# List of top-scoring protein chains for T0283.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1iarB 207 7.31e-01 1iarB b.1.2.1,b.1.2.1 22037,22038 2a3nA 355 1.73e+00 1tffA 234 1.78e+00 d.3.1.11 106854 1iruB 233 4.02e+00 d.153.1.4 71353 1vjnA 220 4.42e+00 d.157.1.4 100825 1wk1A 150 7.24e+00 1ukgA 252 8.08e+00 b.29.1.1 99489 1puiA 210 8.83e+00 c.37.1.8 88292 1x94A 191 8.86e+00 c.80.1.3 109522 1ztuA 341 9.51e+00 1grj 158 9.97e+00 1grj a.2.1.1,d.26.1.2 15691,38433 2essA 248 1.22e+01 1z00B 84 1.24e+01 2a1jA 63 1.45e+01 1o0sA 605 1.82e+01 c.2.1.7,c.58.1.3 86540,86541 1ekeA 230 1.88e+01 1ekeA c.55.3.1 33572 1tjoA 182 2.03e+01 1b8zA 90 2.12e+01 1huuA a.55.1.1 17902 1wrjA 156 2.13e+01 1z4eA 153 2.25e+01 1w1wA 430 2.46e+01 1cm8A 367 2.49e+01 1hcl d.144.1.7 41651 1t3oA 95 2.77e+01 1riyA 90 2.86e+01 1jyhA 157 2.93e+01 d.60.1.3 71956 1pwuA 776 3.08e+01 d.92.1.14,d.92.1.14,d.166.1.1 95244,95245,95246 1j7nA 776 3.10e+01 d.92.1.14,d.92.1.14,d.166.1.1 66409,66410,66411 1colA 204 3.12e+01 1a87 f.1.1.1 43378 1vpqA 273 3.13e+01 1hdkA 141 3.19e+01 b.29.1.3 65807 1lcl 142 3.21e+01 1lcl b.29.1.3 24216 2aazA 317 3.36e+01 1qouA 181 3.41e+01 1qouA b.17.1.1 23707 2abl 163 3.98e+01 1bbzA b.34.2.1,d.93.1.1 24481,40525 2a14A 263 4.43e+01 1qh8B 519 4.67e+01 1qguB c.92.2.3 35634 2fdoA 94 4.96e+01 1f75A 249 5.19e+01 1f75A c.101.1.1 59662 1wg7A 150 5.25e+01 1rhgA 174 5.37e+01 1bgc a.26.1.1 16812 1cd9A 175 5.38e+01 1bgc a.26.1.1 16815 1sheA 103 5.70e+01 d.274.1.1 105551 2hipA 72 5.75e+01 g.35.1.1 44991 1l9xA 315 5.82e+01 c.23.16.1 73762 1gnc 178 5.86e+01 1bgc a.26.1.1 16821 1pih 73 5.87e+01 g.35.1.1 44994 1bwnA 169 5.89e+01 1btkA b.55.1.1 26961 1nfdF 222 5.90e+01 1igtB b.1.1.1,b.1.1.2 20187,21203 1b55A 169 5.90e+01 1btkA b.55.1.1 26963 1btkA 169 5.91e+01 1btkA b.55.1.1 26959 1or4A 178 5.92e+01 a.1.1.2 93447 2anuA 255 6.03e+01 1gnlA 544 6.05e+01 e.26.1.1 70287 1fhe 217 6.18e+01 1b8xA a.45.1.1,c.47.1.5 17726,33020 1gm9A 209 6.27e+01 d.153.1.2 65304 1gm7A 209 6.28e+01 d.153.1.2 65302 1k7dA 209 6.28e+01 d.153.1.2 90946 1kecA 209 6.28e+01 d.153.1.2 90957 1h2gB 557 6.36e+01 1ovwA 398 6.40e+01 1celA b.29.1.10 24300 1we8A 104 6.57e+01 2fh5A 185 6.58e+01 3ovwA 411 6.64e+01 1celA b.29.1.10 24292 1z81A 229 6.66e+01 1otdA 125 6.66e+01 d.110.3.1 93513 1lshA 1056 6.75e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1q23A 219 7.00e+01 c.43.1.1 104481 2bwtA 440 7.11e+01 1gk9A 260 7.20e+01 d.153.1.2 65246 1nq4A 95 7.21e+01 a.28.1.1 92045 1vgwA 231 7.23e+01 c.68.1.13 100612 1e6vC 258 7.28e+01 1mroC d.58.31.1 39439 1scfA 273 7.30e+01 1exzA a.26.1.2 16873 1qo7A 394 7.31e+01 1qo7A c.69.1.11 34697 1mozA 183 7.40e+01 c.37.1.8 79368 1tx4A 198 7.61e+01 1tx4A a.116.1.1 19098 1grnB 203 7.61e+01 1tx4A a.116.1.1 19106 1vgzA 241 7.63e+01 c.68.1.13 100624 1ea9C 583 7.68e+01 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 1ltsA 185 7.69e+01 1lt3A d.166.1.1 42229 1am4A 199 7.71e+01 1tx4A a.116.1.1 19100 2fflA 756 7.73e+01 1ltaA 188 7.73e+01 1lt3A d.166.1.1 42232 1ltgA 191 7.78e+01 1lt3A d.166.1.1 42235 1ltiA 192 7.78e+01 1lt3A d.166.1.1 42233 2csn 297 7.78e+01 1csn d.144.1.7 41665 1csn 298 7.79e+01 1csn d.144.1.7 41664 2f2fB 283 7.94e+01 1h3zA 109 8.02e+01 b.34.9.2 83471 1exzA 141 8.08e+01 1exzA a.26.1.2 16877 2bwyA 440 8.18e+01 1xfnA 113 8.28e+01 1odvA 100 8.34e+01 d.110.3.1 86887 2bwwA 440 8.39e+01 1gntA 553 8.47e+01 e.26.1.1 70290 1te4A 131 8.53e+01 a.118.1.16 106794 1jaw 440 8.55e+01 1az9 c.55.2.1,d.127.1.1 33549,41166 1wl9A 440 8.56e+01 1e1dA 553 8.62e+01 1e1dA e.26.1.1 43363 2bwuA 440 8.64e+01 1pswA 348 8.75e+01 c.87.1.7 88287 2bwvA 440 8.86e+01 1ixcA 294 9.00e+01 a.4.5.37,c.94.1.1 83764,83765