# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1i0dA 332 7.04e-01 1pscA c.1.9.3 61487 1l9xA 315 1.23e+00 c.23.16.1 73762 1gk9A 260 1.30e+00 d.153.1.2 65246 1ajsA 412 1.57e+00 1ajsA c.67.1.1 34276 1kw4A 89 1.77e+00 a.60.1.2 73077 1e6uA 321 1.95e+00 1bsvA c.2.1.2 29805 1dcs 311 2.07e+00 1dcs b.82.2.1 28124 1mtzA 293 2.25e+00 c.69.1.7 79467 1ey4A 149 2.43e+00 1snc b.40.1.1 24815 1fsgA 233 2.51e+00 1qk3A c.61.1.1 34029 1c1kA 217 2.57e+00 1c1kA a.120.1.1 19239 1dytA 133 2.66e+00 7rsa d.5.1.1 37288 1akhA 61 4.37e+00 1akhA a.4.1.1 15980 2gf9A 189 4.41e+00 1f1mA 164 4.44e+00 1ggqA a.24.12.1 59598 1iw0A 215 4.67e+00 a.132.1.1 83720 1r45A 204 4.76e+00 1apyA 162 5.49e+00 1apyA d.153.1.5 42004 1kjwA 295 5.69e+00 b.34.2.1,c.37.1.1 68643,68644 1fj2A 232 5.86e+00 1auoA c.69.1.14 34720 1d8wA 426 5.87e+00 1de5A c.1.15.2 29394 1ispA 181 6.86e+00 c.69.1.18 76778 1f5nA 592 8.06e+00 1dg3A a.114.1.1,c.37.1.8 19077,32152 1b8zA 90 8.51e+00 1huuA a.55.1.1 17902 1gu7A 364 9.16e+00 b.35.1.2,c.2.1.1 83321,83322 1ay7B 89 9.72e+00 1ay7B c.9.1.1 30836 1gnlA 544 9.82e+00 e.26.1.1 70287 1mc2A 122 1.04e+01 a.133.1.2 74622 1dozA 309 1.06e+01 1ak1 c.92.1.1 35592 1aj8A 371 1.18e+01 1aj8A a.103.1.1 18900 1iq4A 179 1.20e+01 1iq4A d.77.1.1 62641 1a5t 334 1.22e+01 1a5t a.80.1.1,c.37.1.20 18450,32423 1fiuA 286 1.31e+01 1fiuA c.52.1.10 33317 1ah7 245 1.31e+01 1ah7 a.124.1.1 19339 1d2nA 272 1.43e+01 1d2nA c.37.1.20 32428 1df4A 68 1.72e+01 1aikN h.3.2.1 45719 1n62B 809 1.74e+01 d.41.1.1,d.133.1.1 80092,80093 1chd 203 1.88e+01 1chd c.40.1.1 32478 1f1eA 154 2.09e+01 a.22.1.2 64927 1zk5A 176 2.23e+01 1ae9A 179 2.25e+01 1ae9A d.163.1.1 42153 1jyhA 157 2.36e+01 d.60.1.3 71956 1m2dA 110 2.48e+01 c.47.1.11 78476 1hx6A 394 2.54e+01 1cjdA b.121.2.1,b.121.2.1 58995,58996 1lo7A 141 2.55e+01 d.38.1.1 74144 1kr7A 110 2.55e+01 a.1.1.4 72890 1jx4A 352 2.58e+01 d.240.1.1,e.8.1.7 90378,90379 1e9gA 286 2.66e+01 1wgjA b.40.5.1 59393 1aol 228 2.67e+01 1aol b.20.1.1 23840 1m4lA 307 2.70e+01 c.56.5.1 78604 1ne2A 200 2.71e+01 c.66.1.32 85586 1mtyB 384 2.73e+01 1mtyB a.25.1.2 16740 1kid 203 2.75e+01 1derA c.8.5.1 30771 1f2tA 149 2.80e+01 1f2tA c.37.1.12 32373 1ew6A 137 2.89e+01 1ewaA a.1.1.2 15637 1ccwA 137 2.98e+01 1be1 c.23.6.1 31238 1a9xB 379 3.00e+01 1c3oB c.8.3.1,c.23.16.1 30732,31409 1f9vA 347 3.02e+01 1bg2 c.37.1.9 59745 1a53 247 3.06e+01 1a53 c.1.2.4 28564 1gx3A 284 3.09e+01 d.3.1.5 70678 1iujA 106 3.23e+01 d.58.4.5 90701 1lqtA 456 3.26e+01 c.3.1.1,c.4.1.1 74198,74199 1lycA 343 3.33e+01 a.93.1.1 74344 1tn6B 437 3.51e+01 1mdoA 393 3.57e+01 c.67.1.4 79013 1k3xA 262 3.65e+01 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1iktA 120 3.65e+01 d.106.1.1 66188 1nogA 177 3.66e+01 a.25.2.2 85923 1b3aA 67 3.71e+01 1b3aA d.9.1.1 37410 1nc5A 373 3.73e+01 a.102.1.6 85548 1aisB 200 3.78e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1mxrA 375 3.90e+01 a.25.1.2 85197 1a78A 134 3.95e+01 1c1lA b.29.1.3 24212 1k07A 263 3.98e+01 d.157.1.1 77218 1jfuA 186 3.98e+01 c.47.1.10 62940 1ek6A 348 4.04e+01 1xel c.2.1.2 29800 1hz6A 72 4.06e+01 2ptl d.15.7.1 61429 1cex 214 4.09e+01 1cex c.69.1.30 31285 1d4oA 184 4.14e+01 1d4oA c.31.1.4 31748 1j30A 144 4.15e+01 a.25.1.1 90806 1m1nB 522 4.20e+01 c.92.2.3 78418 1ks9A 291 4.34e+01 a.100.1.7,c.2.1.6 68857,68858 1ihjA 98 4.35e+01 1pdr b.36.1.1 62382 1m65A 245 4.40e+01 c.6.3.1 84847 1e58A 249 4.50e+01 1qhfA c.60.1.1 59262 1gk9B 557 4.57e+01 1tkeA 224 4.70e+01 1dqpA 230 4.71e+01 1dqnA c.61.1.1 34069 1i0lA 221 4.77e+01 c.61.1.1 71096 1j77A 209 4.83e+01 1j77A a.132.1.2 62674 1hnjA 317 4.86e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1eyeA 280 4.91e+01 1aj2 c.1.21.1 29672 1rfyA 102 4.91e+01 1gq8A 319 5.03e+01 b.80.1.5 70350 1eokA 290 5.04e+01 1eokA c.1.8.5 28991 1ng6A 148 5.05e+01 a.182.1.1 85670 1kwfA 363 5.15e+01 a.102.1.2 73078 1u0fA 564 5.25e+01 1bqcA 302 5.60e+01 1bqcA c.1.8.3 28831 1hm9A 468 5.61e+01 b.81.1.4,c.68.1.5 65866,65867 1af7 274 5.65e+01 1af7 a.58.1.1,c.66.1.8 17928,34203 1ak0 270 5.81e+01 1ak0 a.124.1.2 19345 1hdkA 141 5.83e+01 b.29.1.3 65807 1lqvA 193 5.85e+01 d.19.1.1 74206 1btkA 169 6.25e+01 1btkA b.55.1.1 26959 1eyhA 144 6.35e+01 1eduA a.118.9.1 19214 1gheA 177 6.49e+01 d.108.1.1 76222 1mpgA 282 6.54e+01 1mpgA a.96.1.3,d.129.1.2 18747,41296 1lvmA 229 6.65e+01 b.47.1.3 78243 1ja9A 274 6.67e+01 c.2.1.2 62817 1l9lA 74 6.69e+01 a.64.1.1 77827 1m33A 258 6.76e+01 c.69.1.26 78514 1fm0D 81 6.87e+01 1fmaD d.15.3.1 37642 1kptA 105 7.07e+01 1kptA d.70.1.1 39588 1s2oA 244 7.09e+01 1dlwA 116 7.26e+01 1dlyA a.1.1.1 14982 1ew0A 130 7.30e+01 1drmA d.110.3.2 40905 1gu2A 124 7.30e+01 a.3.1.1 76348 1mgtA 174 7.35e+01 1mgtA a.4.2.1,c.55.7.1 16078,33753 1m40A 263 7.40e+01 e.3.1.1 74437 1mk4A 157 7.55e+01 d.108.1.1 84979 1jf8A 131 7.86e+01 c.44.1.1 66621 1dbxA 158 8.01e+01 1dbuA d.116.1.1 40928 1na3A 91 8.06e+01 k.38.1.1 85481 1i1wA 303 8.21e+01 c.1.8.3 76732 1nbuA 119 8.29e+01 d.96.1.3 91767 1tr9A 341 8.32e+01 1edg 380 8.37e+01 1edg c.1.8.3 28807 1mqvA 125 8.50e+01 a.24.3.2 79415 1jykA 254 8.53e+01 c.68.1.13 67458 1a76 326 8.55e+01 1a76 a.60.7.1,c.120.1.2 18091,33361 1zelA 298 8.55e+01 1e85A 127 8.60e+01 1bbhA a.24.3.2 16549 1dfmA 223 8.67e+01 1d2iA c.52.1.5 33295 1tn6A 382 8.71e+01 1ars 396 8.89e+01 1ajsA c.67.1.1 34287 1jakA 512 8.93e+01 c.1.8.6,d.92.2.1 66472,66473 1t9hA 307 8.97e+01