Best Alignments for T0281

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1lngA/T0281-1lngA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1lngA/T0281-1lngA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 5.6623e-016.7396e-02 d.201.1.1
1ixkA/T0281-1ixkA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1ixkA/T0281-1ixkA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 9.6872e-012.5509e-01 unknown_sccs
1gefA/T0281-1gefA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1gefA/T0281-1gefA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 1.3722e+008.2979e-02 1gefA c.52.1.18
1ipiA/T0281-1ipiA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1ipiA/T0281-1ipiA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 1.6316e+007.0029e-02 c.52.1.18
1p5hA/T0281-1p5hA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1p5hA/T0281-1p5hA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 1.8582e+002.0926e-01 c.123.1.1
1peeA/T0281-1peeA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1peeA/T0281-1peeA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 2.1240e+002.7938e-01
1lj9A/T0281-1lj9A-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1lj9A/T0281-1lj9A-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 3.0360e+006.5916e-01 a.4.5.28
1aoy/T0281-1aoy-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1aoy/T0281-1aoy-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 3.0435e+009.7402e-01 1aoy a.4.5.3
1tbxA/T0281-1tbxA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1tbxA/T0281-1tbxA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 3.5896e+001.1509e+00
1b7yB/T0281-1b7yB-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1b7yB/T0281-1b7yB-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 4.2832e+001.8126e+00 1pysB b.40.4.4
d.138.1.1
a.6.1.1
d.58.13.1
d.104.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001