# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1tn6A 382 2.83e-01 1r45A 204 4.41e-01 1kw4A 89 1.01e+00 a.60.1.2 73077 1ey4A 149 1.18e+00 1snc b.40.1.1 24815 1lniA 96 1.30e+00 d.1.1.2 74046 1n62B 809 2.16e+00 d.41.1.1,d.133.1.1 80092,80093 1jyhA 157 3.44e+00 d.60.1.3 71956 1dozA 309 3.94e+00 1ak1 c.92.1.1 35592 1ae9A 179 4.18e+00 1ae9A d.163.1.1 42153 1ispA 181 4.89e+00 c.69.1.18 76778 1gk9B 557 5.13e+00 1kr7A 110 5.67e+00 a.1.1.4 72890 1gk9A 260 5.93e+00 d.153.1.2 65246 1f5nA 592 6.07e+00 1dg3A a.114.1.1,c.37.1.8 19077,32152 1iw0A 215 6.38e+00 a.132.1.1 83720 1d8wA 426 6.63e+00 1de5A c.1.15.2 29394 1gvjA 146 7.14e+00 a.4.5.21 90525 1dytA 133 7.17e+00 7rsa d.5.1.1 37288 1m4lA 307 7.87e+00 c.56.5.1 78604 1h99A 224 8.07e+00 a.142.1.1,a.142.1.1 60814,60815 1a6m 151 8.37e+00 1a6m a.1.1.2 15018 1iq4A 179 8.65e+00 1iq4A d.77.1.1 62641 1dcs 311 8.80e+00 1dcs b.82.2.1 28124 1f1eA 154 9.14e+00 a.22.1.2 64927 1aol 228 9.22e+00 1aol b.20.1.1 23840 1ek6A 348 9.38e+00 1xel c.2.1.2 29800 1l9xA 315 9.38e+00 c.23.16.1 73762 1aisB 200 1.01e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1zk5A 176 1.22e+01 1ju2A 536 1.32e+01 c.3.1.2,d.16.1.1 77169,77170 1dlwA 116 1.35e+01 1dlyA a.1.1.1 14982 1jz8A 1023 1.48e+01 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1m2dA 110 1.49e+01 c.47.1.11 78476 1lj8A 493 1.51e+01 a.100.1.9,c.2.1.6 90392,90393 1gq8A 319 1.51e+01 b.80.1.5 70350 1k6iA 352 1.53e+01 c.2.1.2 68223 1a5t 334 1.56e+01 1a5t a.80.1.1,c.37.1.20 18450,32423 1j77A 209 1.58e+01 1j77A a.132.1.2 62674 1evlA 401 1.68e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1ekgA 127 1.68e+01 1dlxA d.82.2.1 40021 1mk4A 157 1.69e+01 d.108.1.1 84979 1fj2A 232 1.81e+01 1auoA c.69.1.14 34720 1e6uA 321 1.87e+01 1bsvA c.2.1.2 29805 1mc2A 122 2.11e+01 a.133.1.2 74622 1d2vA 104 2.11e+01 1d2vA a.93.1.2 18697 1apyA 162 2.18e+01 1apyA d.153.1.5 42004 1eyeA 280 2.32e+01 1aj2 c.1.21.1 29672 1d0qA 103 2.36e+01 1d0qA g.41.3.2 45208 1ccwA 137 2.65e+01 1be1 c.23.6.1 31238 1ty9A 222 2.83e+01 1ay7B 89 2.86e+01 1ay7B c.9.1.1 30836 1iktA 120 2.89e+01 d.106.1.1 66188 1jg1A 235 3.01e+01 c.66.1.7 66661 1aqzA 149 3.19e+01 1aqzA d.1.1.3 36238 1bgc 174 3.25e+01 1bgc a.26.1.1 16822 1m0kA 262 3.28e+01 f.13.1.1 78344 1cqxA 403 3.53e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1hnjA 317 3.61e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1mtyB 384 3.76e+01 1mtyB a.25.1.2 16740 1eca 136 3.80e+01 1flp a.1.1.2 15209 1i0dA 332 3.88e+01 1pscA c.1.9.3 61487 1akhA 61 3.89e+01 1akhA a.4.1.1 15980 1gppA 237 3.99e+01 b.86.1.2 76262 1ag6 99 4.03e+01 1plc b.6.1.1 22857 1j27A 102 4.04e+01 d.58.50.1 90778 1nc5A 373 4.18e+01 a.102.1.6 85548 1a2pA 110 4.20e+01 1b20A d.1.1.2 36140 2gf9A 189 4.26e+01 1k3yA 221 4.27e+01 a.45.1.1,c.47.1.5 77245,77246 1gs9A 165 4.30e+01 a.24.1.1 83313 1mj5A 302 4.75e+01 c.69.1.8 91285 1hdkA 141 4.78e+01 b.29.1.3 65807 1jx4A 352 4.91e+01 d.240.1.1,e.8.1.7 90378,90379 1jkeA 145 5.06e+01 c.110.1.1 66791 1lucA 355 5.06e+01 1lucA c.1.16.1 29547 1d2nA 272 5.23e+01 1d2nA c.37.1.20 32428 1mtzA 293 5.36e+01 c.69.1.7 79467 1acc 735 5.46e+01 1acc f.11.1.1 43828 1abz 40 5.47e+01 1abz k.15.1.1 46442 1hz6A 72 5.51e+01 2ptl d.15.7.1 61429 1df4A 68 5.60e+01 1aikN h.3.2.1 45719 1a9xB 379 5.66e+01 1c3oB c.8.3.1,c.23.16.1 30732,31409 1molA 94 5.66e+01 1molA d.17.1.1 37988 1ls1A 295 5.68e+01 a.24.13.1,c.37.1.10 78170,78171 1e2wA 251 5.76e+01 1hcz b.2.6.1,b.84.2.2 22466,28252 1jf8A 131 5.86e+01 c.44.1.1 66621 1gu7A 364 5.92e+01 b.35.1.2,c.2.1.1 83321,83322 2b4nA 42 5.94e+01 1rfyA 102 6.03e+01 1iujA 106 6.14e+01 d.58.4.5 90701 1nbuA 119 6.26e+01 d.96.1.3 91767 1bs0A 384 6.28e+01 1bs0A c.67.1.4 34490 1ew0A 130 6.34e+01 1drmA d.110.3.2 40905 1gp6A 356 6.66e+01 b.82.2.1 65441 1iuqA 367 6.84e+01 c.112.1.1 90703 1e85A 127 6.99e+01 1bbhA a.24.3.2 16549 1bqcA 302 7.08e+01 1bqcA c.1.8.3 28831 1msk 331 7.29e+01 1msk d.173.1.1 42495 1lvmA 229 7.29e+01 b.47.1.3 78243 1a93B 34 7.38e+01 1a93B h.1.3.1 45545 1nogA 177 7.39e+01 a.25.2.2 85923 1gnlA 544 7.60e+01 e.26.1.1 70287 1ls9A 91 7.70e+01 a.3.1.1 78177 1kptA 105 7.88e+01 1kptA d.70.1.1 39588 1mh1 186 7.93e+01 1eesA c.37.1.8 32002 1twyA 290 8.03e+01 1nox 205 8.08e+01 1nox d.90.1.1 40242 1a76 326 8.16e+01 1a76 a.60.7.1,c.120.1.2 18091,33361 1aba 87 8.20e+01 1aba c.47.1.1 32760 1gy7A 125 8.22e+01 d.17.4.2 70738 1duvG 333 8.25e+01 1othA c.78.1.1,c.78.1.1 35228,35229 1lqtA 456 8.30e+01 c.3.1.1,c.4.1.1 74198,74199 1alu 186 8.41e+01 1alu a.26.1.1 16826 1lo7A 141 8.57e+01 d.38.1.1 74144 1ak0 270 8.62e+01 1ak0 a.124.1.2 19345 1h72C 296 8.82e+01 d.14.1.5,d.58.26.1 60712,60713 1f32A 149 8.85e+01 1f32A d.62.1.1 39539 1ew6A 137 8.91e+01 1ewaA a.1.1.2 15637