# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jjiA 311 1.09e-17 c.69.1.2 66766 1orvA 728 1.14e-17 b.70.3.1 87354 c.69.1.24 87355 1lzlA 323 1.97e-16 c.69.1.2 78306 1dqzA 280 4.57e-16 1dqyA c.69.1.3 34638 1f0nA 285 6.67e-16 1dqyA c.69.1.3 34636 1jjfA 268 7.90e-16 c.69.1.2 66765 1qe3A 489 1.75e-15 2bce c.69.1.1 34630 1a88A 275 2.03e-15 1brt c.69.1.12 34707 1j1iA 296 9.21e-15 c.69.1.10 83977 1c4xA 285 1.25e-14 1c4xA c.69.1.10 34684 1fj2A 232 1.31e-14 1auoA c.69.1.14 34720 1mtzA 293 1.34e-14 c.69.1.7 79467 1a8s 273 1.92e-14 1brt c.69.1.12 34710 1jkmB 361 2.92e-14 1jkmA c.69.1.2 34634 1p0iA 529 3.93e-14 2bce 581 4.79e-14 2bce c.69.1.1 34625 1a8q 274 4.80e-14 1brt c.69.1.12 34702 1hlgA 371 7.29e-14 1hlgA c.69.1.6 34656 1hkhA 279 9.10e-14 1r88A 280 1.02e-13 1iupA 282 1.41e-13 c.69.1.10 76815 1broA 277 1.90e-13 1brt c.69.1.12 34700 1ea5A 537 3.35e-13 2bce c.69.1.1 34592 1brt 277 4.25e-13 1brt c.69.1.12 34699 1q0rA 298 4.62e-13 1auoA 218 5.14e-13 1auoA c.69.1.14 34716 1thg 544 5.97e-13 1thg c.69.1.17 34763 1r1dA 247 8.19e-13 1l7aA 318 1.09e-12 c.69.1.25 77772 1ek1A 554 1.30e-12 1cr6B c.108.1.2 43335 c.69.1.11 34685 1qtrA 317 2.54e-12 1qtrA c.69.1.7 34660 1cleA 534 3.67e-12 1thg c.69.1.17 34771 1azwA 313 3.97e-12 1qtrA c.69.1.7 34658 1ufoA 238 4.48e-12 1qfmA 710 5.03e-12 1qfmA b.69.7.1 27673 c.69.1.4 34641 1llfA 534 5.10e-12 c.69.1.17 78094 1din 236 5.91e-12 1din c.69.1.9 34682 1h2wA 710 9.37e-12 b.69.7.1 76596 c.69.1.4 76597 1ehyA 294 2.12e-11 1ehyA c.69.1.11 34693 1jfrA 262 2.80e-11 1jfrA c.69.1.16 34724 1m33A 258 3.34e-11 c.69.1.26 78514 1ede 310 2.34e-10 1b6g c.69.1.8 34662 1bn7A 294 2.59e-10 1bn6A c.69.1.8 34677 1b6g 310 3.06e-10 1b6g c.69.1.8 34661 1gklA 297 5.08e-10 c.69.1.2 65250 1imjA 210 9.30e-10 c.69.1.23 71246 1ju3A 583 3.39e-09 b.18.1.13 67300 c.69.1.21 67301 1cv2A 296 4.04e-09 1bn6A c.69.1.8 34680 1mj5A 302 4.60e-09 1vkhA 273 5.72e-09 1mpxA 615 1.24e-08 b.18.1.13 85041 c.69.1.21 85042 1qlwA 328 1.45e-08 1qlwA c.69.1.15 34722 1thtA 305 2.32e-07 1thtA c.69.1.13 34711 1qj4A 257 4.62e-07 1qj4A c.69.1.20 34796 1ivyA 452 5.42e-07 1ivyA c.69.1.5 34654 1mnaA 298 6.37e-07 c.69.1.22 79322 1yasA 257 6.80e-07 1qj4A c.69.1.20 34801 1cvl 319 6.86e-07 1cvl c.69.1.18 34786 1ac5 483 7.76e-07 1ac5 c.69.1.5 34653 1gpl 432 2.56e-06 1gpl b.12.1.2 23645 c.69.1.19 34793 1bu8A 452 8.92e-06 1gpl b.12.1.2 23647 c.69.1.19 34795 1qo7A 394 1.27e-05 1qo7A c.69.1.11 34697 1uxoA 192 1.01e-04 1ispA 181 1.65e-04 c.69.1.18 76778 1jmkC 230 3.72e-04 c.69.1.22 71747 1i6wA 181 4.59e-04 1i6wA c.69.1.18 61859 1ku0A 388 5.60e-04 c.69.1.18 72994 1tca 317 6.47e-04 1tca c.69.1.17 34726 1tia 279 1.65e-03 3tgl c.69.1.17 34737 1tib 269 1.69e-03 3tgl c.69.1.17 34738 3tgl 269 2.88e-03 3tgl c.69.1.17 34733 1lnsA 763 4.69e-03 a.40.2.1 78101 b.18.1.13 78102 c.69.1.21 78103 1ei9A 279 5.22e-03 1ei9A c.69.1.13 34713 1whsA 255 6.51e-03 1ivyA c.69.1.5 34649 1whtA 256 9.01e-03 1ivyA c.69.1.5 34646 1gt6A 269 9.86e-03 c.69.1.17 76342 1g66A 207 1.03e-02 1bs9 c.23.9.1 31329 1gz6A 319 9.30e-02 c.2.1.2 76410 1ffa 214 9.50e-02 1cex c.23.9.1 31289 1cex 214 1.65e-01 1cex c.23.9.1 31285 1uwcA 261 2.34e-01 1pbe 394 2.69e-01 1pbe c.3.1.2 30338 d.16.1.2 37869 1cjcA 460 2.90e-01 1cjcA c.3.1.1 30319 c.4.1.1 30604 1k0iA 394 3.15e-01 c.3.1.2 67942 d.16.1.2 67943 1qf5A 431 3.88e-01 1adeA c.37.1.10 32212 1oxwA 373 4.10e-01 c.19.1.3 87539 1q1rA 431 6.18e-01 1h1nA 305 6.61e-01 c.1.8.3 70855 1q8fA 313 6.62e-01 1guzA 310 7.49e-01 c.2.1.5 65586 d.162.1.1 65587 1fcdA 401 8.06e-01 1fcdA c.3.1.5 30593 c.3.1.5 30594 d.87.1.1 40218 1fo4A 1332 8.16e-01 a.56.1.1 17910 d.15.4.2 37695 d.41.1.1 38586 d.87.2.1 40227 d.133.1.1 41416 d.145.1.3 41758 1b25A 619 1.18e+00 1b25A a.110.1.1 19044 d.152.1.1 41796 1lqtA 456 1.25e+00 c.3.1.1 74198 c.4.1.1 74199 1gal 583 1.41e+00 1gpeA c.3.1.2 30386 d.16.1.1 37950 1rhcA 330 1.42e+00 7a3hA 303 1.47e+00 7a3hA c.1.8.3 28817 3cox 507 1.49e+00 1b8sA c.3.1.2 30332 d.16.1.1 37863 1f0yA 302 1.55e+00 2hdhA a.100.1.3 18793 c.2.1.6 30197 1f8gA 384 1.59e+00 1sayA c.2.1.4 59695 c.23.12.2 59696 1m22A 503 1.61e+00 c.117.1.1 78464 1jffA 451 1.88e+00 c.32.1.1 62932 d.79.2.1 62933 1fohA 664 2.13e+00 1fohA c.3.1.2 30381 c.47.1.10 33078 d.16.1.2 37900 1f8rA 498 2.32e+00 1f8rA c.3.1.2 30410 d.16.1.5 37974 1pn0A 665 2.47e+00 1v93A 296 2.49e+00 1un8A 552 2.59e+00 1ojaA 520 2.76e+00 1jnrA 643 2.77e+00 a.7.3.1 66966 c.3.1.4 66967 d.168.1.1 66968 1umdB 324 2.83e+00 1gegA 256 2.98e+00 1ybvA c.2.1.2 29888 1n4wA 504 2.99e+00 1ju2A 536 3.03e+00 c.3.1.2 77169 d.16.1.1 77170 1t2dA 322 3.32e+00 1s3eA 520 3.40e+00 1mxtA 504 3.57e+00 c.3.1.2 79671 d.16.1.1 79672 1rvgA 305 3.68e+00 1aa6 715 3.70e+00 2napA b.52.2.2 26916 c.81.1.1 35324 1fecA 490 3.72e+00 3grs c.3.1.5 30489 c.3.1.5 30490 d.87.1.1 40176 1eqjA 511 3.90e+00 1ejjA c.105.1.1 59495 c.76.1.3 59496 1pea 385 4.04e+00 1pea c.93.1.1 35662 1o98A 511 4.16e+00 c.105.1.1 86684 c.76.1.3 86685 1b4vA 504 4.19e+00 1b8sA c.3.1.2 30334 d.16.1.1 37865 1reoA 486 4.19e+00 1gq6A 313 4.34e+00 c.42.1.1 70341 1nhs 447 4.43e+00 1nhp c.3.1.5 30555 c.3.1.5 30556 d.87.1.1 40199 1k9sA 237 4.50e+00 c.56.2.1 68359 1m7jA 484 4.54e+00 b.92.1.6 78732 b.92.1.6 78733 c.1.9.11 78734 1gesA 450 4.55e+00 3grs c.3.1.5 30473 c.3.1.5 30474 d.87.1.1 40168 1ajsA 412 4.65e+00 1ajsA c.67.1.1 34276 1qlaA 656 4.87e+00 1qlaA a.7.3.1 16328 c.3.1.4 30427 d.168.1.1 42310 1pymA 295 5.21e+00 1pymA c.1.12.7 29308 1rk6A 496 5.49e+00 1a9xA 1058 5.61e+00 a.92.1.1 18550 c.24.1.1 31479 c.30.1.1 31657 c.30.1.1 31658 d.142.1.2 41502 d.142.1.2 41503 2masA 314 5.74e+00 2masA c.70.1.1 34810 1h5qA 265 5.79e+00 1cydA c.2.1.2 60643 1ps9A 671 5.94e+00 1rkxA 357 5.97e+00 1itcA 516 6.04e+00 b.3.1.1 83705 c.1.8.1 83706 1fcqA 350 6.28e+00 c.1.8.9 65006 1l7dA 384 6.61e+00 c.2.1.4 77774 c.23.12.2 77775 1f0kA 364 6.68e+00 1f0kA c.87.1.2 35465 1mo9A 523 6.90e+00 c.3.1.5 79341 c.3.1.5 79342 d.87.1.1 79343 1qwkA 317 7.12e+00 1gy8A 397 7.17e+00 c.2.1.2 83376 1kicA 339 7.23e+00 c.70.1.1 72510 1ldg 316 7.26e+00 1ceqA c.2.1.5 30165 d.162.1.1 42132 1gpeA 587 7.29e+00 1gpeA c.3.1.2 30387 d.16.1.1 37951 1zpdA 568 7.51e+00 1zpdA c.31.1.3 31741 c.36.1.5 31785 c.36.1.9 31786 1udc 338 7.59e+00 1xel c.2.1.2 29785 1nhp 447 7.65e+00 1nhp c.3.1.5 30549 c.3.1.5 30550 d.87.1.1 40196 1hdr 244 7.88e+00 1dhr c.2.1.2 29837 1xel 338 8.08e+00 1xel c.2.1.2 29786 1s5pA 235 8.68e+00 1hdcA 253 8.71e+00 1e6wA c.2.1.2 29862 1eyeA 280 8.72e+00 1aj2 c.1.21.1 29672 1itxA 419 9.07e+00 c.1.8.5 71425 d.26.3.1 71426 1ng4A 390 9.11e+00 c.3.1.2 85666 d.16.1.3 85667 1kdgA 546 9.14e+00 c.3.1.2 77337 d.16.1.1 77338 1k0fA 277 9.42e+00 c.92.2.2 71974 3ladA 476 9.79e+00 1lvl c.3.1.5 30573 c.3.1.5 30574 d.87.1.1 40208 1jbwA 428 9.81e+00 c.59.1.2 62860 c.72.2.2 62861 1o0uA 429 1.02e+01 c.118.1.1 80743 1c0pA 363 1.05e+01 1an9A c.4.1.2 30647 d.16.1.3 37934 1m1zA 513 1.05e+01 c.26.2.1 78457 d.153.1.1 78458 1bqcA 302 1.05e+01 1bqcA c.1.8.3 28831 1q6cA 495 1.09e+01 1qlmA 316 1.09e+01 1qlmA d.147.1.1 41765 1iy8A 267 1.09e+01 c.2.1.2 83774 3grs 478 1.12e+01 3grs c.3.1.5 30441 c.3.1.5 30442 d.87.1.1 40152 1chd 203 1.12e+01 1chd c.40.1.1 32478 1n8jA 186 1.14e+01 c.47.1.10 85401 1luaA 287 1.14e+01 c.2.1.7 78216 c.58.1.4 78217 1vh7A 265 1.16e+01 1b5qA 472 1.17e+01 1b37B c.3.1.2 30404 d.16.1.5 37968 1uayA 242 1.21e+01 c.2.1.2 88390 1vhwA 253 1.22e+01 1dhr 241 1.23e+01 1dhr c.2.1.2 29832 2cmd 312 1.26e+01 2cmd c.2.1.5 30135 d.162.1.1 42102 1trkA 680 1.32e+01 1trkA c.36.1.6 31804 c.36.1.10 31803 c.48.1.1 33090 1nbwB 117 1.33e+01 c.51.3.2 80396 1bd0A 388 1.36e+01 1bd0A b.49.2.2 26480 c.1.6.1 28642 1dseA 292 1.37e+01 1ryc a.93.1.1 59130 1gpuA 680 1.41e+01 c.36.1.6 65455 c.36.1.10 65454 c.48.1.1 65456 1e6pA 499 1.41e+01 1e15A b.72.2.1 59314 c.1.8.5 59315 d.26.3.1 59316 1i24A 404 1.42e+01 c.2.1.2 83663 1rpnA 335 1.42e+01 1r3sA 367 1.42e+01 1q1aA 289 1.43e+01 1fds 327 1.45e+01 1fds c.2.1.2 29838 1goiA 499 1.47e+01 b.72.2.1 65413 c.1.8.5 65414 d.26.3.1 65415 1jtvA 327 1.49e+01 c.2.1.2 84230 1gx1A 160 1.49e+01 d.79.5.1 70675 1llp 343 1.50e+01 1arv a.93.1.1 18578 1b5pA 385 1.52e+01 1qrrA 394 1.55e+01 1qrrA c.2.1.2 29824 1poiA 317 1.55e+01 1poiA c.63.1.2 34153 1qmvA 197 1.60e+01 1qq2A c.47.1.10 33066 1jdrA 294 1.60e+01 1ryc a.93.1.1 62908 1sftA 388 1.62e+01 1bd0A b.49.2.2 26482 c.1.6.1 28644 1toaA 313 1.62e+01 1toaA c.92.2.2 35598 1dqsA 393 1.63e+01 1dqsA e.22.1.1 43347 1n57A 291 1.69e+01 c.23.16.7 85328 1atzA 189 1.72e+01 1atzA c.62.1.1 34132 1euaA 213 1.74e+01 1fwrA c.1.10.1 29155 1hl9A 449 1.76e+01 1e9lA 377 1.77e+01 1e9lA c.1.8.5 59395 d.26.3.1 59396 1fmcA 255 1.82e+01 1cydA c.2.1.2 29856 1ecpA 238 1.83e+01 1ecpA c.56.2.1 33775 1fsz 372 1.84e+01 1fsz c.32.1.1 31750 d.79.2.1 39802 1ituA 369 1.85e+01 c.1.9.7 71423 1gdeA 389 1.86e+01 c.67.1.1 60456 1ek6A 348 1.87e+01 1xel c.2.1.2 29800 1ja1A 622 1.87e+01 1amoA b.43.4.1 62803 c.23.5.2 62804 c.25.1.4 62805 1yacA 208 1.90e+01 1yacA c.33.1.2 31757 1r6dA 337 1.94e+01 1fgs 428 1.96e+01 1fgs c.59.1.2 33959 c.72.2.2 34962 1dv1A 449 1.97e+01 1bncA b.84.2.1 28234 c.30.1.1 31641 d.142.1.2 41486 1e3aB 560 1.99e+01 1ajqB 1ur5A 309 2.00e+01 1bdb 277 2.01e+01 1bdb c.2.1.2 29874 1oy3D 282 2.01e+01 d.211.1.1 87554 1ez0A 510 2.06e+01 1eyyA c.82.1.1 35385 1gpmA 525 2.11e+01 1gpmA c.23.16.1 31405 c.26.2.1 31608 d.52.2.1 38826 1p49A 562 2.11e+01 1bxkA 355 2.12e+01 1bxkA c.2.1.2 29803 1chuA 540 2.12e+01 1chuA a.7.3.1 16325 c.3.1.4 30424 d.168.1.1 42307 1hkkA 364 2.15e+01 1o4sA 389 2.15e+01 c.67.1.1 86620 1ddgA 374 2.15e+01 1amoA b.43.4.1 25671 c.25.1.4 31559 1b1cA 181 2.19e+01 1amoA c.23.5.2 31212 1thfD 253 2.26e+01 1thfD c.1.2.1 28535 1lqaA 346 2.30e+01 c.1.7.1 84674 1byb 495 2.31e+01 1byb c.1.8.1 28790 1k2yX 463 2.31e+01 c.84.1.1 68063 c.84.1.1 68064 c.84.1.1 68065 d.129.2.1 68066 1elqA 390 2.32e+01 1elqA c.67.1.3 34436 1ooyA 481 2.34e+01 1qgdA 662 2.34e+01 c.36.1.6 88367 c.36.1.10 88368 c.48.1.1 88369 1evyA 366 2.35e+01 1evyA a.100.1.6 18811 c.2.1.6 30215 1e5pA 151 2.37e+01 1bj7 b.60.1.1 59272 1bfd 528 2.39e+01 1bfd c.31.1.3 31745 c.36.1.5 31801 c.36.1.9 31802 1bjwA 382 2.39e+01 1bjwA c.67.1.1 34349 1f4pA 147 2.42e+01 5nul c.23.5.1 59651 1h61A 364 2.44e+01 1oyc c.1.4.1 60657 1f6dA 376 2.44e+01 1f6dA c.87.1.3 35467 1ei6A 406 2.45e+01 1g3qA 237 2.46e+01 1hyqA c.37.1.10 60237 1k4mA 213 2.50e+01 c.26.1.3 77258 1vjoA 393 2.50e+01 1inlA 296 2.52e+01 c.66.1.17 66220 1orrA 347 2.57e+01 1uroA 367 2.59e+01 1uroA c.1.22.1 29675 1nnwA 252 2.60e+01 d.159.1.5 80674 1nmoA 247 2.64e+01 1fzqA 181 2.65e+01 1hurA c.37.1.8 32060 1okgA 373 2.71e+01 1qisA 396 2.72e+01 1ajsA c.67.1.1 34284 1eluA 390 2.73e+01 1elqA c.67.1.3 34434 1fnsA 196 2.75e+01 1auq c.62.1.1 34136 1iirA 415 2.77e+01 1iirA c.87.1.5 62453 1shuX 182 2.77e+01 1ceo 343 2.78e+01 1ceo c.1.8.3 28808 1oi7A 288 2.78e+01 c.2.1.8 87049 c.23.4.1 87050 1rreA 200 2.82e+01 1gvoA 364 2.83e+01 c.1.4.1 76357 1pzgA 331 2.90e+01 1vypX 364 2.90e+01 1gk9B 557 2.91e+01 1kevA 351 3.03e+01 1pedA b.35.1.2 24749 c.2.1.1 29765 1pj5A 830 3.09e+01 1tml 286 3.12e+01 1tml c.6.1.1 30656 1aj2 282 3.14e+01 1aj2 c.1.21.1 29665 1ukz 203 3.17e+01 1zin c.37.1.1 31840 1ivnA 190 3.18e+01 c.23.10.5 83719 1p3dA 475 3.23e+01 c.5.1.1 87728 c.59.1.1 87729 c.72.2.1 87730 1mumA 295 3.37e+01 c.1.12.7 85108 1fg7A 356 3.44e+01 1gewA c.67.1.1 59819 1xjo 284 3.54e+01 1xjo c.56.5.4 33843 1ars 396 3.67e+01 1ajsA c.67.1.1 34287 1jg8A 347 3.68e+01 1jg8A c.67.1.1 62946 1bg6 359 3.70e+01 1bg6 a.100.1.5 18810 c.2.1.6 30214 1p5dX 463 3.70e+01 1a2zA 220 3.70e+01 1a2zA c.56.4.1 33794 1f1uA 323 3.75e+01 d.32.1.3 83200 d.32.1.3 83201 1ockA 412 3.89e+01 c.117.1.1 86802 1fsu 492 3.90e+01 1auk c.76.1.2 35032 1ijbA 202 3.95e+01 c.62.1.1 71229