# TARGET T0281 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0281.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 21.5106 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.011 0.005 0.004 0.005 0.131 0.844 2 W 0.026 0.014 0.005 0.007 0.138 0.810 3 M 0.023 0.024 0.003 0.004 0.104 0.841 4 P 0.014 0.017 0.002 0.004 0.114 0.849 5 P 0.005 0.011 0.002 0.010 0.071 0.901 6 R 0.002 0.002 0.001 0.033 0.035 0.926 7 P 0.001 0.001 0.003 0.986 0.003 0.008 8 E 0.001 0.001 0.002 0.995 0.002 0.001 9 E 0.001 0.001 0.002 0.997 0.001 0.001 10 V 0.001 0.001 0.001 0.997 0.001 0.001 11 A 0.001 0.001 0.001 0.999 0.001 0.001 12 R 0.001 0.001 0.001 0.999 0.001 0.001 13 K 0.001 0.001 0.001 0.999 0.001 0.001 14 L 0.001 0.001 0.001 0.999 0.001 0.001 15 R 0.001 0.001 0.002 0.997 0.001 0.001 16 R 0.001 0.001 0.001 0.997 0.001 0.001 17 L 0.001 0.001 0.001 0.988 0.003 0.009 18 G 0.001 0.001 0.001 0.099 0.038 0.861 19 F 0.057 0.011 0.014 0.091 0.147 0.680 20 V 0.443 0.010 0.043 0.150 0.140 0.213 21 E 0.510 0.008 0.055 0.215 0.130 0.082 22 R 0.508 0.009 0.052 0.186 0.153 0.092 23 M 0.297 0.008 0.057 0.180 0.248 0.211 24 A 0.175 0.012 0.027 0.211 0.258 0.317 25 K 0.192 0.024 0.015 0.102 0.213 0.454 26 G 0.234 0.019 0.012 0.051 0.203 0.482 27 G 0.255 0.021 0.028 0.103 0.217 0.376 28 H 0.332 0.015 0.075 0.100 0.214 0.264 29 R 0.397 0.007 0.139 0.129 0.180 0.148 30 L 0.528 0.011 0.116 0.120 0.117 0.108 31 Y 0.755 0.015 0.030 0.055 0.073 0.073 32 T 0.798 0.042 0.006 0.022 0.048 0.084 33 H 0.196 0.027 0.004 0.004 0.750 0.019 34 P 0.008 0.002 0.010 0.001 0.974 0.006 35 D 0.003 0.001 0.007 0.001 0.983 0.006 36 G 0.032 0.004 0.004 0.001 0.949 0.012 37 R 0.445 0.011 0.001 0.001 0.158 0.386 38 I 0.957 0.013 0.001 0.001 0.005 0.025 39 V 0.987 0.002 0.001 0.001 0.002 0.009 40 V 0.973 0.002 0.001 0.001 0.004 0.021 41 V 0.856 0.002 0.001 0.001 0.024 0.117 42 P 0.410 0.006 0.002 0.001 0.103 0.479 43 F 0.126 0.017 0.005 0.001 0.191 0.661 44 H 0.054 0.037 0.015 0.001 0.502 0.391 45 S 0.014 0.014 0.111 0.006 0.713 0.141 46 G 0.010 0.008 0.118 0.011 0.742 0.111 47 E 0.013 0.027 0.120 0.023 0.697 0.120 48 L 0.010 0.047 0.018 0.033 0.447 0.444 49 P 0.008 0.027 0.010 0.080 0.382 0.492 50 K 0.002 0.002 0.036 0.699 0.196 0.065 51 G 0.004 0.004 0.027 0.758 0.147 0.060 52 T 0.002 0.004 0.016 0.942 0.020 0.016 53 F 0.002 0.001 0.005 0.985 0.003 0.005 54 K 0.001 0.001 0.002 0.994 0.001 0.002 55 R 0.001 0.001 0.002 0.995 0.001 0.001 56 I 0.001 0.001 0.001 0.996 0.001 0.001 57 L 0.001 0.001 0.002 0.994 0.003 0.001 58 R 0.001 0.001 0.003 0.992 0.003 0.001 59 D 0.001 0.001 0.005 0.985 0.006 0.003 60 A 0.001 0.001 0.005 0.961 0.009 0.024 61 G 0.001 0.001 0.001 0.012 0.031 0.955 62 L 0.004 0.007 0.001 0.002 0.036 0.949 63 T 0.019 0.009 0.002 0.007 0.047 0.916 64 E 0.005 0.001 0.280 0.609 0.049 0.055 65 E 0.005 0.001 0.299 0.639 0.041 0.016 66 E 0.006 0.001 0.410 0.512 0.061 0.010 67 F 0.012 0.004 0.099 0.767 0.078 0.041 68 H 0.013 0.005 0.039 0.772 0.078 0.093 69 N 0.012 0.006 0.014 0.450 0.102 0.415 70 L 0.006 0.003 0.002 0.056 0.052 0.882