# TARGET T0281 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0281.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 26.5168 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.295 0.182 0.183 0.221 0.020 0.035 0.038 0.005 0.019 0.002 0.001 2 W 0.133 0.173 0.397 0.124 0.029 0.055 0.041 0.005 0.037 0.003 0.002 3 M 0.046 0.336 0.439 0.003 0.041 0.014 0.020 0.001 0.095 0.005 0.001 4 P 0.032 0.003 0.865 0.001 0.001 0.023 0.001 0.001 0.002 0.001 0.072 5 P 0.092 0.025 0.847 0.010 0.002 0.018 0.001 0.001 0.001 0.001 0.005 6 R 0.008 0.118 0.756 0.001 0.013 0.064 0.001 0.001 0.038 0.002 0.001 7 P 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 8 E 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 9 E 0.994 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 10 V 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 11 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 12 R 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 K 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 L 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 R 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 R 0.988 0.001 0.001 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 17 L 0.234 0.001 0.003 0.761 0.001 0.001 0.001 0.001 0.001 0.001 0.001 18 G 0.020 0.001 0.004 0.005 0.003 0.001 0.170 0.723 0.001 0.074 0.001 19 F 0.178 0.146 0.446 0.092 0.070 0.028 0.012 0.007 0.003 0.017 0.001 20 V 0.113 0.543 0.224 0.022 0.040 0.032 0.004 0.001 0.020 0.001 0.001 21 E 0.145 0.257 0.481 0.008 0.007 0.080 0.001 0.001 0.021 0.001 0.001 22 R 0.415 0.336 0.094 0.060 0.022 0.038 0.004 0.001 0.030 0.001 0.001 23 M 0.209 0.310 0.216 0.056 0.113 0.039 0.028 0.004 0.022 0.003 0.001 24 A 0.159 0.331 0.253 0.087 0.095 0.033 0.010 0.004 0.023 0.004 0.001 25 K 0.094 0.426 0.198 0.119 0.094 0.015 0.015 0.005 0.028 0.004 0.001 26 G 0.035 0.027 0.080 0.013 0.197 0.001 0.044 0.140 0.003 0.460 0.001 27 G 0.146 0.073 0.329 0.067 0.221 0.011 0.012 0.044 0.002 0.089 0.007 28 H 0.125 0.348 0.159 0.101 0.182 0.021 0.027 0.010 0.017 0.009 0.001 29 R 0.065 0.585 0.178 0.023 0.096 0.019 0.007 0.001 0.024 0.002 0.001 30 L 0.065 0.622 0.232 0.018 0.022 0.026 0.001 0.001 0.014 0.001 0.001 31 Y 0.025 0.659 0.140 0.019 0.100 0.025 0.003 0.001 0.026 0.001 0.001 32 T 0.016 0.687 0.218 0.015 0.017 0.029 0.001 0.001 0.016 0.001 0.001 33 H 0.008 0.184 0.406 0.002 0.059 0.036 0.013 0.001 0.284 0.007 0.001 34 P 0.757 0.006 0.105 0.055 0.001 0.013 0.001 0.001 0.001 0.002 0.058 35 D 0.063 0.022 0.083 0.625 0.007 0.018 0.153 0.007 0.019 0.003 0.001 36 G 0.003 0.002 0.016 0.013 0.020 0.001 0.103 0.792 0.001 0.050 0.001 37 R 0.015 0.461 0.425 0.025 0.035 0.017 0.006 0.001 0.014 0.001 0.001 38 I 0.002 0.417 0.537 0.001 0.006 0.023 0.001 0.001 0.013 0.001 0.001 39 V 0.004 0.612 0.315 0.002 0.006 0.042 0.001 0.001 0.019 0.001 0.001 40 V 0.004 0.399 0.492 0.001 0.004 0.069 0.001 0.001 0.029 0.001 0.001 41 V 0.006 0.409 0.403 0.002 0.008 0.061 0.003 0.001 0.108 0.001 0.001 42 P 0.045 0.055 0.830 0.006 0.002 0.051 0.001 0.001 0.006 0.001 0.004 43 F 0.120 0.285 0.430 0.042 0.049 0.031 0.006 0.003 0.021 0.012 0.001 44 H 0.234 0.095 0.263 0.214 0.022 0.069 0.048 0.010 0.028 0.014 0.002 45 S 0.155 0.075 0.322 0.283 0.060 0.013 0.050 0.022 0.011 0.009 0.001 46 G 0.081 0.014 0.057 0.039 0.040 0.003 0.124 0.530 0.002 0.109 0.001 47 E 0.225 0.106 0.270 0.297 0.011 0.054 0.017 0.001 0.015 0.001 0.003 48 L 0.015 0.274 0.584 0.004 0.021 0.026 0.008 0.001 0.067 0.001 0.001 49 P 0.015 0.007 0.927 0.001 0.001 0.037 0.001 0.001 0.005 0.001 0.007 50 K 0.791 0.004 0.165 0.028 0.001 0.003 0.001 0.002 0.001 0.001 0.003 51 G 0.570 0.004 0.022 0.046 0.023 0.001 0.019 0.267 0.001 0.047 0.001 52 T 0.827 0.019 0.072 0.052 0.006 0.017 0.001 0.001 0.005 0.001 0.001 53 F 0.976 0.003 0.005 0.012 0.001 0.002 0.001 0.001 0.001 0.001 0.001 54 K 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 55 R 0.990 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 56 I 0.993 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 57 L 0.993 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 58 R 0.992 0.002 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 59 D 0.930 0.003 0.005 0.059 0.001 0.001 0.001 0.001 0.001 0.001 0.001 60 A 0.298 0.007 0.024 0.667 0.002 0.001 0.001 0.001 0.001 0.001 0.001 61 G 0.005 0.001 0.002 0.024 0.001 0.002 0.532 0.423 0.002 0.007 0.001 62 L 0.001 0.231 0.722 0.004 0.017 0.022 0.001 0.001 0.002 0.001 0.001 63 T 0.001 0.281 0.546 0.001 0.125 0.034 0.001 0.001 0.011 0.002 0.001 64 E 0.981 0.005 0.004 0.005 0.002 0.002 0.001 0.001 0.001 0.001 0.001 65 E 0.987 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 66 E 0.950 0.001 0.002 0.045 0.001 0.001 0.001 0.001 0.001 0.001 0.001 67 F 0.870 0.007 0.015 0.095 0.001 0.004 0.006 0.001 0.001 0.001 0.001 68 H 0.865 0.031 0.058 0.035 0.004 0.003 0.002 0.001 0.002 0.001 0.001 69 N 0.320 0.007 0.033 0.508 0.004 0.033 0.055 0.009 0.029 0.001 0.001 70 L 0.231 0.065 0.480 0.122 0.003 0.061 0.011 0.001 0.025 0.001 0.001