# TARGET T0281 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0281.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 21.5106 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.131 0.213 0.288 0.155 0.081 0.021 0.055 0.028 0.015 0.013 0.001 2 W 0.103 0.192 0.353 0.126 0.047 0.053 0.081 0.010 0.022 0.010 0.002 3 M 0.016 0.459 0.309 0.002 0.034 0.014 0.011 0.001 0.153 0.002 0.001 4 P 0.008 0.003 0.920 0.001 0.001 0.025 0.001 0.001 0.003 0.001 0.040 5 P 0.124 0.006 0.792 0.017 0.001 0.031 0.001 0.001 0.001 0.001 0.029 6 R 0.010 0.204 0.625 0.001 0.076 0.032 0.002 0.001 0.043 0.005 0.001 7 P 0.977 0.001 0.013 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 8 E 0.992 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 9 E 0.994 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 10 V 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 11 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 12 R 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 K 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 L 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 R 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 R 0.985 0.001 0.001 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 17 L 0.260 0.001 0.004 0.734 0.001 0.001 0.001 0.001 0.001 0.001 0.001 18 G 0.026 0.001 0.006 0.007 0.005 0.001 0.150 0.713 0.001 0.092 0.001 19 F 0.187 0.138 0.428 0.108 0.066 0.028 0.015 0.008 0.003 0.017 0.001 20 V 0.106 0.528 0.258 0.017 0.034 0.030 0.003 0.001 0.022 0.001 0.001 21 E 0.156 0.207 0.527 0.007 0.005 0.080 0.001 0.001 0.017 0.001 0.001 22 R 0.436 0.322 0.093 0.058 0.022 0.038 0.003 0.001 0.026 0.001 0.001 23 M 0.207 0.358 0.187 0.052 0.118 0.033 0.019 0.003 0.020 0.002 0.001 24 A 0.159 0.348 0.244 0.084 0.090 0.032 0.009 0.003 0.025 0.003 0.001 25 K 0.095 0.433 0.212 0.110 0.086 0.015 0.013 0.004 0.027 0.004 0.001 26 G 0.037 0.024 0.075 0.012 0.181 0.001 0.047 0.152 0.003 0.468 0.001 27 G 0.166 0.066 0.338 0.059 0.204 0.011 0.011 0.041 0.002 0.095 0.007 28 H 0.181 0.305 0.159 0.114 0.149 0.024 0.029 0.011 0.017 0.010 0.001 29 R 0.128 0.496 0.193 0.035 0.086 0.022 0.010 0.001 0.025 0.002 0.001 30 L 0.123 0.540 0.224 0.036 0.025 0.031 0.002 0.001 0.017 0.001 0.001 31 Y 0.039 0.537 0.199 0.037 0.103 0.037 0.009 0.001 0.035 0.001 0.001 32 T 0.026 0.620 0.259 0.026 0.021 0.032 0.001 0.001 0.016 0.001 0.001 33 H 0.008 0.161 0.455 0.003 0.070 0.043 0.012 0.001 0.240 0.008 0.001 34 P 0.793 0.005 0.080 0.078 0.001 0.009 0.001 0.001 0.001 0.002 0.029 35 D 0.073 0.023 0.067 0.697 0.009 0.015 0.088 0.006 0.018 0.003 0.001 36 G 0.005 0.003 0.022 0.024 0.027 0.001 0.086 0.761 0.001 0.070 0.001 37 R 0.018 0.335 0.507 0.038 0.047 0.020 0.014 0.003 0.015 0.002 0.001 38 I 0.002 0.396 0.567 0.002 0.009 0.015 0.001 0.001 0.009 0.001 0.001 39 V 0.002 0.672 0.264 0.001 0.005 0.034 0.001 0.001 0.022 0.001 0.001 40 V 0.002 0.237 0.680 0.001 0.001 0.066 0.001 0.001 0.012 0.001 0.001 41 V 0.002 0.469 0.178 0.001 0.009 0.054 0.004 0.001 0.281 0.001 0.001 42 P 0.025 0.032 0.903 0.002 0.001 0.029 0.001 0.001 0.002 0.001 0.005 43 F 0.086 0.389 0.369 0.047 0.039 0.042 0.003 0.002 0.021 0.002 0.001 44 H 0.113 0.284 0.346 0.092 0.034 0.044 0.015 0.005 0.050 0.017 0.001 45 S 0.106 0.058 0.446 0.159 0.038 0.022 0.110 0.024 0.017 0.019 0.001 46 G 0.028 0.006 0.024 0.026 0.027 0.002 0.129 0.667 0.001 0.091 0.001 47 E 0.142 0.158 0.343 0.232 0.015 0.062 0.024 0.002 0.018 0.001 0.002 48 L 0.008 0.286 0.580 0.002 0.014 0.025 0.009 0.001 0.076 0.001 0.001 49 P 0.016 0.006 0.917 0.001 0.001 0.046 0.001 0.001 0.005 0.001 0.009 50 K 0.656 0.009 0.279 0.037 0.003 0.005 0.002 0.003 0.001 0.002 0.003 51 G 0.406 0.006 0.032 0.039 0.042 0.002 0.029 0.363 0.001 0.080 0.001 52 T 0.770 0.031 0.107 0.051 0.011 0.021 0.001 0.001 0.007 0.001 0.001 53 F 0.981 0.002 0.003 0.010 0.001 0.002 0.001 0.001 0.001 0.001 0.001 54 K 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 55 R 0.994 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 56 I 0.996 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 57 L 0.995 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 58 R 0.995 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 59 D 0.935 0.002 0.003 0.058 0.001 0.001 0.001 0.001 0.001 0.001 0.001 60 A 0.305 0.005 0.019 0.667 0.001 0.001 0.001 0.001 0.001 0.001 0.001 61 G 0.008 0.001 0.002 0.023 0.001 0.002 0.598 0.355 0.003 0.007 0.001 62 L 0.004 0.206 0.739 0.008 0.016 0.024 0.001 0.001 0.003 0.001 0.001 63 T 0.003 0.235 0.586 0.002 0.079 0.072 0.001 0.001 0.020 0.002 0.001 64 E 0.946 0.011 0.015 0.013 0.005 0.005 0.001 0.001 0.002 0.001 0.001 65 E 0.976 0.002 0.003 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 66 E 0.871 0.004 0.007 0.114 0.002 0.001 0.001 0.001 0.001 0.001 0.001 67 F 0.707 0.018 0.046 0.190 0.005 0.010 0.015 0.003 0.005 0.001 0.001 68 H 0.633 0.082 0.132 0.113 0.013 0.012 0.006 0.001 0.007 0.002 0.001 69 N 0.242 0.033 0.145 0.333 0.016 0.079 0.085 0.015 0.049 0.002 0.001 70 L 0.323 0.089 0.344 0.135 0.009 0.049 0.024 0.003 0.022 0.001 0.001