# TARGET T0281 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0281.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 21.5106 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 M 0.005 0.002 0.001 0.011 0.007 0.010 0.965 2 W 0.018 0.031 0.004 0.013 0.020 0.042 0.874 3 M 0.018 0.014 0.005 0.005 0.227 0.031 0.701 4 P 0.013 0.004 0.003 0.001 0.062 0.041 0.875 5 P 0.008 0.028 0.001 0.002 0.069 0.007 0.885 6 R 0.002 0.004 0.001 0.003 0.017 0.001 0.973 7 P 0.001 0.001 0.012 0.962 0.002 0.010 0.013 8 E 0.001 0.001 0.003 0.994 0.001 0.002 0.001 9 E 0.001 0.001 0.006 0.991 0.001 0.001 0.001 10 V 0.001 0.001 0.001 0.997 0.001 0.001 0.001 11 A 0.001 0.001 0.001 0.996 0.001 0.002 0.001 12 R 0.001 0.001 0.001 0.997 0.001 0.002 0.001 13 K 0.001 0.001 0.001 0.997 0.001 0.002 0.001 14 L 0.001 0.001 0.002 0.992 0.001 0.004 0.001 15 R 0.001 0.001 0.005 0.982 0.001 0.011 0.001 16 R 0.001 0.001 0.004 0.946 0.001 0.047 0.001 17 L 0.001 0.001 0.006 0.574 0.013 0.396 0.009 18 G 0.010 0.001 0.005 0.100 0.078 0.686 0.120 19 F 0.279 0.013 0.005 0.039 0.064 0.042 0.559 20 V 0.901 0.010 0.003 0.023 0.013 0.004 0.046 21 E 0.925 0.003 0.003 0.018 0.009 0.004 0.038 22 R 0.907 0.003 0.005 0.018 0.016 0.008 0.043 23 M 0.825 0.004 0.007 0.016 0.038 0.014 0.096 24 A 0.710 0.013 0.008 0.016 0.063 0.037 0.153 25 K 0.416 0.015 0.012 0.020 0.150 0.133 0.254 26 G 0.208 0.007 0.009 0.017 0.277 0.091 0.390 27 G 0.241 0.013 0.023 0.025 0.134 0.197 0.367 28 H 0.381 0.030 0.074 0.062 0.110 0.149 0.195 29 R 0.501 0.016 0.088 0.067 0.060 0.059 0.210 30 L 0.669 0.013 0.050 0.071 0.043 0.031 0.123 31 Y 0.829 0.015 0.009 0.030 0.023 0.018 0.075 32 T 0.715 0.124 0.004 0.016 0.042 0.024 0.076 33 H 0.178 0.011 0.002 0.001 0.102 0.010 0.698 34 P 0.015 0.002 0.015 0.001 0.089 0.834 0.045 35 D 0.003 0.001 0.012 0.001 0.058 0.912 0.014 36 G 0.031 0.003 0.018 0.001 0.543 0.206 0.199 37 R 0.196 0.011 0.002 0.001 0.085 0.011 0.694 38 I 0.920 0.019 0.001 0.001 0.006 0.001 0.054 39 V 0.984 0.002 0.001 0.001 0.001 0.001 0.014 40 V 0.985 0.001 0.001 0.001 0.001 0.001 0.014 41 V 0.973 0.001 0.001 0.001 0.003 0.001 0.023 42 P 0.835 0.007 0.001 0.001 0.011 0.001 0.146 43 F 0.226 0.022 0.001 0.001 0.136 0.007 0.607 44 H 0.043 0.015 0.005 0.001 0.214 0.050 0.671 45 S 0.004 0.005 0.155 0.006 0.120 0.581 0.130 46 G 0.003 0.003 0.120 0.015 0.205 0.549 0.106 47 E 0.010 0.034 0.143 0.026 0.317 0.240 0.229 48 L 0.010 0.043 0.002 0.003 0.521 0.006 0.415 49 P 0.009 0.013 0.010 0.014 0.045 0.040 0.869 50 K 0.004 0.008 0.060 0.259 0.081 0.556 0.032 51 G 0.006 0.004 0.034 0.586 0.094 0.229 0.047 52 T 0.012 0.012 0.022 0.801 0.022 0.018 0.113 53 F 0.002 0.001 0.004 0.976 0.001 0.006 0.009 54 K 0.001 0.001 0.003 0.991 0.001 0.002 0.002 55 R 0.001 0.001 0.001 0.997 0.001 0.001 0.001 56 I 0.001 0.001 0.001 0.998 0.001 0.001 0.001 57 L 0.001 0.001 0.001 0.998 0.001 0.001 0.001 58 R 0.001 0.001 0.001 0.995 0.001 0.003 0.001 59 D 0.001 0.001 0.002 0.952 0.001 0.044 0.001 60 A 0.001 0.001 0.004 0.391 0.006 0.594 0.005 61 G 0.001 0.001 0.001 0.014 0.011 0.922 0.050 62 L 0.004 0.017 0.001 0.002 0.032 0.003 0.943 63 T 0.008 0.011 0.001 0.002 0.015 0.001 0.963 64 E 0.001 0.001 0.188 0.776 0.002 0.025 0.009 65 E 0.001 0.001 0.383 0.568 0.003 0.042 0.004 66 E 0.001 0.001 0.298 0.648 0.002 0.027 0.021 67 F 0.005 0.006 0.121 0.758 0.012 0.043 0.055 68 H 0.009 0.009 0.092 0.484 0.042 0.296 0.069 69 N 0.015 0.007 0.037 0.302 0.028 0.435 0.175 70 L 0.003 0.001 0.002 0.023 0.018 0.008 0.946