# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gefA 123 1.68e-02 1gefA c.52.1.18 60465 1kz7A 353 2.25e-01 a.87.1.1 73333 b.55.1.1 73334 1peeA 180 2.32e-01 1euoA 180 2.65e-01 1np1A b.60.1.1 27163 1fgyA 127 3.12e-01 1faoA b.55.1.1 26976 1kzfA 230 3.90e-01 d.108.1.3 73354 1hh1A 143 5.26e-01 1gefA c.52.1.18 61036 1lngA 87 6.53e-01 d.201.1.1 74045 1pm1X 180 1.16e+00 1uiuA 502 1.61e+00 c.94.1.1 -8674 1ru8A 232 1.83e+00 c.26.2.1 -6635 1skoA 143 2.71e+00 3htsB 102 2.97e+00 2hts a.4.5.22 16175 1oglA 283 3.05e+00 unknown_sccs -1512 1ixkA 315 3.11e+00 unknown_sccs -8099 1tbxA 99 3.38e+00 1flmA 122 3.69e+00 1axj b.45.1.1 25747 1ka9H 200 3.96e+00 c.23.16.1 77308 1tiqA 180 4.11e+00 1tns 76 4.22e+00 1qpmA a.6.1.7 16228 1o7kA 131 4.43e+00 d.189.1.1 81144 1omiA 248 4.49e+00 a.4.5.4 87079 b.82.3.3 87080 1gps 47 5.48e+00 1gpt g.3.7.5 44176 1sdjA 310 6.74e+00 d.21.1.2 -9420 d.21.1.2 -9421 1hnnA 282 6.87e+00 c.66.1.15 65895 1owxA 121 6.87e+00 d.58.7.1 87494 1bjt 793 7.46e+00 1bjt e.11.1.1 43249 1ng7A 60 8.15e+00 a.178.1.1 85671 1gpuA 680 8.35e+00 c.36.1.6 65455 c.36.1.10 65454 c.48.1.1 65456 1q1hA 110 8.75e+00 unknown_sccs -262 1trkA 680 8.89e+00 1trkA c.36.1.6 31804 c.36.1.10 31803 c.48.1.1 33090 1hkfA 122 9.04e+00 b.1.1.1 83553 1dcoA 104 9.10e+00 1dcpA d.74.1.1 39680 1f46A 140 9.83e+00 1f46A d.129.4.1 59643 1omhA 293 1.03e+01 unknown_sccs -10527 1kq6A 141 1.04e+01 d.189.1.1 -9926 1kn6A 90 1.05e+01 d.58.3.3 72770 1aoy 78 1.06e+01 1aoy a.4.5.3 16087 1hw1A 239 1.07e+01 1e2xA a.4.5.6 16111 a.78.1.1 18441 1otvA 259 1.08e+01 unknown_sccs -1915 1up8A 598 1.08e+01 a.111.1.2 -1480 1uc8A 280 1.19e+01 unknown_sccs -6718 unknown_sccs -11230 1lj9A 144 1.26e+01 a.4.5.28 78035 1ag6 99 1.38e+01 1plc b.6.1.1 22857 1iv8A 720 1.42e+01 b.71.1.1 76842 c.1.8.1 76843 1v3vA 333 1.46e+01 1cei 94 1.49e+01 1cei a.28.2.1 16939 1ri6A 343 1.50e+01 unknown_sccs -4621 1r5jA 337 1.50e+01 unknown_sccs -8471 1r44A 202 1.53e+01 1ngnA 155 1.53e+01 a.96.1.2 85697 1dazC 99 1.56e+01 1hvc b.50.1.1 26501 1bcpF 99 1.57e+01 1prtF b.40.2.1 25142 1vhqA 232 1.57e+01 c.23.16.2 -6514 1kafA 108 1.65e+01 d.199.1.1 68372 1acc 735 1.66e+01 1acc f.11.1.1 43828 1b7yB 785 1.68e+01 1pysB a.6.1.1 16301 a.6.1.1 16302 b.40.4.4 25312 d.58.13.1 39311 d.104.1.1 40780 d.138.1.1 41456 1ol0A 121 1.75e+01 b.1.1.1 -2311 1kg0C 136 1.77e+01 d.169.1.1 72445 1l2lA 457 1.78e+01 c.72.1.3 77656 1unkA 87 1.80e+01 1cei a.28.2.1 16935 1vetA 124 1.81e+01 1d1gA 168 1.81e+01 1d1gA c.71.1.1 34889 1fjgP 88 1.88e+01 1emwA d.27.1.1 38444 1prtF 98 1.93e+01 1prtF b.40.2.1 25140 1lmzA 187 1.94e+01 a.96.1.4 74037 1sfxA 109 1.96e+01 1ddgA 374 2.07e+01 1amoA b.43.4.1 25671 c.25.1.4 31559 1c44A 123 2.07e+01 1qndA d.106.1.1 40795 1nh0A 99 2.07e+01 b.50.1.1 -4299 1q16B 512 2.11e+01 d.58.1.5 -9938 1jztA 246 2.14e+01 c.104.1.1 63319 1jg5A 83 2.23e+01 d.205.1.1 66666 1b8aA 438 2.29e+01 1b8aA b.40.4.1 25244 d.104.1.1 40765 1p2fA 220 2.34e+01 a.4.6.1 87720 c.23.1.1 87721 1rewA 114 2.54e+01 g.17.1.2 -12600 1c24A 263 2.65e+01 1c24A d.127.1.1 41148 1ofdA 1520 2.71e+01 b.80.4.1 86935 c.1.4.1 86936 d.153.1.1 86937 1o0xA 262 2.81e+01 d.127.1.1 80755 1fr2A 86 2.85e+01 a.28.2.1 83256 1mzbA 136 3.03e+01 unknown_sccs -266 1snnA 227 3.03e+01 1r0uA 148 3.06e+01 unknown_sccs -4466 1c1dA 355 3.06e+01 1bw9A c.2.1.7 30270 c.58.1.1 33918 1pvyA 227 3.09e+01 d.115.1.2 -10937 1sy3A 184 3.11e+01 1v2xA 194 3.15e+01 c.116.1.1 -6704 1rfmA 344 3.15e+01 c.122.1.1 -8032 1qz9A 416 3.20e+01 c.67.1.3 -8180 1jssA 224 3.34e+01 d.129.3.2 71844 1feuA 206 3.45e+01 1feuA b.53.1.1 59801 1acf 125 3.49e+01 3nul d.110.1.1 40882 1m7vA 363 3.64e+01 d.174.1.1 78748 1ccwA 137 3.70e+01 1be1 c.23.6.1 31238 1akz 223 3.80e+01 3eugA c.18.1.1 31007 1i52A 236 3.99e+01 1i52A c.68.1.13 61767