# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1tffA 234 1.21e-01 d.3.1.11 106854 1tx4A 198 7.80e-01 1tx4A a.116.1.1 19098 1d8dA 377 2.65e+00 1ft1A a.118.6.1 19185 1ekeA 230 2.90e+00 1ekeA c.55.3.1 33572 1ld8A 382 3.03e+00 a.118.6.1 73838 1or4A 178 3.39e+00 a.1.1.2 93447 1tn6A 382 3.50e+00 2aamA 309 4.33e+00 1r45A 204 5.89e+00 1rpa 342 6.76e+00 1cviA c.60.1.2 33983 1nd6A 354 7.31e+00 c.60.1.2 80407 1urvA 190 7.59e+00 1ut0A 190 7.59e+00 a.1.1.2 108012 1rro 108 7.82e+00 1a75A a.39.1.4 17195 2bxkA 585 8.48e+00 1tikA 213 8.85e+00 c.23.5.3 107003 1qj2B 809 9.02e+00 1qj2B 1zxiB 809 9.10e+00 1oroA 213 9.72e+00 1opr c.61.1.1 34093 1f75A 249 1.03e+01 1f75A c.101.1.1 59662 1o0wA 252 1.12e+01 a.149.1.1,d.50.1.1 80751,80752 1q0sA 259 1.13e+01 c.66.1.28 95509 2essA 248 1.14e+01 1txjA 171 1.15e+01 b.88.1.2 107424 2hpaA 342 1.18e+01 1cviA c.60.1.2 33985 2br9A 234 1.18e+01 1kqzA 273 1.33e+01 c.1.8.5 68844 1grj 158 1.39e+01 1grj a.2.1.1,d.26.1.2 15691,38433 1gvhA 396 1.41e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1q44A 326 1.42e+01 c.37.1.5 95779 1nnwA 252 1.49e+01 d.159.1.5 80674 1pylA 97 1.54e+01 d.1.1.2 104391 1kw4A 89 1.54e+01 a.60.1.2 73077 1e7aA 585 1.57e+01 1bj5 a.126.1.1,a.126.1.1,a.126.1.1 19360,19361,19362 2a90A 240 1.59e+01 1z4eA 153 1.64e+01 1wl9A 440 1.65e+01 2cg4A 152 1.66e+01 2bwvA 440 1.70e+01 1az9 457 1.72e+01 1az9 c.55.2.1,d.127.1.1 33547,41164 1n5uA 585 1.75e+01 a.126.1.1,a.126.1.1,a.126.1.1 85339,85340,85341 1iarB 207 1.80e+01 1iarB b.1.2.1,b.1.2.1 22037,22038 1lniA 96 1.86e+01 d.1.1.2 74046 1h0oA 390 1.89e+01 a.25.1.2 70845 2gdzA 267 1.93e+01 2sns 149 2.03e+01 1snc b.40.1.1 24860 1n62B 809 2.13e+01 d.41.1.1,d.133.1.1 80092,80093 1ey4A 149 2.14e+01 1snc b.40.1.1 24815 1ki1B 352 2.22e+01 a.87.1.1,b.55.1.1 72497,72498 1kshA 186 2.24e+01 c.37.1.8 72914 1s2xA 206 2.28e+01 a.47.3.1 105229 1xsm 390 2.30e+01 1xsm a.25.1.2 16804 1t46A 313 2.31e+01 d.144.1.7 106397 1xqoA 256 2.41e+01 2b2aA 199 2.50e+01 1w9cA 321 2.53e+01 2ae8A 221 2.63e+01 1rgeA 96 2.64e+01 1rgeA d.1.1.2 36028 2b8wA 328 2.64e+01 1spgA 144 2.65e+01 1abwA a.1.1.2 15409 1yf3A 259 2.71e+01 1o08A 221 2.74e+01 c.108.1.6 86525 1n3oA 252 2.74e+01 b.29.1.1 79967 1yz7A 188 2.95e+01 1vprA 374 3.00e+01 1pbwA 216 3.06e+01 1pbwA a.116.1.1 19103 1lw7A 365 3.18e+01 c.26.1.3,c.37.1.1 74295,74296 1vgwA 231 3.24e+01 c.68.1.13 100612 1vor1 73 3.30e+01 1m3uA 264 3.31e+01 c.1.12.8 84784 1mw5A 187 3.41e+01 d.259.1.1 91477 1ukgA 252 3.50e+01 b.29.1.1 99489 1yewB 247 3.51e+01 1m4rA 151 3.57e+01 a.26.1.3 84799 1sr4B 261 3.67e+01 d.151.1.1 105949 1e3aA 260 3.69e+01 1ajqA d.153.1.2 41838 1hs7A 97 3.78e+01 1hs7A a.47.2.1 61236 1z6nA 167 3.80e+01 1ydgA 211 4.00e+01 1lh0A 213 4.01e+01 c.61.1.1 73896 2astC 69 4.02e+01 1opr 213 4.20e+01 1opr c.61.1.1 34091 1mq4A 272 4.22e+01 d.144.1.7 91391 1z00B 84 4.42e+01 2fiqA 420 4.46e+01 1rw6A 210 4.47e+01 a.47.4.1 105113 1e94F 449 4.50e+01 1do0A c.37.1.20 32443 1eiwA 111 4.53e+01 1eiwA c.23.3.1 31130 1wwlA 312 4.57e+01 1sheA 103 4.57e+01 d.274.1.1 105551 1nwzA 125 4.61e+01 d.110.3.1 86370 1j7gA 144 4.72e+01 c.110.1.1 84130 1p68A 102 4.79e+01 k.8.1.1 94158 1z5sD 83 4.82e+01 1jsuC 84 4.86e+01 1jsuC j.55.1.1 46339 1jmsA 381 4.87e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1w68A 390 4.89e+01 a.25.1.2 109216 2a9iA 113 4.89e+01 3pyp 125 5.01e+01 3pyp d.110.3.1 40897 1j9lA 247 5.07e+01 c.106.1.1 62762 1jyhA 157 5.08e+01 d.60.1.3 71956 1dbhA 354 5.13e+01 1awe a.87.1.1,b.55.1.1 18514,26967 2b3nA 159 5.16e+01 1v8cA 168 5.19e+01 d.15.3.1,d.129.5.1 100495,100496 1dozA 309 5.21e+01 1ak1 c.92.1.1 35592 2fvhA 120 5.25e+01 1pq1A 196 5.27e+01 f.1.4.1 94986 1x9bA 53 5.31e+01 2ac2A 309 5.37e+01 1r9cA 139 5.38e+01 d.32.1.2 97255 2be4A 272 5.43e+01 1d2zB 153 5.44e+01 1d2zB a.77.1.2 18439 2ac4A 309 5.54e+01 1b35B 255 5.57e+01 1b35B b.121.4.1 23334 1z5bA 469 5.64e+01 1x8yA 86 5.70e+01 1idrA 136 5.77e+01 1dlyA a.1.1.1 62301 1m12A 84 5.90e+01 a.64.1.1 84745 1u7kA 131 6.14e+01 1wzdA 215 6.22e+01 1xfiA 367 6.22e+01 e.50.1.1 109584 2g45A 129 6.27e+01 1o9wA 177 6.30e+01 b.2.3.5 86713 1lq7A 67 6.41e+01 k.9.1.1 74183 1wmiA 90 6.42e+01 1nh1A 330 6.42e+01 e.45.1.1 91871 1p3dA 475 6.52e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1whtA 256 6.55e+01 1ivyA c.69.1.5 34646 1x9zA 188 6.70e+01 1i6wA 181 6.72e+01 1i6wA c.69.1.18 61859 1fmhB 33 6.74e+01 1fmhB k.6.1.1 46410 2bw3A 534 6.75e+01 1ispA 181 6.77e+01 c.69.1.18 76778 1ae9A 179 6.81e+01 1ae9A d.163.1.1 42153 1tfuA 157 6.92e+01 c.26.1.3 106859 2bylA 439 7.03e+01 2c4jA 218 7.10e+01 1rcb 129 7.10e+01 1rcb a.26.1.2 16854 1hziA 129 7.20e+01 1rcb a.26.1.2 61449 1qf6A 642 7.25e+01 1qf6A c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1 33210,39551,39562,40759 1sa3A 262 7.26e+01 c.52.1.23 105400 1em2A 229 7.62e+01 1em2A d.129.3.2 41321 2aelA 374 7.66e+01 1gk9B 557 7.66e+01 1q59A 172 7.83e+01 f.1.4.1 95881 1whsA 255 7.88e+01 1ivyA c.69.1.5 34649 1qjbA 245 7.93e+01 1qjaA a.118.7.1 19202 1csn 298 7.95e+01 1csn d.144.1.7 41664 1r7cA 31 7.98e+01 j.35.1.1 104831 2spl 154 7.99e+01 1a6m a.1.1.2 15047 1yyqA 374 8.03e+01 1af3 196 8.03e+01 1maz f.1.4.1 43397 1li1A 229 8.05e+01 d.169.1.6,d.169.1.6 73898,73899 1d8wA 426 8.09e+01 1de5A c.1.15.2 29394 1e3aB 560 8.12e+01 1ajqB 1zn8A 180 8.17e+01 1mmiA 366 8.17e+01 d.131.1.1,d.131.1.1,d.131.1.1 91309,91310,91311 1y13A 181 8.26e+01 1iw0A 215 8.39e+01 a.132.1.1 83720 1twfH 146 8.46e+01 1h99A 224 8.49e+01 a.142.1.1,a.142.1.1 60814,60815 1f5nA 592 8.74e+01 1dg3A a.114.1.1,c.37.1.8 19077,32152 1mu5A 471 8.85e+01 a.156.1.3,d.14.1.3,d.122.1.2 79472,79473,79474 1gvjA 146 8.85e+01 a.4.5.21 90525 1t61A 229 8.90e+01 d.169.1.6,d.169.1.6 106529,106530 1k8kA 418 8.91e+01 c.55.1.1,c.55.1.1 68305,68306