# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1o5oA 221 5.98e-15 c.61.1.1 -7954 1a3c 181 1.77e-13 1a3c c.61.1.1 34095 1bzyA 217 2.72e-12 1qk3A c.61.1.1 34071 1bd3A 243 7.24e-11 1bd3A c.61.1.1 34098 1cjbA 231 7.37e-11 1qk3A c.61.1.1 34079 1dkuA 317 1.71e-10 1dkuA c.61.1.2 34118 c.61.1.2 34119 1hgxA 183 5.47e-10 1tc1A c.61.1.1 34027 1fsgA 233 2.89e-09 1qk3A c.61.1.1 34029 1tc1A 220 2.50e-08 1tc1A c.61.1.1 34083 1qb7A 236 3.69e-06 1qb7A c.61.1.1 34087 1ecfA 504 6.79e-06 1ecfB c.61.1.1 34053 d.153.1.1 41820 1l1qA 186 9.01e-05 c.61.1.1 77653 1g2qA 187 1.43e-04 c.61.1.1 65117 1o57A 291 6.55e-04 unknown_sccs -249 c.61.1.1 -7960 1nulA 152 2.29e-03 1nulA c.61.1.1 34011 1opr 213 8.42e-03 1opr c.61.1.1 34091 1dqnA 230 2.34e-02 1dqnA c.61.1.1 34067 1dqpA 230 2.55e-02 1dqnA c.61.1.1 34069 1oroA 213 2.80e-02 1opr c.61.1.1 34093 1lh0A 213 2.80e-02 c.61.1.1 73896 1o58A 303 4.60e-01 c.79.1.1 -8503 1bn7A 294 1.17e+00 1bn6A c.69.1.8 34677 1qyiA 384 1.49e+00 unknown_sccs -6836 1hrdA 449 1.55e+00 1k89 c.2.1.7 30219 c.58.1.1 33867 1us5A 314 1.57e+00 c.94.1.1 -8686 1fp2A 352 1.98e+00 1fpxA a.4.5.29 59941 c.66.1.12 59942 1bgvA 449 2.04e+00 1k89 c.2.1.7 30217 c.58.1.1 33865 1t2dA 322 2.25e+00 c.2.1.5 -5920 d.162.1.1 -11487 1p0kA 349 2.38e+00 c.1.4.1 87648 1q1gA 276 2.83e+00 c.56.2.1 -7846 1h7wA 1025 2.92e+00 1h7wA a.1.2.2 15683 c.1.4.1 28628 c.3.1.1 30324 c.4.1.1 30609 d.58.1.5 39007 1gteA 1025 2.94e+00 a.1.2.2 70440 c.1.4.1 70441 c.3.1.1 70442 c.4.1.1 70443 d.58.1.5 70444 1lhpA 312 3.54e+00 c.72.1.5 77960 1h3fA 432 3.71e+00 c.26.1.1 76631 d.66.1.4 76632 1tmy 120 3.75e+00 1dbwA c.23.1.1 31083 1ej0A 180 3.77e+00 1ej0A c.66.1.2 34179 1ldg 316 3.92e+00 1ceqA c.2.1.5 30165 d.162.1.1 42132 1j4aA 333 4.02e+00 c.2.1.4 71502 c.23.12.1 71503 1vj0A 380 4.08e+00 b.35.1.2 -3697 c.2.1.1 -5721 1fcjA 322 4.24e+00 1oasA c.79.1.1 35289 1p4cA 380 4.30e+00 c.1.4.1 -5201 1jmkC 230 4.39e+00 c.69.1.22 71747 1ub0A 258 4.85e+00 c.72.1.2 88394 1r7lA 110 4.86e+00 2pia 321 4.98e+00 2pia b.43.4.2 25663 c.25.1.2 31553 d.15.4.2 37704 1g97A 459 5.03e+00 1fwyA b.81.1.4 60394 c.68.1.5 60395 1qorA 327 5.07e+00 1qorA b.35.1.2 24766 c.2.1.1 29782 1h1dA 221 5.37e+00 c.66.1.1 83452 1thtA 305 5.41e+00 1thtA c.69.1.13 34711 1vk9A 151 5.75e+00 1pg5A 299 5.79e+00 3csuA 310 5.96e+00 3csuA c.78.1.1 35094 c.78.1.1 35095 1kwsA 261 6.04e+00 c.68.1.7 73083 1nsf 273 6.27e+00 1d2nA c.37.1.20 32429 1m1nA 491 6.27e+00 c.92.2.3 78417 1q7bA 244 6.28e+00 c.2.1.2 -5826 1ughI 82 6.59e+00 1ugiA d.17.5.1 38133 1p2fA 220 6.91e+00 a.4.6.1 87720 c.23.1.1 87721 1mvoA 136 7.00e+00 c.23.1.1 79513 1lldA 319 7.39e+00 3ldh c.2.1.5 30177 d.162.1.1 42144 1cvrA 435 7.50e+00 1cvrA b.1.18.12 21949 c.17.1.2 31006 1d2nA 272 7.73e+00 1d2nA c.37.1.20 32428 1iirA 415 8.22e+00 1iirA c.87.1.5 62453 1qh8A 478 8.38e+00 1qguA c.92.2.3 35633 1im8A 244 8.45e+00 c.66.1.14 66212 1jbkA 195 8.68e+00 c.37.1.20 71631 1a5t 334 9.17e+00 1a5t a.80.1.1 18450 c.37.1.20 32423 1k2yX 463 9.79e+00 c.84.1.1 68063 c.84.1.1 68064 c.84.1.1 68065 d.129.2.1 68066 1dxy 333 1.00e+01 1dxy c.2.1.4 30094 c.23.12.1 31354 1pjqA 457 1.01e+01 c.2.1.11 -5904 c.90.1.1 -8611 e.37.1.1 -12004 1byrA 155 1.02e+01 1byrA d.136.1.1 41450 1hm9A 468 1.05e+01 b.81.1.4 65866 c.68.1.5 65867 1mwxA 646 1.05e+01 d.17.4.5 79610 d.175.1.1 79611 e.3.1.1 79612 1b16A 254 1.10e+01 1b16A c.2.1.2 29875 1o9gA 250 1.16e+01 c.66.1.29 86692 1gz6A 319 1.16e+01 c.2.1.2 76410 1hxhA 253 1.16e+01 c.2.1.2 76725 2dorA 311 1.20e+01 2dorA c.1.4.1 28593 1bia 321 1.20e+01 1bia a.4.5.1 16083 b.34.1.1 24447 d.104.1.2 40787 1nv8A 284 1.22e+01 c.66.1.30 86224 1ih8A 271 1.24e+01 2nsyA c.26.2.1 62377 1lam 484 1.24e+01 1lam c.56.5.3 33829 c.50.1.1 33166 1p1jA 533 1.26e+01 c.2.1.3 87687 d.81.1.3 87688 1jbeA 128 1.31e+01 3chy c.23.1.1 62845 1auoA 218 1.31e+01 1auoA c.69.1.14 34716 1kqpA 271 1.32e+01 c.26.2.1 72883 1o0uA 429 1.33e+01 c.118.1.1 80743 1jubA 311 1.36e+01 c.1.4.1 -5188 1gpjA 404 1.36e+01 a.151.1.1 65451 c.2.1.7 65452 d.58.39.1 65453 1gpuA 680 1.36e+01 c.36.1.6 65455 c.36.1.10 65454 c.48.1.1 65456 1fwkA 296 1.37e+01 1fwkA d.14.1.5 37576 d.58.26.1 39398 1ei6A 406 1.38e+01 unknown_sccs -8436 1qysA 106 1.40e+01 unknown_sccs -13432 1s1pA 331 1.44e+01 c.1.7.1 -5240 1lehA 364 1.46e+01 1bw9A c.2.1.7 30268 c.58.1.1 33916 1p5dX 463 1.47e+01 c.84.1.1 -8554 c.84.1.1 -8555 c.84.1.1 -8556 d.129.2.1 -11029 1fs5A 266 1.47e+01 unknown_sccs 65044 1fnnA 389 1.51e+01 1fnnA a.4.5.11 16129 c.37.1.20 32426 1nnlA 225 1.54e+01 c.108.1.4 85906 1h72C 296 1.54e+01 d.14.1.5 60712 d.58.26.1 60713 1ne2A 200 1.55e+01 c.66.1.32 85586 1luaA 287 1.55e+01 c.2.1.7 78216 c.58.1.4 78217 1qwkA 317 1.59e+01 c.1.7.1 -5237 1ct9A 553 1.62e+01 1ct9A c.26.2.1 31616 d.153.1.1 41834 1iv3A 152 1.62e+01 d.79.5.1 76828 1o66A 275 1.68e+01 c.1.12.8 -5590 1n8fA 350 1.70e+01 c.1.10.4 85397 1npyA 271 1.72e+01 c.2.1.7 85995 c.58.1.5 85996 1gg1A 350 1.73e+01 1qr7A c.1.10.4 29187 1e9rA 437 1.85e+01 c.37.1.11 64827 1bg6 359 1.85e+01 1bg6 a.100.1.5 18810 c.2.1.6 30214 1uayA 242 1.93e+01 c.2.1.2 88390 1o1yA 239 1.94e+01 c.23.16.1 86554 1omzA 293 1.97e+01 c.68.1.15 87093 8pchA 220 2.00e+01 1cs8A 1j08A 226 2.02e+01 c.47.1.2 83855 c.47.1.2 83856 1rz3A 201 2.03e+01 c.37.1.6 -7048 1s6yA 450 2.04e+01 1jvbA 347 2.05e+01 b.35.1.2 77181 c.2.1.1 77182 1mc0A 368 2.09e+01 d.110.2.1 78937 d.110.2.1 78938 1va4A 279 2.09e+01 1wdkC 390 2.11e+01 1vid 221 2.11e+01 1vid c.66.1.1 34178 1ofdA 1520 2.14e+01 b.80.4.1 86935 c.1.4.1 86936 d.153.1.1 86937 1bykA 255 2.18e+01 1bykA c.93.1.1 35706 1e0tA 470 2.20e+01 1a49A b.58.1.1 27064 c.1.12.1 29292 c.49.1.1 33146 1fnd 314 2.21e+01 1fnc b.43.4.2 25626 c.25.1.1 31516 1hdiA 413 2.26e+01 16pk c.86.1.1 60964 1l8aA 886 2.27e+01 c.36.1.6 73678 c.36.1.10 73677 c.48.1.1 73679 1in4A 334 2.32e+01 1hqcA a.4.5.11 62597 c.37.1.20 62598 1jj2L 194 2.33e+01 1ffkI d.12.1.2 63097 1fnc 314 2.37e+01 1fnc b.43.4.2 25627 c.25.1.1 31517 1v3hA 495 2.41e+01 1o1zA 234 2.43e+01 c.1.18.3 86555 1brt 277 2.46e+01 1brt c.69.1.12 34699 1q6cA 495 2.48e+01 c.1.8.1 -5300 1m1nB 522 2.53e+01 c.92.2.3 78418 1rxxA 421 2.54e+01 unknown_sccs -10982 1hyeA 313 2.54e+01 2cmd c.2.1.5 61400 d.162.1.1 61401 1obdA 306 2.55e+01 d.143.1.1 86767 1ihoA 283 2.60e+01 1ihoA c.26.1.4 62390 1ta3B 303 2.68e+01 1dorA 311 2.70e+01 2dorA c.1.4.1 28595 1byb 495 2.73e+01 1byb c.1.8.1 28790 4pfk 319 2.74e+01 3pfk c.89.1.1 35582 1kgsA 225 2.75e+01 a.4.6.1 68596 c.23.1.1 68597 1q0uA 219 2.77e+01 c.37.1.19 -7205 1dl5A 317 2.82e+01 1dl5A c.66.1.7 64720 d.197.1.1 64721 1dusA 194 2.89e+01 1dusA c.66.1.4 34182 1cqyA 99 2.91e+01 1b9zA b.3.1.1 22527 1nriA 306 2.93e+01 c.80.1.3 86123 1cf9A 753 2.97e+01 1cf9A c.23.16.3 31441 e.5.1.1 42815 3chy 128 2.97e+01 3chy c.23.1.1 31038 1h2bA 359 3.02e+01 b.35.1.2 -3679 c.2.1.1 -5703 1bkjA 240 3.07e+01 1bkjA d.90.1.1 40243 1914 232 3.08e+01 1914 d.49.1.1 83028 d.49.1.1 83029 1yasA 257 3.14e+01 1qj4A c.69.1.20 34801 1qj4A 257 3.15e+01 1qj4A c.69.1.20 34796 1jclA 260 3.21e+01 c.1.10.1 66501 1hqsA 423 3.26e+01 1iso c.77.1.1 61154 1ja9A 274 3.30e+01 c.2.1.2 62817 1vhwA 253 3.30e+01 c.56.2.1 -7765 1jcfA 344 3.34e+01 c.55.1.1 62878 c.55.1.1 62879 1iibA 106 3.36e+01 1iibA c.44.2.1 32648 8abp 306 3.43e+01 8abp c.93.1.1 35647 1sjdA 368 3.44e+01 1itcA 516 3.52e+01 b.3.1.1 83705 c.1.8.1 83706 1a48 306 3.53e+01 1a48 d.143.1.1 41590 1kv8A 216 3.55e+01 c.1.2.3 73054 1que 303 3.63e+01 1fnc b.43.4.2 25647 c.25.1.1 31537 1p1xA 260 3.68e+01 1cc1S 283 3.73e+01 2frvA e.19.1.1 43313 1v8gA 329 3.80e+01 a.46.2.1 -953 c.27.1.1 -6644 1q0sA 259 3.81e+01 c.66.1.28 -8110 1cg2A 393 3.90e+01 1cg2A c.56.5.4 33844 d.58.19.1 39360 1m3uA 264 3.93e+01 c.1.12.8 84784 1jilA 420 3.98e+01 c.26.1.1 66745