# List of top-scoring protein chains for T0195.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1orvA 728 5.49e-19 b.70.3.1 87354 c.69.1.24 87355 1j2eA 740 6.42e-19 1nu6A 728 6.44e-19 1pfqA 731 6.44e-19 b.70.3.1 88061 c.69.1.24 88062 1jjfA 268 6.11e-18 c.69.1.2 66765 1jt2A 268 4.75e-17 c.69.1.2 71858 1f0nA 285 2.87e-11 1dqyA c.69.1.3 34636 1dqyA 283 7.28e-10 1dqyA c.69.1.3 34640 1dqzA 280 8.24e-10 1dqyA c.69.1.3 34638 1r88A 280 7.23e-09 1auoA 218 2.72e-06 1auoA c.69.1.14 34716 1c4xA 285 3.33e-06 1c4xA c.69.1.10 34684 1c7iA 489 1.33e-05 1thg c.69.1.1 34632 1c7jA 489 1.65e-05 2bce c.69.1.1 34631 1qz3A 310 2.01e-05 1lzlA 323 2.32e-05 c.69.1.2 78306 1qe3A 489 2.61e-05 2bce c.69.1.1 34630 1jjiA 311 3.20e-05 c.69.1.2 66766 1k4yA 534 3.35e-05 c.69.1.1 72069 1mx1A 548 3.44e-05 c.69.1.1 85165 1evqA 310 3.47e-05 1jkmA c.69.1.2 34635 1fj2A 232 4.09e-05 1auoA c.69.1.14 34720 1h2xA 710 1.77e-04 b.69.7.1 76598 c.69.1.4 76599 1e5tA 710 1.89e-04 1qfmA b.69.7.1 27676 c.69.1.4 34644 1h2wA 710 1.89e-04 b.69.7.1 76596 c.69.1.4 76597 1gkkA 297 4.70e-04 c.69.1.2 65248 1o6gA 710 6.20e-04 b.69.7.1 81087 c.69.1.4 81088 1gklA 297 6.55e-04 c.69.1.2 65250 1jkmB 361 8.11e-04 1jkmA c.69.1.2 34634 1jkmA 358 8.11e-04 1jkmA c.69.1.2 34633 1o6fA 710 8.71e-04 b.69.7.1 81085 c.69.1.4 81086 1jfrA 262 8.86e-04 1jfrA c.69.1.16 34724 1e8nA 710 9.66e-04 1qfmA b.69.7.1 27675 c.69.1.4 34643 1azwA 313 1.20e-03 1qtrA c.69.1.7 34658 1vj5A 555 1.22e-03 1iupA 282 1.65e-03 c.69.1.10 76815 1q0rA 298 1.90e-03 5tgl 269 4.13e-03 3tgl c.69.1.17 34736 1tgl 269 4.13e-03 3tgl c.69.1.17 34734 4tgl 269 4.13e-03 3tgl c.69.1.17 34735 1ufoA 238 4.34e-03 1crl 534 4.69e-03 1thg c.69.1.17 34765 1lpp 549 4.69e-03 1thg c.69.1.17 34764 1aqlA 532 6.77e-03 2bce c.69.1.1 34627 1l7aA 318 6.83e-03 c.69.1.25 77772 1akn 579 6.88e-03 2bce c.69.1.1 34626 1a88A 275 7.04e-03 1brt c.69.1.12 34707 2bce 579 7.13e-03 2bce c.69.1.1 34625 1r1dA 247 7.28e-03 1j1iA 296 7.63e-03 c.69.1.10 83977 1cleA 534 7.67e-03 1thg c.69.1.17 34771 1llfA 534 7.68e-03 c.69.1.17 78094 1odsA 318 9.97e-03 c.69.1.25 86877 3tgl 269 1.20e-02 3tgl c.69.1.17 34733 1thg 544 1.34e-02 1thg c.69.1.17 34763 1hdeA 310 1.37e-02 1b6g c.69.1.8 34675 1gpl 432 1.59e-02 1gpl b.12.1.2 23645 c.69.1.19 34793 1f6wA 533 1.70e-02 2bce c.69.1.1 34629 1a8s 273 1.70e-02 1brt c.69.1.12 34710 1odtC 318 2.37e-02 c.69.1.25 86885 1jmyA 522 2.52e-02 c.69.1.1 63182 1din 236 2.79e-02 1din c.69.1.9 34682 1gz7A 534 2.86e-02 c.69.1.17 83401 1ehyA 294 2.87e-02 1ehyA c.69.1.11 34693 1cr6A 554 3.02e-02 1cr6B c.108.1.2 43337 c.69.1.11 34687 1nx9A 652 3.23e-02 1m33A 258 3.51e-02 c.69.1.26 78514 1b6g 310 6.09e-02 1b6g c.69.1.8 34661 1ede 310 6.10e-02 1b6g c.69.1.8 34662 1bez 310 6.20e-02 1b6g c.69.1.8 34666 1mtzA 293 6.64e-02 c.69.1.7 79467 1lpbB 449 8.15e-02 1gpl b.12.1.2 23643 c.69.1.19 34791 1gqrA 532 9.32e-02 c.69.1.1 70374 2dfpA 534 9.34e-02 2bce c.69.1.1 34597 1acj 537 9.35e-02 2bce c.69.1.1 34588 1ea5A 537 9.35e-02 2bce c.69.1.1 34592 1eeaA 534 9.35e-02 2bce c.69.1.1 34609 1e66A 543 9.35e-02 c.69.1.1 59291 1a8q 274 9.71e-02 1brt c.69.1.12 34702 1hlgA 371 1.02e-01 1hlgA c.69.1.6 34656 1p0iA 529 1.10e-01 1hkhA 279 1.32e-01 1hplA 449 1.33e-01 1gpl b.12.1.2 23639 c.69.1.19 34787 1ivyA 452 1.94e-01 1ivyA c.69.1.5 34654 1cpy 421 1.98e-01 1ivyA c.69.1.5 34651 1k8qA 377 2.08e-01 c.69.1.6 72177 1a8uA 277 2.32e-01 1brt c.69.1.12 34703 1broA 277 2.35e-01 1brt c.69.1.12 34700 1whsA 255 2.50e-01 1ivyA c.69.1.5 34649 1whtA 256 2.53e-01 1ivyA c.69.1.5 34646 1bcsA 263 2.61e-01 1ivyA c.69.1.5 34647 1ysc 421 2.70e-01 1ivyA c.69.1.5 34652 1imjA 210 3.01e-01 c.69.1.23 71246 1mpxA 615 3.41e-01 b.18.1.13 85041 c.69.1.21 85042 3sc2A 259 3.59e-01 1ivyA c.69.1.5 34648 1ethA 448 3.63e-01 1gpl b.12.1.2 23641 c.69.1.19 34789 1brt 277 5.59e-01 1brt c.69.1.12 34699 1tib 269 8.29e-01 3tgl c.69.1.17 34738 4lipD 320 8.73e-01 1cvl c.69.1.18 34783 1ggvA 231 1.10e+00 1din c.69.1.9 34683 1bu8A 452 1.16e+00 1gpl b.12.1.2 23647 c.69.1.19 34795 1lgyA 269 1.54e+00 3tgl c.69.1.17 34758 1qgeD 222 1.63e+00 1cvl c.69.1.18 34773 1lnsA 763 1.79e+00 a.40.2.1 78101 b.18.1.13 78102 c.69.1.21 78103 1qj4A 257 1.84e+00 1qj4A c.69.1.20 34796 1cqwA 295 1.90e+00 1b6g c.69.1.8 34679 1jeoA 180 2.43e+00 c.80.1.3 66611 1q17A 300 2.46e+00 1q1aA 289 2.47e+00 1bn7A 294 2.56e+00 1bn6A c.69.1.8 34677 1q14A 361 2.61e+00 2madH 373 2.61e+00 2bbkH b.69.2.1 27639 1qtrA 317 2.71e+00 1qtrA c.69.1.7 34660 1rp1 450 2.84e+00 1gpl b.12.1.2 23646 c.69.1.19 34794 1ex9A 285 2.87e+00 1cvl c.69.1.18 34785 1lehA 364 3.52e+00 1bw9A c.2.1.7 30268 c.58.1.1 33916 1cvl 319 3.71e+00 1cvl c.69.1.18 34786 1tahA 318 3.99e+00 1cvl c.69.1.18 34775 1p8jA 471 4.43e+00 b.18.1.20 87946 c.41.1.1 87947 1pzvA 164 4.95e+00 d.20.1.1 88342 1tia 279 4.97e+00 3tgl c.69.1.17 34737 1eqcA 394 4.99e+00 1cz1A c.1.8.3 28811 1tnm 100 5.13e+00 1wit b.1.1.4 21710 1p85C 201 5.52e+00 i.1.1.1 87872 1ehaA 558 5.64e+00 1ehaA b.1.18.2 21859 b.71.1.1 27786 c.1.8.1 28773 1gt6A 269 5.72e+00 c.69.1.17 76342 1bqhG 129 6.05e+00 1cd8 b.1.1.1 19715 1nezG 128 6.11e+00 b.1.1.1 85592 1eh9A 558 6.13e+00 1ehaA b.1.18.2 21858 b.71.1.1 27785 c.1.8.1 28772 1ac5 483 6.71e+00 1ac5 c.69.1.5 34653 1f8uA 583 7.27e+00 2bce c.69.1.1 34620 1egaA 301 7.50e+00 1egaA c.37.1.8 32150 d.52.3.1 38836 1b41A 539 8.09e+00 2bce c.69.1.1 34621 1eqpA 394 8.24e+00 1cz1A c.1.8.3 28812 1e9rA 437 8.66e+00 c.37.1.11 64827 1gl6A 436 8.66e+00 c.37.1.11 70259 1o8nA 167 8.75e+00 c.57.1.1 86665 1oxwA 373 9.13e+00 c.19.1.3 87539 1odfA 290 1.11e+01 1fhe 217 1.19e+01 1b8xA a.45.1.1 17726 c.47.1.5 33020 1o8oA 167 1.20e+01 1j04A 392 1.23e+01 1ffvB 801 1.37e+01 1qj2B d.41.1.1 38591 d.133.1.1 41421 1ehiA 377 1.60e+01 1iow c.30.1.2 31716 d.142.1.1 41484 1oruA 195 1.67e+01 1h0cA 392 1.74e+01 c.67.1.3 83424 1e08A 371 1.76e+01 i.4.1.1 45914 1nekC 129 1.81e+01 f.21.2.2 80431 1m0wA 491 1.83e+01 c.30.1.4 78363 d.142.1.6 78364 1ii8A 195 1.84e+01 1f2tA c.37.1.12 62417 1eavA 162 1.87e+01 c.57.1.1 64877 1qo7A 394 1.88e+01 1qo7A c.69.1.11 34697 1pszA 303 2.04e+01 1toaA c.92.2.2 35600 1mo2A 294 2.14e+01 c.69.1.22 79331 1kezA 300 2.14e+01 c.69.1.22 68546 1cpt 428 2.14e+01 1cpt a.104.1.1 18968 1hfeL 421 2.16e+01 1fehA c.96.1.1 36018 d.58.1.5 39001 1uhvA 500 2.18e+01 1isiA 265 2.19e+01 e.4.1.1 71394 1k8yB 396 2.22e+01 c.79.1.1 72184 1fcjA 322 2.22e+01 1oasA c.79.1.1 35289 1d6sA 322 2.22e+01 1oasA c.79.1.1 35295 1a50B 396 2.23e+01 2tysB c.79.1.1 35280 1beuB 397 2.23e+01 2tysB c.79.1.1 35274 1kfeB 394 2.23e+01 c.79.1.1 77374 1ubsB 397 2.23e+01 2tysB c.79.1.1 35273 1ttqB 397 2.23e+01 2tysB c.79.1.1 35268 2tysB 397 2.23e+01 2tysB c.79.1.1 35272 1qopB 396 2.24e+01 2tysB c.79.1.1 35270 1kfcB 397 2.24e+01 c.79.1.1 77372 1qoqB 396 2.24e+01 2tysB c.79.1.1 35271 1fuyB 396 2.26e+01 2tysB c.79.1.1 35279 1ku0A 388 2.28e+01 c.69.1.18 72994 1nm5C 203 2.41e+01 1ispA 181 2.42e+01 c.69.1.18 76778 1jttA 133 2.47e+01 b.1.1.1 67282 1uwcA 261 2.52e+01 1uswA 260 2.58e+01 1ju2A 536 2.58e+01 c.3.1.2 77169 d.16.1.1 77170 1nct 106 2.61e+01 1wit b.1.1.4 21708 1o8qA 167 2.74e+01 c.57.1.1 86669 1ji3A 388 2.80e+01 c.69.1.18 77115 1jtpA 148 2.80e+01 b.1.1.1 67278 1fs5A 266 2.83e+01 c.35.1.1 65044 2spcA 107 2.84e+01 2spcA a.7.1.1 16311 1jt9A 266 2.86e+01 c.35.1.1 67259 1lc5A 364 2.86e+01 c.67.1.1 73827 1l7rA 574 2.91e+01 b.18.1.13 77793 c.69.1.21 77794 1jtoA 148 2.92e+01 b.1.1.1 67274 1pbv 195 2.95e+01 1pbv a.118.3.1 19179 1bn8A 420 3.14e+01 1pcl b.80.1.1 28022 1regX 122 3.15e+01 1regX d.58.27.1 39406 1ju3A 583 3.17e+01 b.18.1.13 67300 c.69.1.21 67301 2bspA 420 3.27e+01 1pcl b.80.1.1 28023 1ei9A 279 3.35e+01 1ei9A c.69.1.13 34713 1fiuA 286 3.52e+01 1fiuA c.52.1.10 33317 1qllA 121 3.77e+01 1poa a.133.1.2 19556 1nhs 447 3.81e+01 1nhp c.3.1.5 30555 c.3.1.5 30556 d.87.1.1 40199 1nhq 447 3.82e+01 1nhp c.3.1.5 30551 c.3.1.5 30552 d.87.1.1 40197 1npx 447 3.82e+01 1nhp c.3.1.5 30557 c.3.1.5 30558 d.87.1.1 40200 1nhr 447 3.82e+01 1nhp c.3.1.5 30553 c.3.1.5 30554 d.87.1.1 40198 1nhp 447 3.82e+01 1nhp c.3.1.5 30549 c.3.1.5 30550 d.87.1.1 40196 1f8wA 447 3.83e+01 1nhp c.3.1.5 30561 c.3.1.5 30562 d.87.1.1 40202 1vkdA 338 3.85e+01 1vduA 172 3.92e+01 2gacA 151 3.98e+01 1apyA d.153.1.5 42012