(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.soe.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0283 BH3980, Bacillus halodurans, 112 res
                  10        20        30        40         50        60
                  |         |         |         |          |         |
   1 ...MSFIEKMIG.SLNDKREWKAMEARAKALPKEYHHAYKAIQKYMWTSG.GPTDWQDTKRIFGG
   2 ...MSFIEKMIG.SLNDKREWKAMEARAKALPKEYHHAYKAIQKYMWTSG.GPTDWQDTKRIFGG
   3 ...MSIFEKIIG.SLDDKREWKAMEARAKALPSEYSAAYKAIQKYMWTAGgGPTDWKGTNRIFTG
   4 m..LEIFKKIIG.---DKKEYRMMMARVAALPEDYQFVFKKIQNYMWNFS.-TGNGMDMLHIQYE
   5 m..LEIFKKLIG.---DKKEYRMMMARVAALPEDYQFVFKKIQNYMWNFS.-TGNGMDMLHIQYE
   6 m..LEMFKKLIG.---DKKEYKMMMARVEALPEDYQFVFKKIQNYMWNFS.-AGNGMDMLHIQYE
   7 m..LEMFKKLIG.---DKKEYKMMMARVAALPEDYQFVFKKIQNYMWNFS.-AGNGMDMLHIQYE
   8 m..LEMFKKLIG.---DKKEYKMMMARVEALPEDYQFVFKKIQNYMWNFS.-AGNGMDMLHIQYE
   9 m..LEMFKKLIG.---DKKEYKMMMARVGALPEDYQFVFKKIQNYMWNFS.-AGNGMDMLHIQYE
  10 m..LEIFKKLIG.---DKKEYRMMMARVAALSEDYQFVFKKIQNYMWNFS.-TGNGMDMLHIQYE
  11 ...M----RIQD.IIEGKKEWRAHKARVKALPKDYQIVYKEIQKYLFKV-.GPVELTDGIGLLSG
  12 ...M----RIQD.IIEGKKEWRGHMARVKALPRDYQIVYKELQKYLFKV-.GPVELTDGMGLLSG
  13 ...M-VLDKISD.LLAEKKDWQEMQNRAKKLPKDFYQAYRSIQKYMFKM-.GATDW----HIFND
  14 ...M-ILEKISD.VLKEKREWQAMENRAKNLPKDFYLAYKAIQKYMFNM-.GETDW----HIFTD
  15 ...MNFWEKITG.S-DMTKEWKAFESRVQKLPADYQAAWEKISLNLWPHS.DFTG-RNLMPILDG
  16 ...MSI-KKII-.--EGKREWRAHVSRVEKLPKDYQIVYKEIQKYLFKV-.GPVELNEGIGLLSE
  17 ...MSNFKALIKkVVGDKKEYKEYKRRIAALPVEYRQVFQEIEKYAWHFS.DHSG-ANMFNALTD
  18 trqRNIVDRMIG.-LEEKREFREFEERAKNLGPDYYKDYCELKRYVW-IS.GASKWSDFKFIFNQ
  19 aehRNIVDRMIG.-LEEKREFHEFENRAQKLGENYYEDYKELKKYIWH-S.GVTKWADFKFIFGQ
  20 ...--MFNWYKK.YREEKRDYKQYKKRIAALPEDYKTAMKAIETYLWNFA.---KGAGMFEILKN
  21 ...--MFKWYTK.YREEKRDYKQYKKRIDALPEDYKTAMKAIETYLWNFA.---KGAGMFEILKN
  22 ...MNFLEKITG.S-DMTKEMKGFETRAKVLPAEYRAAWEEITSNLWLHS.DFTG-RNLMPILDS


              70        80        90          100          110     
              |         |         |            |            |     
   1 ILDLFEEGAAEGKKVTDLTGEDVAAFCDELMKD..TK.TWMDKYRTKLNDSI...GRD...
   2 ILDLFEEGAAEGKKVTDLTGEDVAAFCDELMKD..TK.TWMDKYRTKLNDSI...GRD...
   3 ILDLFEEGAAEGKKVTDLTGEDVAAFCDELVKD..EK.TWNDKYRKKLNDTI...GRG...
   4 LIDLFEAGAAEGRQVLDITGEDVASFADELVAN..AK.TYVSKYREDLNESI...MKKlrk
   5 LIDLFEAGAAEGRQVLDITGEDVASFADELVAN..AK.TYVSKYREDLNESI...MKKlrk
   6 LIDLFEAGAAEGRQVLDITGDDVASFADELVAN..AK.TYVSKYREDLNESI...MKKlrk
   7 LIDLFEAGAAEGRQVLDITGEDVASFADELVAN..AK.TYVSKYREDLNESI...MKKlrk
   8 LIDLFEAGAAEGRQVLDITGEDVASFADELVAN..AK.TYVSKYREDLNESI...MKKlrk
   9 LIDLFEAGAAEGRQVLEITGEDVASFADELVAN..AK.TYVSKYREDLNESI...MKQlrk
  10 LIDLFEAGAAEGRQVLDITGEDVASFADELVAN..AK.TYVSKYREDLNESI...MKKlrk
  11 IIDLFEKGAHMGKDVLEVTGEDVAAFCDELIKD..SK.TYADLYQESVNQTVneaMKE...
  12 IIDLFEEGAALGKGVLEVTGRDVAAFCDDLIKD..SK.TYADIYQESADQEV...CKAmkk
  13 IIELFELAVVDGRSPAEVLGDDVATFADKLLSD..NKeDWRNKYRQALNDYF...AQK...
  14 IIELFELAVIDGRTLAEVLGEDSSAFADELLSE..NKqDWRETYRQELNDYF...AQK...
  15 VLGLLEETAAEGQRVQEVLGDDIKGFCAALAGEegAK.TYRDKWREQLNHNI...AKKlgk
  16 ILGFFEEGAAAGKGVLDVTGTDVAAFCDALIGD..SK.TYADLYQESIQQHVdkaMKN...
  17 LLDLFEEGAANGTPIKNITGEKVGDFAETIVNEv.AG.KWTDKQKEKLNHQF...SKQ...
  18 LLDLLEEAKGQKRKLTDLIGTDVAAFIDEMIDD..-K.GWEKKQKVKLNRAV...KK-...
  19 VLDLLEEAKIQDKELTDLIGPDVATFIDEMMDD..-N.SWGKKQKNKLNKEL...KNGfr.
  20 VLEMFENAAADNLELKAVVGDDLAEFADNLLSEfpEE.TWMDKQRQKLRDSI...K--...
  21 VLEMFENAAADQLELKAVVGDDLAEFADSLLNEypEE.TWMDKQRSKLRNSI...K--...
  22 ALELLEVASADGQSVEEVLGDDIEGFCAALVGDqgAK.TFRDKWRDQLNKNV...ARKlgg