# List of top-scoring protein chains for T0195.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1evqA 310 3.31e-29 1jkmA c.69.1.2 34635 1qz3A 310 4.96e-29 1k4yA 534 6.56e-28 c.69.1.1 72069 1orvA 728 7.44e-27 b.70.3.1 87354 c.69.1.24 87355 1mx1A 548 7.96e-27 c.69.1.1 85165 1jjiA 311 1.07e-26 c.69.1.2 66766 1nu6A 728 4.05e-26 1pfqA 731 4.15e-26 b.70.3.1 88061 c.69.1.24 88062 1j2eA 740 4.30e-26 1qe3A 489 6.01e-25 2bce c.69.1.1 34630 1c7iA 489 1.45e-24 1thg c.69.1.1 34632 1c7jA 489 2.42e-24 2bce c.69.1.1 34631 1c2oA 539 6.17e-24 2bce c.69.1.1 34610 1maaA 547 6.63e-24 2bce c.69.1.1 34615 1c2bA 540 6.64e-24 2bce c.69.1.1 34614 1n5rA 543 7.22e-24 c.69.1.1 80037 1ku6A 549 7.22e-24 1n5mA 541 7.27e-24 c.69.1.1 80031 1q84A 580 8.07e-24 1aqlA 532 8.43e-24 2bce c.69.1.1 34627 2bce 579 9.44e-24 2bce c.69.1.1 34625 1akn 579 9.98e-24 2bce c.69.1.1 34626 1f8uA 583 1.01e-23 2bce c.69.1.1 34620 1f6wA 533 1.08e-23 2bce c.69.1.1 34629 1lzlA 323 1.24e-23 c.69.1.2 78306 1b41A 539 1.28e-23 2bce c.69.1.1 34621 1jmyA 522 1.61e-23 c.69.1.1 63182 1a88A 275 5.86e-23 1brt c.69.1.12 34707 1a8s 273 1.55e-22 1brt c.69.1.12 34710 1p0iA 529 2.97e-22 1fj2A 232 5.22e-22 1auoA c.69.1.14 34720 1jjfA 268 8.09e-22 c.69.1.2 66765 1dqyA 283 1.03e-21 1dqyA c.69.1.3 34640 1dqzA 280 2.49e-21 1dqyA c.69.1.3 34638 1gqrA 532 2.69e-21 c.69.1.1 70374 2dfpA 534 2.83e-21 2bce c.69.1.1 34597 1acj 537 2.86e-21 2bce c.69.1.1 34588 1ea5A 537 3.00e-21 2bce c.69.1.1 34592 1e66A 543 3.01e-21 c.69.1.1 59291 1eeaA 534 3.01e-21 2bce c.69.1.1 34609 1thg 544 9.02e-21 1thg c.69.1.17 34763 1mtzA 293 1.78e-20 c.69.1.7 79467 1jt2A 268 1.89e-20 c.69.1.2 71858 1jkmA 358 2.09e-20 1jkmA c.69.1.2 34633 1jkmB 361 2.85e-20 1jkmA c.69.1.2 34634 1j1iA 296 4.30e-20 c.69.1.10 83977 1f0nA 285 4.60e-20 1dqyA c.69.1.3 34636 1broA 277 4.80e-20 1brt c.69.1.12 34700 1cr6A 554 4.87e-20 1cr6B c.108.1.2 43337 c.69.1.11 34687 1h2wA 710 4.93e-20 b.69.7.1 76596 c.69.1.4 76597 1e5tA 710 5.09e-20 1qfmA b.69.7.1 27676 c.69.1.4 34644 1vj5A 555 5.88e-20 1a8uA 277 7.37e-20 1brt c.69.1.12 34703 1hkhA 279 7.41e-20 1c4xA 285 9.66e-20 1c4xA c.69.1.10 34684 1dx4A 585 1.07e-19 2bce c.69.1.1 34622 1gz7A 534 1.63e-19 c.69.1.17 83401 1auoA 218 2.44e-19 1auoA c.69.1.14 34716 1l7aA 318 2.72e-19 c.69.1.25 77772 1h2xA 710 3.12e-19 b.69.7.1 76598 c.69.1.4 76599 1brt 277 3.39e-19 1brt c.69.1.12 34699 1a8q 274 6.19e-19 1brt c.69.1.12 34702 1hlgA 371 7.71e-19 1hlgA c.69.1.6 34656 1odsA 318 8.81e-19 c.69.1.25 86877 1o6gA 710 9.41e-19 b.69.7.1 81087 c.69.1.4 81088 1iupA 282 1.05e-18 c.69.1.10 76815 1e8nA 710 1.10e-18 1qfmA b.69.7.1 27675 c.69.1.4 34643 1q0rA 298 1.32e-18 1o6fA 710 1.67e-18 b.69.7.1 81085 c.69.1.4 81086 1cleA 534 2.15e-18 1thg c.69.1.17 34771 1llfA 534 2.16e-18 c.69.1.17 78094 1odtC 318 2.22e-18 c.69.1.25 86885 1crl 534 4.29e-18 1thg c.69.1.17 34765 1lpp 549 4.56e-18 1thg c.69.1.17 34764 1k8qA 377 4.92e-18 c.69.1.6 72177 1azwA 313 1.64e-17 1qtrA c.69.1.7 34658 1qtrA 317 2.34e-17 1qtrA c.69.1.7 34660 1r88A 280 7.65e-17 1r1dA 247 3.66e-16 1ehyA 294 6.27e-16 1ehyA c.69.1.11 34693 1m33A 258 7.70e-16 c.69.1.26 78514 1ufoA 238 2.49e-15 1jfrA 262 6.87e-15 1jfrA c.69.1.16 34724 1din 236 7.63e-14 1din c.69.1.9 34682 1gkkA 297 1.76e-13 c.69.1.2 65248 1bn7A 294 3.04e-13 1bn6A c.69.1.8 34677 1cqwA 295 3.30e-13 1b6g c.69.1.8 34679 1gklA 297 1.38e-12 c.69.1.2 65250 1ede 310 1.39e-11 1b6g c.69.1.8 34662 1b6g 310 1.40e-11 1b6g c.69.1.8 34661 1hdeA 310 1.41e-11 1b6g c.69.1.8 34675 1bez 310 1.43e-11 1b6g c.69.1.8 34666 1imjA 210 1.79e-11 c.69.1.23 71246 1ggvA 231 3.51e-11 1din c.69.1.9 34683 1l7rA 574 3.82e-10 b.18.1.13 77793 c.69.1.21 77794 1ju3A 583 5.54e-10 b.18.1.13 67300 c.69.1.21 67301 1mpxA 615 1.38e-09 b.18.1.13 85041 c.69.1.21 85042 4lipD 320 5.45e-09 1cvl c.69.1.18 34783 1l7qA 574 5.77e-09 b.18.1.13 77791 c.69.1.21 77792 1vkhA 273 6.85e-09 1ysc 421 1.21e-08 1ivyA c.69.1.5 34652 1cpy 421 1.60e-08 1ivyA c.69.1.5 34651 1ivyA 452 1.72e-08 1ivyA c.69.1.5 34654 1qlwA 328 4.24e-08 1qlwA c.69.1.15 34722 1qlwB 328 4.63e-08 1qlwA c.69.1.15 34723 1cv2A 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