# List of top-scoring protein chains for T0282.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gq6A 313 2.03e-45 c.42.1.1 70341 2cevA 299 4.83e-42 1d3vA c.42.1.1 32576 1pq3A 306 5.09e-40 c.42.1.1 -7309 1hqxA 323 3.15e-39 1d3vA c.42.1.1 61161 1d3vA 323 3.27e-39 1d3vA c.42.1.1 32559 2rlaA 323 3.50e-39 1d3vA c.42.1.1 32573 3rlaA 323 8.55e-39 1d3vA c.42.1.1 32564 1p8sA 314 8.66e-39 c.42.1.1 87979 1hqgA 323 1.08e-38 1d3vA c.42.1.1 61136 1p8qA 314 1.19e-38 c.42.1.1 87974 1p8mA 314 1.22e-38 c.42.1.1 87962 1p8oA 314 1.32e-38 c.42.1.1 87968 1p8pA 314 1.39e-38 c.42.1.1 87971 1p8rA 308 3.11e-38 c.42.1.1 87977 1p8nA 314 3.28e-38 c.42.1.1 87965 1gy8A 397 7.49e-01 c.2.1.2 83376 1l1jA 239 1.02e+00 b.47.1.1 84516 1wit 93 1.10e+00 1wit b.1.1.4 21714 1jscA 630 2.44e+00 c.31.1.3 67224 c.36.1.5 67225 c.36.1.9 67226 1n0hA 677 2.64e+00 c.31.1.3 79734 c.36.1.5 79735 c.36.1.9 79736 1mjgM 729 2.71e+00 e.26.1.3 79204 1oaoC 729 2.71e+00 e.26.1.3 86746 1g99A 408 3.69e+00 1g99A c.55.1.2 33457 c.55.1.2 33458 1s16A 390 4.25e+00 d.14.1.3 -9038 d.122.1.2 -10971 1j0dA 341 4.46e+00 c.79.1.1 83902 2fcr 173 4.47e+00 1rcf c.23.5.1 31151 1ie7C 570 4.65e+00 1ubpC b.92.1.1 62315 c.1.9.2 62316 1miqA 375 5.06e+00 b.50.1.2 79151 1qs8A 329 5.62e+00 1smrA b.50.1.2 26887 1j0eA 341 5.77e+00 c.79.1.1 83906 1f2dA 341 5.88e+00 1f2dA c.79.1.1 35298 4ubpC 570 7.09e+00 1ubpC b.92.1.1 28431 c.1.9.2 29053 1kzhA 555 7.18e+00 c.89.1.1 73361 1tk9A 188 7.25e+00 1bzyA 217 8.78e+00 1qk3A c.61.1.1 34071 1bwr 233 9.06e+00 1wab c.23.10.3 31344 2tmgA 415 9.64e+00 1hwyA c.2.1.7 30238 c.58.1.1 33886 1bgp 309 9.69e+00 1bgp a.93.1.1 18690 1b26A 416 1.03e+01 1hwyA c.2.1.7 30232 c.58.1.1 33880 1b3bA 415 1.09e+01 1hwyA c.2.1.7 30244 c.58.1.1 33892 1pv9A 348 1.10e+01 c.55.2.1 -7610 d.127.1.1 -11000 1qc7A 101 1.11e+01 1qc7A a.118.14.1 18456 1izzA 283 1.13e+01 c.23.16.2 -6518 1mwmA 320 1.15e+01 c.55.1.1 79580 c.55.1.1 79581 1c3rA 375 1.16e+01 1c3pA c.42.1.2 32607 1c3pA 375 1.16e+01 1c3pA c.42.1.2 32606 1vdc 333 1.23e+01 1trb c.3.1.5 30545 c.3.1.5 30546 1rscA 472 1.34e+01 1burA c.1.14.1 29381 d.58.9.1 39287 1d6nA 214 1.36e+01 1qk3A c.61.1.1 34077 1rblA 467 1.41e+01 1burA c.1.14.1 29380 d.58.9.1 39286 1tk1A 260 1.42e+01 1lkvX 232 1.43e+01 a.118.14.1 73980 1js8A 394 1.52e+01 a.86.1.1 67219 b.112.1.1 67220 1j8rA 196 1.59e+01 1j8rA b.2.3.3 62745 1tklA 326 1.64e+01 1fxwF 229 1.77e+01 c.23.10.3 65058 1uxlA 153 1.89e+01 b.1.8.1 -2816 1o6dA 163 1.90e+01 c.116.1.3 -6689 1bwvA 493 1.90e+01 1burA c.1.14.1 29372 d.58.9.1 39278 1bn8A 420 1.92e+01 1pcl b.80.1.1 28022 1bwq 233 1.96e+01 1wab c.23.10.3 31343 1uslA 170 1.97e+01 c.121.1.1 -6682 1mqsA 671 1.99e+01 e.25.1.1 79414 1wab 232 2.06e+01 1wab c.23.10.3 31341 2bspA 420 2.08e+01 1pcl b.80.1.1 28023 1es9A 232 2.21e+01 1wab c.23.10.3 31340 1bwp 233 2.24e+01 1wab c.23.10.3 31342 1pwhA 327 2.24e+01 c.79.1.1 -8524 1pv5A 264 2.25e+01 unknown_sccs -10182 1k8qA 377 2.38e+01 c.69.1.6 72177 1kcbA 340 2.40e+01 b.6.1.3 -2950 b.6.1.3 -2951 1funA 153 2.42e+01 1mfmA b.1.8.1 22259 1n19A 154 2.48e+01 b.1.8.1 79795 1sosA 154 2.49e+01 1mfmA b.1.8.1 22249 1n18A 154 2.49e+01 b.1.8.1 79785 1l3nA 153 2.49e+01 b.1.8.1 73549 1ptzA 153 2.50e+01 b.1.8.1 -2803 1rxwA 336 2.55e+01 a.60.7.1 -1041 c.120.1.2 -6680 1c7qA 445 2.57e+01 2pgi c.80.1.2 35307 1h6uA 308 2.57e+01 b.1.18.15 65688 c.10.2.1 65689 1mjfA 281 2.63e+01 c.66.1.17 79198 1o0uA 429 2.67e+01 c.118.1.1 80743 1rw4A 272 2.90e+01 c.37.1.10 -7116 1g72A 573 3.02e+01 4aahA b.70.1.1 27680 1pl3A 186 3.06e+01 b.1.9.1 88158 1g20E 289 3.08e+01 1cp2A c.37.1.10 32247 4aahA 571 3.09e+01 4aahA b.70.1.1 27678 1dswA 153 3.17e+01 1mfmA b.1.8.1 22271 1qq9A 284 3.21e+01 1xjo c.56.5.4 33841 1hsoA 374 3.45e+01 2ohxA b.35.1.2 24731 c.2.1.1 29747 1j2rA 199 3.47e+01 unknown_sccs -6799 1vj3A 205 3.50e+01 c.71.1.1 -8370 1dyr 206 3.51e+01 1aoeA c.71.1.1 34916 1o6zA 303 3.52e+01 c.2.1.5 81107 d.162.1.1 81108 1mfmA 153 3.55e+01 1mfmA b.1.8.1 22246 4xiaA 393 3.57e+01 4xis c.1.15.3 29439 1j32A 388 3.60e+01 c.67.1.1 77067 1aow 309 3.62e+01 1avc a.65.1.1 18152 1s1iW 112 3.66e+01 1jt2A 268 3.68e+01 c.69.1.2 71858 1kmcA 303 3.68e+01 c.17.1.1 68690 1tovA 98 3.73e+01 1aru 344 3.73e+01 1arv a.93.1.1 18589 1odgA 134 3.74e+01 c.52.1.15 86849 1f3mC 297 3.74e+01 1hcl d.144.1.7 41677 1vsrA 136 3.76e+01 1vsrA c.52.1.15 33332 9gafA 295 3.80e+01 1apyA d.153.1.5 42008 1lykA 343 3.84e+01 a.93.1.1 74346 1f1jA 305 3.85e+01 1pauA c.17.1.1 59596 1r18A 227 3.85e+01 c.66.1.7 -8092 1ub0A 258 3.86e+01 c.72.1.2 88394 1p4kA 295 3.86e+01 d.153.1.5 87772 1h3jA 342 3.88e+01 a.93.1.1 83469 1xlaA 394 3.89e+01 4xis c.1.15.3 29445 1kggA 258 3.90e+01 1btl e.3.1.1 42715 1nksA 194 3.92e+01 1nksA c.37.1.1 31886 1cw0A 155 3.92e+01 1vsrA c.52.1.15 33333 1ujuA 111 3.93e+01 b.36.1.1 -3773 1nriA 306 3.97e+01 c.80.1.3 86123 1ann 318 3.97e+01 1avc a.65.1.1 18151 1i4aA 318 3.98e+01 1avc a.65.1.1 61681