# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1o5oA 221 1.56e-13 c.61.1.1 -7954 1a3c 181 2.77e-12 1a3c c.61.1.1 34095 1bzyA 217 1.25e-11 1qk3A c.61.1.1 34071 1cjbA 231 1.86e-10 1qk3A c.61.1.1 34079 1dkuA 317 2.69e-10 1dkuA c.61.1.2 34118 c.61.1.2 34119 1bd3A 243 2.67e-09 1bd3A c.61.1.1 34098 1hgxA 183 4.20e-09 1tc1A c.61.1.1 34027 1fsgA 233 1.90e-08 1qk3A c.61.1.1 34029 1tc1A 220 1.68e-07 1tc1A c.61.1.1 34083 1ecfA 504 7.02e-05 1ecfB c.61.1.1 34053 d.153.1.1 41820 1qb7A 236 7.36e-05 1qb7A c.61.1.1 34087 1l1qA 186 2.74e-04 c.61.1.1 77653 1g2qA 187 3.91e-04 c.61.1.1 65117 1o57A 291 2.03e-03 unknown_sccs -249 c.61.1.1 -7960 1nulA 152 6.55e-03 1nulA c.61.1.1 34011 1dqpA 230 1.22e-02 1dqnA c.61.1.1 34069 1dqnA 230 1.24e-02 1dqnA c.61.1.1 34067 1oroA 213 3.09e-02 1opr c.61.1.1 34093 1opr 213 3.77e-02 1opr c.61.1.1 34091 1lh0A 213 4.79e-02 c.61.1.1 73896 1qyiA 384 4.67e-01 unknown_sccs -6836 1gteA 1025 7.07e-01 a.1.2.2 70440 c.1.4.1 70441 c.3.1.1 70442 c.4.1.1 70443 d.58.1.5 70444 1vk9A 151 7.53e-01 1h7wA 1025 7.66e-01 1h7wA a.1.2.2 15683 c.1.4.1 28628 c.3.1.1 30324 c.4.1.1 30609 d.58.1.5 39007 1o58A 303 7.87e-01 c.79.1.1 -8503 1q1gA 276 8.31e-01 c.56.2.1 -7846 1fcjA 322 2.79e+00 1oasA c.79.1.1 35289 1omzA 293 4.43e+00 c.68.1.15 87093 1ej0A 180 4.52e+00 1ej0A c.66.1.2 34179 1fwkA 296 4.71e+00 1fwkA d.14.1.5 37576 d.58.26.1 39398 1h72C 296 5.35e+00 d.14.1.5 60712 d.58.26.1 60713 1pg5A 299 5.47e+00 1nriA 306 5.51e+00 c.80.1.3 86123 1p2fA 220 5.54e+00 a.4.6.1 87720 c.23.1.1 87721 1gpuA 680 6.12e+00 c.36.1.6 65455 c.36.1.10 65454 c.48.1.1 65456 3csuA 310 6.30e+00 3csuA c.78.1.1 35094 c.78.1.1 35095 1tmy 120 6.42e+00 1dbwA c.23.1.1 31083 1e0tA 470 6.99e+00 1a49A b.58.1.1 27064 c.1.12.1 29292 c.49.1.1 33146 1cg2A 393 7.07e+00 1cg2A c.56.5.4 33844 d.58.19.1 39360 1ub0A 258 7.13e+00 c.72.1.2 88394 1uwcA 261 7.18e+00 c.69.1.17 -8352 1d2nA 272 8.01e+00 1d2nA c.37.1.20 32428 1fp2A 352 8.70e+00 1fpxA a.4.5.29 59941 c.66.1.12 59942 1trkA 680 8.84e+00 1trkA c.36.1.6 31804 c.36.1.10 31803 c.48.1.1 33090 1nsf 273 9.40e+00 1d2nA c.37.1.20 32429 1vj0A 380 9.96e+00 b.35.1.2 -3697 c.2.1.1 -5721 1p0kA 349 1.06e+01 c.1.4.1 87648 1jj2L 194 1.07e+01 1ffkI d.12.1.2 63097 1qorA 327 1.07e+01 1qorA b.35.1.2 24766 c.2.1.1 29782 1hyeA 313 1.09e+01 2cmd c.2.1.5 61400 d.162.1.1 61401 1dxy 333 1.10e+01 1dxy c.2.1.4 30094 c.23.12.1 31354 1a5t 334 1.10e+01 1a5t a.80.1.1 18450 c.37.1.20 32423 1p5dX 463 1.14e+01 c.84.1.1 -8554 c.84.1.1 -8555 c.84.1.1 -8556 d.129.2.1 -11029 1lhpA 312 1.14e+01 c.72.1.5 77960 1cf9A 753 1.20e+01 1cf9A c.23.16.3 31441 e.5.1.1 42815 1bykA 255 1.20e+01 1bykA c.93.1.1 35706 1k2yX 463 1.21e+01 c.84.1.1 68063 c.84.1.1 68064 c.84.1.1 68065 d.129.2.1 68066 1hm9A 468 1.28e+01 b.81.1.4 65866 c.68.1.5 65867 1b8oA 284 1.29e+01 1b8oA c.56.2.1 33762 1g97A 459 1.31e+01 1fwyA b.81.1.4 60394 c.68.1.5 60395 1p80A 753 1.32e+01 c.23.16.3 -6547 e.5.1.1 -11840 1r61A 207 1.35e+01 unknown_sccs -6086 1mh9A 197 1.42e+01 c.108.1.8 79118 1f3lA 321 1.47e+01 1g6q2 c.66.1.6 59630 1oz9A 150 1.51e+01 unknown_sccs -10588 1lldA 319 1.52e+01 3ldh c.2.1.5 30177 d.162.1.1 42144 1thtA 305 1.54e+01 1thtA c.69.1.13 34711 1jclA 260 1.55e+01 c.1.10.1 66501 1itcA 516 1.55e+01 b.3.1.1 83705 c.1.8.1 83706 1p1xA 260 1.57e+01 1h1dA 221 1.58e+01 c.66.1.1 83452 1kq3A 376 1.58e+01 e.22.1.2 68790 1m6yA 301 1.59e+01 a.60.13.1 78716 c.66.1.23 78717 1jmkC 230 1.59e+01 c.69.1.22 71747 2pia 321 1.60e+01 2pia b.43.4.2 25663 c.25.1.2 31553 d.15.4.2 37704 1bn7A 294 1.63e+01 1bn6A c.69.1.8 34677 1r7lA 110 1.69e+01 1iv3A 152 1.75e+01 d.79.5.1 76828 1upaA 573 1.79e+01 c.31.1.3 -6745 c.36.1.5 -6903 c.36.1.9 -6943 1p4cA 380 1.79e+01 c.1.4.1 -5201 1c7nA 399 1.83e+01 1d2fA c.67.1.3 34413 1a4yA 460 1.84e+01 1a4yA c.10.1.1 30852 1us5A 314 1.85e+01 c.94.1.1 -8686 1mvoA 136 1.94e+01 c.23.1.1 79513 1bg6 359 1.94e+01 1bg6 a.100.1.5 18810 c.2.1.6 30214 1iyxA 432 1.98e+01 c.1.11.1 83815 d.54.1.1 83816 1h3fA 432 1.99e+01 c.26.1.1 76631 d.66.1.4 76632 1q7bA 244 1.99e+01 c.2.1.2 -5826 1b16A 254 2.03e+01 1b16A c.2.1.2 29875 1bg4 302 2.07e+01 1taxA c.1.8.3 28806 1o1zA 234 2.08e+01 c.1.18.3 86555 1bgvA 449 2.11e+01 1k89 c.2.1.7 30217 c.58.1.1 33865 1whtA 256 2.12e+01 1ivyA c.69.1.5 34646 2cmd 312 2.19e+01 2cmd c.2.1.5 30135 d.162.1.1 42102 1b00A 127 2.20e+01 3chy c.23.1.1 31122 1q92A 197 2.23e+01 c.108.1.8 -6819 1poiB 260 2.32e+01 1poiB unknown_sccs 34155 1va4A 279 2.36e+01 1vhwA 253 2.39e+01 c.56.2.1 -7765 1iibA 106 2.43e+01 1iibA c.44.2.1 32648 1kv8A 216 2.44e+01 c.1.2.3 73054 1q6oA 216 2.44e+01 c.1.2.3 -5162 1cvrA 435 2.45e+01 1cvrA b.1.18.12 21949 c.17.1.2 31006 1byrA 155 2.48e+01 1byrA d.136.1.1 41450 1lc5A 364 2.51e+01 c.67.1.1 73827 1v3vA 333 2.58e+01 1dciA 275 2.65e+01 1dciA c.14.1.3 30918 1fw1A 216 2.69e+01 a.45.1.1 60051 c.47.1.5 60052 1vid 221 2.80e+01 1vid c.66.1.1 34178 1q0bA 367 2.92e+01 c.37.1.9 -7105 1ta3B 303 2.96e+01 1l6wA 220 2.97e+01 c.1.10.1 73632 1in4A 334 2.98e+01 1hqcA a.4.5.11 62597 c.37.1.20 62598 1luaA 287 2.99e+01 c.2.1.7 78216 c.58.1.4 78217 1heiA 451 3.00e+01 1heiA c.37.1.14 32463 c.37.1.14 32464 1qysA 106 3.04e+01 unknown_sccs -13432 1ih8A 271 3.05e+01 2nsyA c.26.2.1 62377 1g6oA 330 3.05e+01 1g6oA c.37.1.11 32430 1kqpA 271 3.06e+01 c.26.2.1 72883 1gnlA 544 3.07e+01 e.26.1.1 70287 1lv7A 257 3.08e+01 c.37.1.20 78232 1ughI 82 3.15e+01 1ugiA d.17.5.1 38133 1es9A 232 3.28e+01 1wab c.23.10.3 31340 1gky 187 3.32e+01 1gky c.37.1.1 31839 1j4aA 333 3.38e+01 c.2.1.4 71502 c.23.12.1 71503 1jbeA 128 3.39e+01 3chy c.23.1.1 62845 1whsA 255 3.41e+01 1ivyA c.69.1.5 34649 1iirA 415 3.42e+01 1iirA c.87.1.5 62453 1ub3A 220 3.49e+01 c.1.10.1 88395 1pwhA 327 3.51e+01 c.79.1.1 -8524 1in6A 334 3.53e+01 1hqcA a.4.5.11 62601 c.37.1.20 62602 2dorA 311 3.63e+01 2dorA c.1.4.1 28593 1914 232 3.67e+01 1914 d.49.1.1 83028 d.49.1.1 83029 1wab 232 3.73e+01 1wab c.23.10.3 31341 1dusA 194 3.74e+01 1dusA c.66.1.4 34182 1nf2A 268 3.76e+01 c.108.1.10 -6842 1g4yR 148 3.82e+01 1cll a.39.1.5 60252 8pchA 220 3.87e+01 1cs8A 1jbkA 195 3.87e+01 c.37.1.20 71631 1s6yA 450 3.92e+01 1bkjA 240 3.94e+01 1bkjA d.90.1.1 40243 1jsxA 207 4.00e+01 c.66.1.20 71846