# TARGET T0281 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0281.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 21.5106 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.010 0.832 0.002 0.002 0.004 0.001 0.001 0.003 0.091 0.014 0.029 0.011 2 W 0.001 0.025 0.798 0.003 0.002 0.004 0.001 0.001 0.006 0.093 0.019 0.003 0.045 3 M 0.001 0.010 0.687 0.001 0.001 0.001 0.001 0.001 0.005 0.260 0.008 0.022 0.004 4 P 0.001 0.009 0.871 0.001 0.001 0.001 0.001 0.001 0.004 0.086 0.009 0.001 0.019 5 P 0.001 0.042 0.837 0.001 0.001 0.001 0.001 0.001 0.003 0.098 0.011 0.006 0.002 6 R 0.001 0.022 0.879 0.001 0.001 0.002 0.001 0.001 0.001 0.092 0.002 0.001 0.003 7 P 0.001 0.001 0.034 0.001 0.003 0.944 0.001 0.001 0.001 0.009 0.009 0.001 0.001 8 E 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 9 E 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 10 V 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 11 A 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 12 R 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 K 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 L 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 15 R 0.001 0.001 0.001 0.001 0.002 0.989 0.001 0.001 0.001 0.001 0.007 0.001 0.001 16 R 0.001 0.001 0.001 0.001 0.003 0.917 0.001 0.001 0.001 0.001 0.077 0.001 0.001 17 L 0.001 0.001 0.002 0.001 0.003 0.291 0.001 0.001 0.001 0.004 0.699 0.001 0.001 18 G 0.001 0.001 0.075 0.001 0.003 0.041 0.001 0.001 0.001 0.049 0.828 0.001 0.001 19 F 0.001 0.011 0.818 0.001 0.006 0.018 0.001 0.001 0.012 0.050 0.030 0.005 0.047 20 V 0.022 0.029 0.240 0.004 0.011 0.056 0.011 0.004 0.099 0.032 0.026 0.398 0.066 21 E 0.069 0.009 0.093 0.015 0.029 0.061 0.021 0.005 0.049 0.027 0.022 0.041 0.561 22 R 0.077 0.003 0.112 0.244 0.025 0.061 0.019 0.002 0.041 0.049 0.024 0.238 0.104 23 M 0.122 0.008 0.086 0.014 0.028 0.069 0.018 0.004 0.057 0.043 0.042 0.240 0.268 24 A 0.100 0.017 0.113 0.011 0.011 0.080 0.016 0.002 0.028 0.050 0.061 0.050 0.461 25 K 0.091 0.016 0.126 0.021 0.019 0.098 0.011 0.002 0.010 0.067 0.209 0.252 0.077 26 G 0.045 0.013 0.132 0.010 0.016 0.045 0.006 0.002 0.009 0.116 0.386 0.065 0.155 27 G 0.033 0.007 0.229 0.022 0.016 0.024 0.002 0.001 0.003 0.191 0.321 0.061 0.089 28 H 0.195 0.013 0.109 0.015 0.029 0.013 0.004 0.001 0.002 0.137 0.121 0.166 0.194 29 R 0.422 0.006 0.055 0.009 0.027 0.007 0.007 0.001 0.002 0.031 0.036 0.189 0.210 30 L 0.611 0.005 0.016 0.007 0.014 0.006 0.016 0.001 0.002 0.008 0.014 0.073 0.226 31 Y 0.709 0.002 0.010 0.003 0.002 0.004 0.020 0.001 0.001 0.004 0.005 0.141 0.099 32 T 0.571 0.051 0.018 0.004 0.001 0.004 0.024 0.001 0.002 0.013 0.008 0.065 0.238 33 H 0.023 0.014 0.621 0.011 0.002 0.003 0.002 0.001 0.002 0.081 0.034 0.096 0.111 34 P 0.001 0.002 0.069 0.004 0.007 0.001 0.001 0.001 0.001 0.066 0.835 0.004 0.011 35 D 0.001 0.001 0.029 0.001 0.007 0.001 0.001 0.001 0.001 0.082 0.876 0.002 0.002 36 G 0.001 0.003 0.119 0.004 0.004 0.001 0.001 0.001 0.001 0.757 0.098 0.011 0.003 37 R 0.007 0.003 0.713 0.001 0.001 0.001 0.002 0.001 0.005 0.131 0.020 0.050 0.066 38 I 0.074 0.040 0.104 0.010 0.001 0.001 0.037 0.001 0.009 0.017 0.001 0.015 0.692 39 V 0.070 0.002 0.020 0.014 0.001 0.001 0.036 0.001 0.012 0.001 0.001 0.833 0.011 40 V 0.102 0.004 0.029 0.002 0.001 0.001 0.083 0.002 0.063 0.001 0.001 0.005 0.708 41 V 0.017 0.001 0.029 0.005 0.001 0.001 0.019 0.001 0.090 0.002 0.001 0.830 0.006 42 P 0.004 0.007 0.204 0.003 0.001 0.001 0.012 0.002 0.190 0.011 0.001 0.002 0.564 43 F 0.002 0.027 0.585 0.008 0.002 0.001 0.003 0.001 0.083 0.067 0.009 0.199 0.012 44 H 0.001 0.022 0.740 0.001 0.008 0.001 0.001 0.001 0.024 0.108 0.019 0.007 0.069 45 S 0.001 0.005 0.051 0.001 0.431 0.009 0.001 0.001 0.001 0.036 0.462 0.001 0.002 46 G 0.001 0.002 0.052 0.001 0.213 0.005 0.001 0.001 0.001 0.106 0.617 0.002 0.001 47 E 0.001 0.019 0.317 0.002 0.219 0.016 0.001 0.001 0.003 0.163 0.251 0.001 0.009 48 L 0.001 0.048 0.548 0.001 0.006 0.009 0.001 0.001 0.001 0.366 0.015 0.004 0.001 49 P 0.001 0.005 0.846 0.001 0.010 0.023 0.001 0.001 0.001 0.062 0.050 0.001 0.003 50 K 0.001 0.002 0.037 0.001 0.057 0.382 0.001 0.001 0.001 0.043 0.478 0.001 0.001 51 G 0.001 0.005 0.062 0.001 0.051 0.325 0.001 0.001 0.001 0.036 0.516 0.002 0.001 52 T 0.001 0.022 0.207 0.001 0.040 0.624 0.001 0.001 0.007 0.030 0.051 0.003 0.014 53 F 0.003 0.009 0.042 0.001 0.012 0.895 0.001 0.001 0.006 0.007 0.016 0.004 0.005 54 K 0.001 0.001 0.008 0.001 0.008 0.967 0.001 0.001 0.001 0.004 0.005 0.001 0.002 55 R 0.001 0.001 0.002 0.001 0.002 0.990 0.001 0.001 0.001 0.001 0.002 0.001 0.001 56 I 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.001 0.001 0.001 57 L 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 58 R 0.001 0.001 0.001 0.001 0.001 0.990 0.001 0.001 0.001 0.001 0.008 0.001 0.001 59 D 0.001 0.001 0.002 0.001 0.004 0.950 0.001 0.001 0.001 0.001 0.042 0.001 0.001 60 A 0.001 0.001 0.006 0.001 0.011 0.496 0.001 0.001 0.001 0.013 0.473 0.001 0.001 61 G 0.001 0.001 0.037 0.001 0.004 0.026 0.001 0.001 0.001 0.026 0.905 0.001 0.001 62 L 0.001 0.012 0.831 0.001 0.001 0.005 0.001 0.001 0.001 0.139 0.008 0.002 0.001 63 T 0.001 0.025 0.933 0.001 0.001 0.004 0.001 0.001 0.002 0.022 0.002 0.001 0.011 64 E 0.001 0.001 0.020 0.001 0.151 0.798 0.001 0.001 0.001 0.004 0.023 0.001 0.002 65 E 0.001 0.001 0.003 0.001 0.201 0.772 0.001 0.001 0.001 0.003 0.018 0.001 0.001 66 E 0.001 0.001 0.002 0.001 0.238 0.745 0.001 0.001 0.001 0.002 0.012 0.001 0.001 67 F 0.001 0.003 0.018 0.001 0.065 0.877 0.001 0.001 0.001 0.005 0.025 0.001 0.004 68 H 0.001 0.011 0.060 0.003 0.066 0.639 0.001 0.001 0.002 0.015 0.190 0.008 0.003 69 N 0.001 0.007 0.177 0.001 0.047 0.317 0.001 0.001 0.001 0.053 0.385 0.001 0.010 70 L 0.001 0.003 0.843 0.001 0.007 0.021 0.001 0.001 0.001 0.108 0.014 0.001 0.002