# List of top-scoring protein chains for t04-100-30-near-backbone-11 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gq6A 313 9.70e-23 c.42.1.1 70341 1d3vA 323 8.05e-21 1d3vA c.42.1.1 32559 1mnaA 298 5.43e-01 c.69.1.22 79322 1iyxA 432 6.99e-01 c.1.11.1 83815 d.54.1.1 83816 1l4uA 176 1.20e+00 c.37.1.2 73568 3rabA 169 1.28e+00 1ctqA c.37.1.8 32018 1mwmA 320 1.70e+00 c.55.1.1 79580 c.55.1.1 79581 1e3jA 352 1.71e+00 1e3jA b.35.1.2 24765 c.2.1.1 29781 1jvbA 347 1.83e+00 b.35.1.2 77181 c.2.1.1 77182 1i7qB 193 1.86e+00 1qdlB c.23.16.1 61902 1q7zA 566 2.03e+00 c.1.21.2 -5638 c.1.26.1 -5666 1ceo 343 2.11e+00 1ceo c.1.8.3 28808 1dbqA 289 2.14e+00 1qpzA c.93.1.1 35666 1i2aA 219 2.22e+00 e.24.1.1 -12012 1ea5A 537 2.23e+00 2bce c.69.1.1 34592 1sjdA 368 2.26e+00 1ispA 181 2.28e+00 c.69.1.18 76778 1rxwA 336 2.35e+00 a.60.7.1 -1041 c.120.1.2 -6680 1i6wA 181 2.38e+00 1i6wA c.69.1.18 61859 1pwhA 327 2.38e+00 c.79.1.1 -8524 1vj0A 380 2.52e+00 b.35.1.2 -3697 c.2.1.1 -5721 1eceA 358 2.73e+00 1eceA c.1.8.3 28813 1ig3A 263 2.88e+00 1ig3A b.82.6.1 62358 c.100.1.1 62359 1i24A 404 2.98e+00 c.2.1.2 83663 1pjqA 457 4.01e+00 c.2.1.11 -5904 c.90.1.1 -8611 e.37.1.1 -12004 1i1qB 192 4.01e+00 1qdlB c.23.16.1 61544 1o0uA 429 4.03e+00 c.118.1.1 80743 1oi7A 288 4.03e+00 c.2.1.8 87049 c.23.4.1 87050 1hzdA 272 4.25e+00 c.14.1.3 65969 1pbtA 244 4.35e+00 unknown_sccs -6866 1h5qA 265 4.40e+00 1cydA c.2.1.2 60643 1m1nA 491 4.59e+00 c.92.2.3 78417 1vjnA 220 4.66e+00 unknown_sccs -11458 1o5kA 306 4.70e+00 c.1.10.1 -5482 1g6oA 330 4.71e+00 1g6oA c.37.1.11 32430 1mw9X 592 4.91e+00 e.10.1.1 -11986 1g99A 408 4.99e+00 1g99A c.55.1.2 33457 c.55.1.2 33458 1fnnA 389 5.07e+00 1fnnA a.4.5.11 16129 c.37.1.20 32426 4pfk 319 5.49e+00 3pfk c.89.1.1 35582 1fs5A 266 5.51e+00 unknown_sccs 65044 1qc7A 101 6.05e+00 1qc7A a.118.14.1 18456 1j0aA 325 6.45e+00 c.79.1.1 83871 1nal1 297 6.65e+00 1nal3 1nni1 174 6.96e+00 1wab 232 7.25e+00 1wab c.23.10.3 31341 1bzyA 217 7.56e+00 1qk3A c.61.1.1 34071 1o1zA 234 7.97e+00 c.1.18.3 86555 1tqyA 424 7.99e+00 1qrrA 394 8.01e+00 1qrrA c.2.1.2 29824 1es9A 232 8.53e+00 1wab c.23.10.3 31340 1ufoA 238 9.51e+00 unknown_sccs -8303 1tk1A 260 9.68e+00 1v3vA 333 9.69e+00 1pujA 282 9.74e+00 c.37.1.8 88294 1f6dA 376 9.84e+00 1f6dA c.87.1.3 35467 1pea 385 1.01e+01 1pea c.93.1.1 35662 1pl8A 356 1.02e+01 b.35.1.2 -3716 c.2.1.1 -5740 1qlpA 394 1.06e+01 1ovaA e.1.1.1 42628 1ofuA 320 1.10e+01 c.32.1.1 86972 d.79.2.1 86973 1mi3A 322 1.18e+01 c.1.7.1 -5257 1fcjA 322 1.22e+01 1oasA c.79.1.1 35289 1uj2A 252 1.24e+01 c.37.1.6 -7061 1rxxA 421 1.29e+01 unknown_sccs -10982 1jpmA 366 1.29e+01 c.1.11.2 67031 d.54.1.1 67032 1nriA 306 1.33e+01 c.80.1.3 86123 1iibA 106 1.42e+01 1iibA c.44.2.1 32648 1f2dA 341 1.43e+01 1f2dA c.79.1.1 35298 1s6yA 450 1.46e+01 1gpmA 525 1.46e+01 1gpmA c.23.16.1 31405 c.26.2.1 31608 d.52.2.1 38826 1fsz 372 1.47e+01 1fsz c.32.1.1 31750 d.79.2.1 39802 1i36A 264 1.49e+01 a.100.1.8 71108 c.2.1.6 71109 1scuA 288 1.56e+01 2scuA c.2.1.8 30307 c.23.4.1 31135 2fcr 173 1.59e+01 1rcf c.23.5.1 31151 1o2dA 371 1.60e+01 e.22.1.2 86591 1c4kA 730 1.63e+01 1ordA c.23.1.4 31273 c.67.1.5 34502 d.125.1.1 41123 1srrA 124 1.65e+01 1dz3A c.23.1.1 31110 1iatA 557 1.70e+01 1dqrA c.80.1.2 62123 1o58A 303 1.71e+01 c.79.1.1 -8503 1hl2A 297 1.72e+01 c.1.10.1 83581 1oivA 191 1.76e+01 c.37.1.8 -7074 1mfmA 153 1.76e+01 1mfmA b.1.8.1 22246 1uslA 170 1.82e+01 c.121.1.1 -6682 1lk5A 229 1.83e+01 unknown_sccs 73960 d.58.40.1 73961 1ct9A 553 1.84e+01 1ct9A c.26.2.1 31616 d.153.1.1 41834 1g8aA 227 1.85e+01 c.66.1.3 -8049 1km4A 247 1.85e+01 c.1.2.3 72740 1gy8A 397 1.89e+01 c.2.1.2 83376 1t64A 377 1.91e+01 1tk9A 188 1.93e+01 1tqyB 415 1.99e+01 1j97A 211 2.08e+01 1f5sA c.108.1.4 62753 1f74A 293 2.11e+01 1nal3 c.1.10.1 29079 1a76 326 2.17e+01 1a76 a.60.7.1 18091 c.120.1.2 33361 1kblA 873 2.18e+01 c.1.12.2 68384 c.8.1.1 68385 d.142.1.5 68386 1rkqA 282 2.19e+01 c.108.1.10 -6847 1p5jA 372 2.23e+01 2dri 271 2.23e+01 2dri c.93.1.1 35637 1c3pA 375 2.26e+01 1c3pA c.42.1.2 32606 1rljA 139 2.27e+01 1rvgA 305 2.31e+01 c.1.10.2 -5500 1mh1 186 2.31e+01 1eesA c.37.1.8 32002 1ufkA 254 2.33e+01 unknown_sccs -8103 1ad4A 266 2.34e+01 1aj2 c.1.21.1 29670 1dcs 311 2.35e+01 1dcs b.82.2.1 28124 1vi2A 300 2.38e+01 c.2.1.7 -5960 c.58.1.5 -6366 1viaA 175 2.38e+01 c.37.1.2 -7021 1yasA 257 2.40e+01 1qj4A c.69.1.20 34801 1vjrA 271 2.42e+01 unknown_sccs -6853 1oj7A 408 2.42e+01 1ih8A 271 2.45e+01 2nsyA c.26.2.1 62377 1vhcA 224 2.48e+01 c.1.10.1 -5488 2cmd 312 2.50e+01 2cmd c.2.1.5 30135 d.162.1.1 42102 1ig0A 319 2.56e+01 1ig0A b.82.6.1 62354 c.100.1.1 62355 1knqA 175 2.58e+01 c.37.1.17 72786 1ooeA 236 2.60e+01 c.2.1.2 87196 2napA 723 2.61e+01 2napA b.52.2.2 26926 c.81.1.1 35334 1jvnA 555 2.62e+01 c.1.2.1 67355 c.23.16.1 67356 1h0hA 977 2.63e+01 b.52.2.2 76435 c.81.1.1 76436 1cnv 299 2.63e+01 1cnv c.1.8.5 28989 1poxA 585 2.66e+01 1poxA c.31.1.3 31731 c.36.1.5 31793 c.36.1.9 31794 1fzqA 181 2.75e+01 1hurA c.37.1.8 32060 1kqpA 271 2.76e+01 c.26.2.1 72883 1tmy 120 2.81e+01 1dbwA c.23.1.1 31083 2pfkA 320 2.83e+01 3pfk c.89.1.1 35577 1oc2A 348 2.84e+01 c.2.1.2 -5753 1f0lA 535 2.87e+01 1ddt b.2.1.1 22377 d.166.1.1 42239 f.1.2.1 43382 1jqeA 292 2.91e+01 c.66.1.19 71789 1c7qA 445 2.93e+01 2pgi c.80.1.2 35307 1usgA 346 2.96e+01 c.93.1.1 -8635 1ikpA 613 2.96e+01 b.29.1.7 66182 d.166.1.1 66183 f.1.5.1 66184 1hjrA 158 3.01e+01 1hjrA c.55.3.6 33727 1khdA 345 3.03e+01 a.46.2.1 77400 c.27.1.1 77401 1l7mA 211 3.08e+01 c.108.1.4 73664 1b0pA 1231 3.08e+01 c.36.1.8 31831 c.36.1.12 31832 c.48.1.3 33104 c.64.1.1 34157 d.58.1.5 39003 1vkmA 297 3.08e+01 1edt 271 3.09e+01 2ebn c.1.8.5 28993 1h2bA 359 3.11e+01 b.35.1.2 -3679 c.2.1.1 -5703 1ituA 369 3.12e+01 c.1.9.7 71423 1qh8A 478 3.13e+01 1qguA c.92.2.3 35633 1mkzA 172 3.17e+01 c.57.1.1 84998 7odcA 424 3.18e+01 7odcA b.49.2.3 26488 c.1.6.1 28650 1lqaA 346 3.22e+01 c.1.7.1 84674 1uocA 289 3.26e+01 unknown_sccs -7671 1ako 268 3.28e+01 1ako d.151.1.1 41779 1ag9A 175 3.29e+01 1rcf c.23.5.1 31178 1ne9A 335 3.34e+01 d.108.1.4 -10805 d.108.1.4 -10806 1ohvA 472 3.38e+01 c.67.1.4 -8181 2ae2A 260 3.40e+01 1bdb c.2.1.2 29945 1smd 496 3.40e+01 1smd b.71.1.1 27768 c.1.8.1 28755 1fgs 428 3.42e+01 1fgs c.59.1.2 33959 c.72.2.2 34962 1l6oA 95 3.45e+01 b.36.1.1 84534 1gewA 356 3.48e+01 1gewA c.67.1.1 60470 1hdiA 413 3.50e+01 16pk c.86.1.1 60964 1kekA 1231 3.50e+01 c.36.1.8 68524 c.36.1.12 68525 c.48.1.3 68526 c.64.1.1 68527 d.58.1.5 68528 1gtmA 419 3.53e+01 1hwyA c.2.1.7 30223 c.58.1.1 33871 1kevA 351 3.54e+01 1pedA b.35.1.2 24749 c.2.1.1 29765 1qj4A 257 3.58e+01 1qj4A c.69.1.20 34796 1gpjA 404 3.61e+01 a.151.1.1 65451 c.2.1.7 65452 d.58.39.1 65453 1vkfA 188 3.62e+01 1iukA 140 3.64e+01 c.2.1.8 83712 1gdeA 389 3.73e+01 c.67.1.1 60456 1kepA 348 3.83e+01 c.2.1.2 68536 4pgaA 337 3.83e+01 4pgaA c.88.1.1 35565 1tbmA 326 3.84e+01 1ri5A 298 3.84e+01 unknown_sccs -8063 1apxA 249 3.85e+01 1ryc a.93.1.1 18669 4enl 436 3.85e+01 4enl c.1.11.1 29202 d.54.1.1 38846 1e79A 510 3.86e+01 1skyB a.69.1.1 18269 b.49.1.1 26434 c.37.1.11 32314 1l8nA 679 3.87e+01 c.1.8.10 84564 d.92.2.2 84565 1eq2A 310 3.87e+01 1eq2A c.2.1.2 29814 1qmvA 197 3.87e+01 1qq2A c.47.1.10 33066 1gs5A 258 3.87e+01 c.73.1.2 70395 1fj2A 232 3.90e+01 1auoA c.69.1.14 34720 1b43A 340 3.93e+01 1a76 a.60.7.1 18092 c.120.1.2 33362