# TARGET T0283 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0283.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 7.04591 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.007 0.005 0.007 0.077 0.116 0.789 2 S 0.010 0.009 0.005 0.294 0.105 0.578 3 F 0.001 0.001 0.013 0.937 0.020 0.027 4 I 0.002 0.001 0.012 0.969 0.011 0.005 5 E 0.003 0.001 0.026 0.945 0.020 0.006 6 K 0.004 0.001 0.025 0.941 0.019 0.011 7 M 0.003 0.001 0.014 0.957 0.014 0.011 8 I 0.001 0.001 0.012 0.938 0.020 0.028 9 G 0.002 0.001 0.022 0.862 0.047 0.067 10 S 0.004 0.004 0.039 0.718 0.114 0.121 11 L 0.002 0.002 0.049 0.736 0.140 0.070 12 N 0.002 0.002 0.040 0.727 0.141 0.088 13 D 0.001 0.001 0.027 0.822 0.077 0.072 14 K 0.002 0.001 0.008 0.930 0.027 0.032 15 R 0.003 0.001 0.004 0.951 0.015 0.025 16 E 0.005 0.002 0.003 0.962 0.010 0.019 17 W 0.001 0.001 0.001 0.991 0.003 0.004 18 K 0.001 0.001 0.003 0.991 0.003 0.002 19 A 0.001 0.001 0.002 0.993 0.002 0.002 20 M 0.001 0.001 0.002 0.994 0.002 0.002 21 E 0.001 0.001 0.002 0.996 0.001 0.001 22 A 0.001 0.001 0.003 0.991 0.003 0.003 23 R 0.001 0.001 0.006 0.984 0.005 0.005 24 A 0.001 0.001 0.020 0.943 0.022 0.014 25 K 0.001 0.001 0.035 0.888 0.043 0.033 26 A 0.001 0.002 0.040 0.578 0.092 0.288 27 L 0.001 0.006 0.010 0.116 0.188 0.679 28 P 0.001 0.002 0.019 0.163 0.205 0.610 29 K 0.001 0.001 0.051 0.904 0.028 0.016 30 E 0.001 0.001 0.035 0.948 0.012 0.005 31 Y 0.001 0.001 0.009 0.987 0.002 0.002 32 H 0.001 0.001 0.002 0.993 0.002 0.003 33 H 0.001 0.001 0.002 0.995 0.002 0.001 34 A 0.001 0.001 0.001 0.996 0.002 0.001 35 Y 0.001 0.001 0.001 0.998 0.001 0.001 36 K 0.001 0.001 0.001 0.999 0.001 0.001 37 A 0.001 0.001 0.001 0.999 0.001 0.001 38 I 0.001 0.001 0.001 0.997 0.001 0.001 39 Q 0.001 0.001 0.003 0.993 0.002 0.002 40 K 0.001 0.001 0.004 0.987 0.005 0.003 41 Y 0.001 0.001 0.007 0.974 0.010 0.008 42 M 0.005 0.002 0.018 0.910 0.033 0.032 43 W 0.018 0.004 0.070 0.755 0.104 0.048 44 T 0.029 0.006 0.052 0.713 0.127 0.073 45 S 0.023 0.012 0.026 0.406 0.204 0.329 46 G 0.013 0.012 0.016 0.082 0.279 0.598 47 G 0.020 0.019 0.017 0.028 0.403 0.513 48 P 0.039 0.028 0.036 0.064 0.475 0.358 49 T 0.037 0.040 0.034 0.082 0.430 0.377 50 D 0.031 0.025 0.046 0.207 0.360 0.331 51 W 0.011 0.007 0.169 0.575 0.172 0.066 52 Q 0.016 0.008 0.140 0.579 0.191 0.066 53 D 0.016 0.007 0.112 0.630 0.156 0.079 54 T 0.013 0.005 0.036 0.846 0.057 0.042 55 K 0.010 0.002 0.031 0.876 0.049 0.031 56 R 0.004 0.001 0.024 0.935 0.022 0.013 57 I 0.004 0.002 0.021 0.941 0.018 0.014 58 F 0.002 0.001 0.013 0.954 0.015 0.015 59 G 0.001 0.001 0.007 0.976 0.008 0.008 60 G 0.001 0.001 0.005 0.988 0.003 0.004 61 I 0.001 0.001 0.001 0.998 0.001 0.001 62 L 0.001 0.001 0.001 0.997 0.001 0.001 63 D 0.001 0.001 0.002 0.997 0.001 0.001 64 L 0.001 0.001 0.004 0.993 0.002 0.001 65 F 0.001 0.001 0.003 0.993 0.002 0.002 66 E 0.001 0.001 0.006 0.990 0.003 0.001 67 E 0.001 0.001 0.006 0.988 0.004 0.002 68 G 0.002 0.001 0.016 0.941 0.017 0.022 69 A 0.003 0.003 0.053 0.845 0.065 0.031 70 A 0.003 0.003 0.068 0.673 0.246 0.006 71 E 0.002 0.001 0.026 0.594 0.350 0.026 72 G 0.003 0.002 0.011 0.151 0.591 0.242 73 K 0.044 0.044 0.005 0.042 0.393 0.472 74 K 0.187 0.058 0.004 0.105 0.067 0.579 75 V 0.106 0.009 0.043 0.714 0.056 0.073 76 T 0.113 0.002 0.073 0.716 0.050 0.046 77 D 0.086 0.003 0.127 0.693 0.062 0.028 78 L 0.112 0.014 0.036 0.621 0.124 0.092 79 T 0.052 0.008 0.014 0.661 0.091 0.174 80 G 0.010 0.002 0.013 0.870 0.042 0.063 81 E 0.002 0.001 0.015 0.957 0.016 0.010 82 D 0.003 0.001 0.034 0.917 0.025 0.019 83 V 0.001 0.001 0.011 0.976 0.007 0.005 84 A 0.001 0.001 0.008 0.976 0.008 0.006 85 A 0.001 0.001 0.008 0.968 0.011 0.010 86 F 0.001 0.001 0.011 0.967 0.011 0.009 87 C 0.001 0.001 0.007 0.974 0.008 0.009 88 D 0.001 0.001 0.012 0.976 0.006 0.005 89 E 0.001 0.001 0.009 0.982 0.005 0.004 90 L 0.001 0.001 0.009 0.972 0.010 0.008 91 M 0.001 0.001 0.009 0.933 0.037 0.018 92 K 0.001 0.001 0.011 0.866 0.088 0.033 93 D 0.001 0.003 0.016 0.371 0.364 0.245 94 T 0.001 0.002 0.033 0.230 0.417 0.316 95 K 0.004 0.005 0.020 0.163 0.337 0.472 96 T 0.004 0.004 0.010 0.607 0.114 0.260 97 W 0.001 0.001 0.004 0.977 0.009 0.009 98 M 0.001 0.001 0.001 0.984 0.005 0.008 99 D 0.001 0.001 0.002 0.989 0.005 0.004 100 K 0.001 0.001 0.001 0.993 0.002 0.002 101 Y 0.001 0.001 0.001 0.996 0.001 0.001 102 R 0.001 0.001 0.001 0.996 0.001 0.001 103 T 0.001 0.001 0.001 0.995 0.002 0.001 104 K 0.001 0.001 0.002 0.990 0.003 0.004 105 L 0.001 0.001 0.005 0.977 0.008 0.009 106 N 0.001 0.001 0.014 0.940 0.026 0.019 107 D 0.001 0.001 0.025 0.927 0.027 0.020 108 S 0.002 0.001 0.042 0.812 0.069 0.074 109 I 0.009 0.005 0.068 0.515 0.182 0.221 110 G 0.015 0.009 0.035 0.222 0.217 0.503 111 R 0.020 0.011 0.017 0.134 0.167 0.652 112 D 0.012 0.004 0.002 0.020 0.084 0.878