# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1tffA 234 4.42e-01 d.3.1.11 106854 1dmtA 696 6.81e-01 1dmtA d.92.1.4 40296 1r1hA 696 1.73e+00 d.92.1.4 104756 1mojA 182 2.10e+00 a.25.1.1 91367 1colA 204 2.38e+00 1a87 f.1.1.1 43378 1wgzA 510 2.58e+00 1gk9A 260 2.80e+00 d.153.1.2 65246 1az9 457 2.87e+00 1az9 c.55.2.1,d.127.1.1 33547,41164 2bwvA 440 2.87e+00 1wl9A 440 2.87e+00 1csn 298 3.61e+00 1csn d.144.1.7 41664 1b8zA 90 3.94e+00 1huuA a.55.1.1 17902 2fbwC 141 3.95e+00 1srvA 145 3.95e+00 1derA c.8.5.1 30817 1e3aA 260 3.98e+00 1ajqA d.153.1.2 41838 1tjoA 182 4.08e+00 1w2yA 229 4.80e+00 a.204.1.1 109140 1yz7A 188 5.15e+00 1spgB 147 6.37e+00 1cg5B a.1.1.2 15588 1t9kA 347 6.44e+00 c.124.1.5 106721 1dbhA 354 7.51e+00 1awe a.87.1.1,b.55.1.1 18514,26967 1v9dA 340 7.81e+00 a.207.1.1 100535 1sheA 103 7.82e+00 d.274.1.1 105551 1gvhA 396 8.18e+00 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1l9hA 349 8.27e+00 f.13.1.2 73720 1qkrA 188 8.60e+00 1qkrA a.24.9.1 16628 2fflA 756 9.01e+00 2mgb 154 9.60e+00 1a6m a.1.1.2 15102 1wlsA 328 9.74e+00 1kid 203 1.07e+01 1derA c.8.5.1 30771 1iq8A 582 1.08e+01 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 103m 154 1.10e+01 1a6m a.1.1.2 15124 2abqA 306 1.15e+01 1on2A 142 1.17e+01 a.4.5.24,a.76.1.1 87103,87104 1t9xA 1049 1.18e+01 1urvA 190 1.36e+01 1ut0A 190 1.36e+01 a.1.1.2 108012 1tx4A 198 1.44e+01 1tx4A a.116.1.1 19098 1mll 154 1.45e+01 1a6m a.1.1.2 15057 1mlg 154 1.48e+01 1a6m a.1.1.2 15104 1io7A 368 1.48e+01 1f4tA a.104.1.1 18971 1nd6A 354 1.51e+01 c.60.1.2 80407 2hpaA 342 1.51e+01 1cviA c.60.1.2 33985 1nh1A 330 1.54e+01 e.45.1.1 91871 1mlo 154 1.57e+01 1a6m a.1.1.2 15085 2spl 154 1.62e+01 1a6m a.1.1.2 15047 1mym 154 1.63e+01 1a6m a.1.1.2 15054 1a6m 151 1.63e+01 1a6m a.1.1.2 15018 1mod 154 1.67e+01 1a6m a.1.1.2 15107 1m1zA 513 1.68e+01 c.26.2.1,d.153.1.1 78457,78458 1oyeA 1049 1.69e+01 d.58.44.1,d.58.44.1,d.58.44.1,d.58.44.1,d.225.1.1,d.225.1.1,f.35.1.1,f.35.1.1 87587,87588,87589,87590,87591,87592,87593,87594 2ex3B 264 1.73e+01 1w7jA 795 1.80e+01 1qs1A 462 1.81e+01 1qs1A d.166.1.1,d.166.1.1 42260,42261 1qghA 156 1.84e+01 1qghA a.25.1.1 16728 2g38B 198 1.89e+01 2mgg 154 1.91e+01 1a6m a.1.1.2 15069 1r2zA 274 1.91e+01 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 1hzxA 349 1.93e+01 1f88A f.13.1.2 61466 1xfiA 367 1.93e+01 e.50.1.1 109584 1kktA 511 1.94e+01 a.102.2.1 68687 1jq5A 370 2.00e+01 e.22.1.2 67084 1wtyA 119 2.01e+01 1n1cA 217 2.03e+01 a.184.1.1 85254 2be4A 272 2.11e+01 1rro 108 2.13e+01 1a75A a.39.1.4 17195 1l1zA 274 2.14e+01 a.156.1.2,b.113.1.1,g.39.1.8 75911,75912,75913 1gkzA 388 2.17e+01 a.29.5.1,d.122.1.4 65268,65269 1z4eA 153 2.22e+01 1qojA 63 2.26e+01 1qojA a.2.9.1 15716 1fezA 256 2.29e+01 1fezA c.108.1.3 43343 1bzpA 153 2.31e+01 1a6m a.1.1.2 15020 1jigA 146 2.34e+01 a.25.1.1 71685 1gjnA 153 2.38e+01 a.1.1.2 70191 1dwtA 153 2.46e+01 1a6m a.1.1.2 15190 1yjsA 419 2.51e+01 1kl1A 419 2.51e+01 c.67.1.4 72663 1j8uA 325 2.60e+01 d.178.1.1 71611 1rw6A 210 2.67e+01 a.47.4.1 105113 1e94F 449 2.69e+01 1do0A c.37.1.20 32443 4pah 308 2.70e+01 4pah d.178.1.1 42576 1ei5A 520 2.71e+01 1ei5A b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1kz7A 353 2.74e+01 a.87.1.1,b.55.1.1 73333,73334 1fxxA 482 2.75e+01 1fxxA c.55.3.5 33726 1vgmA 378 2.76e+01 1fmhB 33 2.87e+01 1fmhB k.6.1.1 46410 1rqlA 267 2.97e+01 c.108.1.3 97750 1wa8A 99 3.10e+01 1wnfA 328 3.12e+01 1t0qA 498 3.13e+01 a.25.1.2 106220 1a41 234 3.22e+01 1a41 d.163.1.2 42174 1qh8B 519 3.30e+01 1qguB c.92.2.3 35634 2ax6A 256 3.39e+01 1x9bA 53 3.48e+01 1vin 268 3.49e+01 1vin a.74.1.1,a.74.1.1 18354,18355 1wm1A 317 3.54e+01 c.69.1.7 109405 1e7lA 157 3.57e+01 1en7A a.140.4.1,d.4.1.5 64728,64729 1em9A 154 3.69e+01 1d1dA a.73.1.1 18333 1pi1A 185 3.85e+01 a.29.7.1 94699 1nw2A 105 3.91e+01 c.47.1.1 92215 1q3eA 207 3.98e+01 b.82.3.2 95669 1nswA 105 4.00e+01 c.47.1.1 92097 1d8dA 377 4.02e+01 1ft1A a.118.6.1 19185 1nrjB 218 4.03e+01 c.37.1.8 86125 1vz6A 393 4.07e+01 d.154.1.2 108949 2ahrA 259 4.16e+01 1zoyC 140 4.17e+01 1rwtA 232 4.18e+01 f.43.1.1 97992 2fh5A 185 4.24e+01 1jhsA 188 4.29e+01 d.107.1.1 84172 1hlvA 131 4.40e+01 a.4.1.7,a.4.1.7 65854,65855 1d2zB 153 4.43e+01 1d2zB a.77.1.2 18439 1vpqA 273 4.43e+01 1u19A 349 4.49e+01 1g5aA 628 4.50e+01 b.71.1.1,c.1.8.1 65152,65153 1bg1A 722 4.53e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17767,22461,40527 1yv5A 374 4.54e+01 1jr8A 117 4.61e+01 a.24.15.1 67115 1nox 205 4.69e+01 1nox d.90.1.1 40242 2f94F 350 4.70e+01 1wgwA 99 4.73e+01 1miwA 404 4.76e+01 a.173.1.1,d.218.1.4 79162,79163 2bdeA 470 4.84e+01 1wdcB 156 5.02e+01 1wdcB a.39.1.5 17302 2fvhA 120 5.14e+01 1kk8B 139 5.17e+01 a.39.1.5 77430 1z63A 500 5.21e+01 1f75A 249 5.25e+01 1f75A c.101.1.1 59662 1s2xA 206 5.27e+01 a.47.3.1 105229 1aszB 490 5.37e+01 1b8aA b.40.4.1,d.104.1.1 25241,40762 1fkmA 396 5.44e+01 1fkmA a.69.2.1,a.69.2.1 18315,18316 1qc7A 101 5.57e+01 1qc7A a.118.14.1 18456 1hbnB 442 5.61e+01 1mroB a.89.1.1,d.58.31.2 60900,60901 1mroB 442 5.64e+01 1mroB a.89.1.1,d.58.31.2 18531,39449 2g7lA 243 5.72e+01 1upaA 573 5.77e+01 c.31.1.3,c.36.1.5,c.36.1.9 99714,99715,99716 1k8kA 418 5.80e+01 c.55.1.1,c.55.1.1 68305,68306 1jl5A 454 5.81e+01 c.10.2.6 66830 1yq7A 374 5.81e+01 2eboA 74 5.86e+01 2eboA h.3.2.1 45754 1nwzA 125 5.90e+01 d.110.3.1 86370 1tia 279 5.93e+01 3tgl c.69.1.17 34737 1bpyA 335 5.99e+01 1bpyA a.60.6.1,a.60.12.1,d.218.1.2 17980,75819,75820 1v6tA 255 6.02e+01 1n35A 1267 6.04e+01 e.8.1.4 79935 1epuA 591 6.14e+01 1dn1A e.25.1.1 43358 1xqwA 293 6.15e+01 1u7kA 131 6.23e+01 1ey4A 149 6.26e+01 1snc b.40.1.1 24815 2genA 197 6.29e+01 2bx2L 517 6.32e+01 1j34A 129 6.37e+01 d.169.1.1 84048 1e19A 314 6.39e+01 1b7bA c.73.1.1 34967 1xvhA 129 6.45e+01 1wmiA 90 6.53e+01 2anuA 255 6.54e+01 2a14A 263 6.56e+01 1ld8A 382 6.56e+01 a.118.6.1 73838 1chuA 540 6.65e+01 1chuA a.7.3.1,c.3.1.4,d.168.1.1 16325,30424,42307 2c1vA 338 6.66e+01 1n93X 375 6.67e+01 a.206.1.1 91707 1euhA 475 6.80e+01 1euhA c.82.1.1 35369 1z5zA 271 6.85e+01 1txgA 335 6.88e+01 2b8wA 328 6.93e+01 1or4A 178 7.00e+01 a.1.1.2 93447 1qrvA 73 7.01e+01 1cktA a.21.1.1 16425 1tn6A 382 7.09e+01 1swvA 267 7.14e+01 1khoA 370 7.18e+01 a.124.1.1,b.12.1.3 72489,72490 1w53A 84 7.20e+01 a.186.1.2 109175 1qmqA 414 7.22e+01 1phd a.104.1.1 18907 1wd7A 261 7.24e+01 1tk9A 188 7.26e+01 c.80.1.3 107082 1nm2A 317 7.28e+01 c.19.1.1,d.58.23.1 80654,80655 1n1bA 549 7.34e+01 a.102.4.1,a.128.1.3 79799,79800 1ybhA 590 7.34e+01 1p4wA 99 7.34e+01 a.4.6.2 87783 1tv9A 335 7.36e+01 2cwyA 94 7.38e+01 2f4qA 346 7.38e+01 1yc9A 442 7.39e+01 1irqA 71 7.44e+01 a.43.1.4 66297 2fmpA 335 7.49e+01 1sesA 421 7.49e+01 1sesA a.2.7.1,d.104.1.1 15710,40710 1u59A 287 7.67e+01 d.144.1.7 107681 1re9A 414 7.70e+01 1a0cA 438 7.73e+01 1a0cA c.1.15.3 29529 1twiA 434 7.74e+01 b.49.2.3,c.1.6.1 107399,107400 1iseA 185 7.78e+01 d.67.3.1 90691 3pyp 125 7.81e+01 3pyp d.110.3.1 40897 2c9lY 63 7.82e+01 1nbuA 119 7.84e+01 d.96.1.3 91767 1e5rA 290 7.85e+01 1e5rA b.82.2.4 59276 1wleA 501 7.87e+01 1yt3A 375 8.01e+01 2dh4A 340 8.05e+01 2c2aA 258 8.06e+01 1y74A 57 8.12e+01 1rcwA 231 8.13e+01 a.132.1.4 97299 1qtrA 317 8.14e+01 1qtrA c.69.1.7 34660 1jq0A 84 8.29e+01 h.3.2.1 71786 1ay7B 89 8.30e+01 1ay7B c.9.1.1 30836 1mtzA 293 8.38e+01 c.69.1.7 79467 1obbA 480 8.40e+01 c.2.1.5,d.162.1.2 86760,86761 1eq6A 189 8.46e+01 1eq6A d.107.1.1 40796 1bqbA 301 8.59e+01 1hyt d.92.1.2 58962 1f0kA 364 8.64e+01 1f0kA c.87.1.2 35465 1omwA 689 8.67e+01 a.91.1.1,b.55.1.1,d.144.1.7 87086,87087,87088 2aplA 157 8.88e+01 1vkmA 297 8.92e+01 c.138.1.1 108670 1w98B 283 8.92e+01 1y2mA 716 8.95e+01 1wovA 250 8.96e+01 1gpmA 525 8.98e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826