA 193 8.46e+01 d.19.1.1 74206 1bupA 386 8.47e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1dcs 311 8.77e+01 1dcs b.82.2.1 28124 1d4xG 126 8.81e+01 1d0nA d.109.1.1 59109 1ga6A 372 8.90e+01 1ga1A c.41.1.2 32556 1dqpA 230 8.90e+01 1dqnA c.61.1.1 34069 1ng6A 148 8.99e+01 a.182.1.1 85670