# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1o5oA 221 3.83e-12 c.61.1.1 -7954 1a3c 181 1.27e-10 1a3c c.61.1.1 34095 1bzyA 217 3.82e-10 1qk3A c.61.1.1 34071 1cjbA 231 4.38e-09 1qk3A c.61.1.1 34079 1bd3A 243 9.59e-09 1bd3A c.61.1.1 34098 1dkuA 317 1.23e-08 1dkuA c.61.1.2 34118 c.61.1.2 34119 1hgxA 183 3.14e-08 1tc1A c.61.1.1 34027 1fsgA 233 6.67e-08 1qk3A c.61.1.1 34029 1tc1A 220 2.85e-07 1tc1A c.61.1.1 34083 1ecfA 504 3.86e-05 1ecfB c.61.1.1 34053 d.153.1.1 41820 1qb7A 236 9.48e-05 1qb7A c.61.1.1 34087 1l1qA 186 1.39e-04 c.61.1.1 77653 1g2qA 187 3.43e-04 c.61.1.1 65117 1o57A 291 2.65e-03 unknown_sccs -249 c.61.1.1 -7960 1nulA 152 7.43e-03 1nulA c.61.1.1 34011 1dqpA 230 1.27e-02 1dqnA c.61.1.1 34069 1dqnA 230 1.78e-02 1dqnA c.61.1.1 34067 1opr 213 1.86e-02 1opr c.61.1.1 34091 1oroA 213 3.23e-02 1opr c.61.1.1 34093 1lh0A 213 3.49e-02 c.61.1.1 73896 1gteA 1025 8.23e-02 a.1.2.2 70440 c.1.4.1 70441 c.3.1.1 70442 c.4.1.1 70443 d.58.1.5 70444 1h7wA 1025 1.08e-01 1h7wA a.1.2.2 15683 c.1.4.1 28628 c.3.1.1 30324 c.4.1.1 30609 d.58.1.5 39007 1o58A 303 2.68e-01 c.79.1.1 -8503 1vk9A 151 3.88e-01 1q1gA 276 5.48e-01 c.56.2.1 -7846 1tmy 120 9.50e-01 1dbwA c.23.1.1 31083 1itcA 516 1.53e+00 b.3.1.1 83705 c.1.8.1 83706 1mvoA 136 1.67e+00 c.23.1.1 79513 1h3fA 432 1.99e+00 c.26.1.1 76631 d.66.1.4 76632 1b16A 254 2.05e+00 1b16A c.2.1.2 29875 1q7bA 244 2.16e+00 c.2.1.2 -5826 1h72C 296 2.22e+00 d.14.1.5 60712 d.58.26.1 60713 1thtA 305 2.29e+00 1thtA c.69.1.13 34711 1fcjA 322 2.29e+00 1oasA c.79.1.1 35289 1fwkA 296 2.32e+00 1fwkA d.14.1.5 37576 d.58.26.1 39398 1qyiA 384 2.46e+00 unknown_sccs -6836 1vj0A 380 2.46e+00 b.35.1.2 -3697 c.2.1.1 -5721 1j4aA 333 2.49e+00 c.2.1.4 71502 c.23.12.1 71503 1gz6A 319 3.24e+00 c.2.1.2 76410 1e0tA 470 3.73e+00 1a49A b.58.1.1 27064 c.1.12.1 29292 c.49.1.1 33146 1ub0A 258 3.83e+00 c.72.1.2 88394 1d2nA 272 4.39e+00 1d2nA c.37.1.20 32428 1m1nB 522 4.51e+00 c.92.2.3 78418 1fp2A 352 4.76e+00 1fpxA a.4.5.29 59941 c.66.1.12 59942 1p0kA 349 4.95e+00 c.1.4.1 87648 1us5A 314 5.00e+00 c.94.1.1 -8686 1jmkC 230 5.18e+00 c.69.1.22 71747 1jj2L 194 5.52e+00 1ffkI d.12.1.2 63097 1bykA 255 5.93e+00 1bykA c.93.1.1 35706 1nv8A 284 6.04e+00 c.66.1.30 86224 1cf9A 753 6.23e+00 1cf9A c.23.16.3 31441 e.5.1.1 42815 1luaA 287 6.26e+00 c.2.1.7 78216 c.58.1.4 78217 1iv3A 152 6.31e+00 d.79.5.1 76828 1bn7A 294 6.51e+00 1bn6A c.69.1.8 34677 3csuA 310 6.58e+00 3csuA c.78.1.1 35094 c.78.1.1 35095 1hyeA 313 6.67e+00 2cmd c.2.1.5 61400 d.162.1.1 61401 1vid 221 6.96e+00 1vid c.66.1.1 34178 1o1zA 234 6.97e+00 c.1.18.3 86555 4pfk 319 6.98e+00 3pfk c.89.1.1 35582 1nsf 273 7.06e+00 1d2nA c.37.1.20 32429 1dxy 333 7.16e+00 1dxy c.2.1.4 30094 c.23.12.1 31354 1hqsA 423 7.19e+00 1iso c.77.1.1 61154 1p4cA 380 7.48e+00 c.1.4.1 -5201 1p2fA 220 7.60e+00 a.4.6.1 87720 c.23.1.1 87721 1omzA 293 7.79e+00 c.68.1.15 87093 1qysA 106 8.09e+00 unknown_sccs -13432 1o66A 275 8.18e+00 c.1.12.8 -5590 1p80A 753 8.29e+00 c.23.16.3 -6547 e.5.1.1 -11840 1h1dA 221 8.38e+00 c.66.1.1 83452 1uwcA 261 9.26e+00 c.69.1.17 -8352 1gpjA 404 9.40e+00 a.151.1.1 65451 c.2.1.7 65452 d.58.39.1 65453 1cg2A 393 9.69e+00 1cg2A c.56.5.4 33844 d.58.19.1 39360 1pg5A 299 9.75e+00 1ct9A 553 9.88e+00 1ct9A c.26.2.1 31616 d.153.1.1 41834 1jvbA 347 1.04e+01 b.35.1.2 77181 c.2.1.1 77182 1poiB 260 1.08e+01 1poiB unknown_sccs 34155 1r0vA 305 1.09e+01 c.52.2.1 -7572 c.52.2.1 -7573 d.75.1.1 -10344 1iirA 415 1.10e+01 1iirA c.87.1.5 62453 1p1jA 533 1.10e+01 c.2.1.3 87687 d.81.1.3 87688 1jclA 260 1.11e+01 c.1.10.1 66501 1qorA 327 1.13e+01 1qorA b.35.1.2 24766 c.2.1.1 29782 1dl5A 317 1.15e+01 1dl5A c.66.1.7 64720 d.197.1.1 64721 1k2yX 463 1.16e+01 c.84.1.1 68063 c.84.1.1 68064 c.84.1.1 68065 d.129.2.1 68066 1bgvA 449 1.19e+01 1k89 c.2.1.7 30217 c.58.1.1 33865 1b8oA 284 1.19e+01 1b8oA c.56.2.1 33762 1hrdA 449 1.22e+01 1k89 c.2.1.7 30219 c.58.1.1 33867 1p1xA 260 1.22e+01 1bg6 359 1.23e+01 1bg6 a.100.1.5 18810 c.2.1.6 30214 1fsz 372 1.24e+01 1fsz c.32.1.1 31750 d.79.2.1 39802 1t2dA 322 1.28e+01 c.2.1.5 -5920 d.162.1.1 -11487 1ta3B 303 1.29e+01 1lx7A 253 1.29e+01 c.56.2.1 74329 1geqA 248 1.30e+01 2tysA c.1.2.4 28589 1f3lA 321 1.34e+01 1g6q2 c.66.1.6 59630 1mb3A 124 1.37e+01 c.23.1.1 78907 1ughI 82 1.38e+01 1ugiA d.17.5.1 38133 1q0uA 219 1.41e+01 c.37.1.19 -7205 1rxyA 253 1.41e+01 c.56.2.1 -7834 1va4A 279 1.44e+01 1s1pA 331 1.45e+01 c.1.7.1 -5240 1q6oA 216 1.45e+01 c.1.2.3 -5162 1byrA 155 1.46e+01 1byrA d.136.1.1 41450 1cvrA 435 1.47e+01 1cvrA b.1.18.12 21949 c.17.1.2 31006 1kv8A 216 1.47e+01 c.1.2.3 73054 1jbeA 128 1.48e+01 3chy c.23.1.1 62845 1ldg 316 1.49e+01 1ceqA c.2.1.5 30165 d.162.1.1 42132 1bkjA 240 1.54e+01 1bkjA d.90.1.1 40243 1o0uA 429 1.60e+01 c.118.1.1 80743 1v3vA 333 1.61e+01 2dorA 311 1.62e+01 2dorA c.1.4.1 28593 1s6yA 450 1.64e+01 2pia 321 1.65e+01 2pia b.43.4.2 25663 c.25.1.2 31553 d.15.4.2 37704 1f37A 110 1.67e+01 1f37A c.47.1.11 33088 2cmd 312 1.67e+01 2cmd c.2.1.5 30135 d.162.1.1 42102 1rxxA 421 1.68e+01 unknown_sccs -10982 1mwxA 646 1.69e+01 d.17.4.5 79610 d.175.1.1 79611 e.3.1.1 79612 1g97A 459 1.74e+01 1fwyA b.81.1.4 60394 c.68.1.5 60395 1dusA 194 1.74e+01 1dusA c.66.1.4 34182 1jubA 311 1.82e+01 c.1.4.1 -5188 1vicA 262 1.84e+01 c.68.1.13 -8252 1jg1A 235 1.86e+01 c.66.1.7 66661 1heiA 451 1.87e+01 1heiA c.37.1.14 32463 c.37.1.14 32464 1v8fA 276 1.88e+01 c.26.1.4 -6618 1oz9A 150 1.91e+01 unknown_sccs -10588 1ih8A 271 1.91e+01 2nsyA c.26.2.1 62377 1kqpA 271 1.92e+01 c.26.2.1 72883 1vjqA 79 1.94e+01 unknown_sccs -13478 8abp 306 2.00e+01 8abp c.93.1.1 35647 1o5iA 249 2.03e+01 c.2.1.2 -5833 1b24A 188 2.05e+01 1b24A d.95.2.1 40573 d.95.2.1 40574 1ej0A 180 2.06e+01 1ej0A c.66.1.2 34179 4uagA 437 2.12e+01 4uagA c.5.1.1 30651 c.59.1.1 33952 c.72.2.1 34955 1ofuA 320 2.12e+01 c.32.1.1 86972 d.79.2.1 86973 1nriA 306 2.15e+01 c.80.1.3 86123 1nnlA 225 2.16e+01 c.108.1.4 85906 1onrA 316 2.18e+01 1onrA c.1.10.1 29169 1kq3A 376 2.21e+01 e.22.1.2 68790 1fs5A 266 2.22e+01 unknown_sccs 65044 2liv 344 2.23e+01 2liv c.93.1.1 35708 1pl8A 356 2.26e+01 b.35.1.2 -3716 c.2.1.1 -5740 1jhdA 396 2.27e+01 b.122.1.3 66712 c.26.1.5 66713 1byb 495 2.29e+01 1byb c.1.8.1 28790 1lam 484 2.32e+01 1lam c.56.5.3 33829 c.50.1.1 33166 1iibA 106 2.33e+01 1iibA c.44.2.1 32648 1gs5A 258 2.37e+01 c.73.1.2 70395 1xgsA 295 2.41e+01 1bn5 a.4.5.25 16216 d.127.1.1 41153 1dorA 311 2.41e+01 2dorA c.1.4.1 28595 1jbkA 195 2.46e+01 c.37.1.20 71631 1guzA 310 2.49e+01 c.2.1.5 65586 d.162.1.1 65587 1oi7A 288 2.51e+01 c.2.1.8 87049 c.23.4.1 87050 1i2oA 316 2.52e+01 1onrA c.1.10.1 61574 1gegA 256 2.52e+01 1ybvA c.2.1.2 29888 1q0pA 223 2.55e+01 c.62.1.1 -7979 1v8gA 329 2.60e+01 a.46.2.1 -953 c.27.1.1 -6644 1dbxA 158 2.63e+01 1dbuA d.116.1.1 40928 1fkx 349 2.69e+01 1a4mA c.1.9.1 29018 1ptf 88 2.75e+01 1ptf d.94.1.1 40549 1a62 130 2.76e+01 1a62 a.140.3.1 64708 b.40.4.5 64709 1viaA 175 2.78e+01 c.37.1.2 -7021 1pjqA 457 2.78e+01 c.2.1.11 -5904 c.90.1.1 -8611 e.37.1.1 -12004 1eudB 396 2.79e+01 2scuB c.23.4.1 31150 d.142.1.4 41571 3chy 128 2.85e+01 3chy c.23.1.1 31038 1cc1S 283 2.86e+01 2frvA e.19.1.1 43313 1c3pA 375 2.87e+01 1c3pA c.42.1.2 32606 1im8A 244 2.87e+01 c.66.1.14 66212 1lldA 319 2.88e+01 3ldh c.2.1.5 30177 d.162.1.1 42144 1bia 321 2.90e+01 1bia a.4.5.1 16083 b.34.1.1 24447 d.104.1.2 40787 1im5A 180 2.90e+01 unknown_sccs 66211 1p5dX 463 2.90e+01 c.84.1.1 -8554 c.84.1.1 -8555 c.84.1.1 -8556 d.129.2.1 -11029 1cqyA 99 2.91e+01 1b9zA b.3.1.1 22527 1rybA 212 2.92e+01 c.56.3.1 -7858 1a4mA 349 2.92e+01 1a4mA c.1.9.1 29014 1trb 320 2.95e+01 1trb c.3.1.5 30529 c.3.1.5 30530 1vhwA 253 3.06e+01 c.56.2.1 -7765 1ne2A 200 3.08e+01 c.66.1.32 85586 1v3hA 495 3.09e+01 1mkzA 172 3.11e+01 c.57.1.1 84998 1lhpA 312 3.11e+01 c.72.1.5 77960 1e58A 249 3.16e+01 1qhfA c.60.1.1 59262 1whsA 255 3.16e+01 1ivyA c.69.1.5 34649 1hdiA 413 3.16e+01 16pk c.86.1.1 60964 1ejbA 168 3.18e+01 1rvv1 c.16.1.1 59417 8pchA 220 3.23e+01 1cs8A 1ii5A 233 3.26e+01 c.94.1.1 62412 1r9lA 309 3.29e+01 c.94.1.1 -8700 1q6cA 495 3.30e+01 c.1.8.1 -5300 1rz3A 201 3.31e+01 c.37.1.6 -7048 1in6A 334 3.34e+01 1hqcA a.4.5.11 62601 c.37.1.20 62602 1jcfA 344 3.41e+01 c.55.1.1 62878 c.55.1.1 62879 1jsxA 207 3.42e+01 c.66.1.20 71846 1gxuA 91 3.45e+01 d.58.10.1 76378 1reqB 637 3.50e+01 1reqB c.1.19.1 29621 c.23.6.1 31248 1dmgA 225 3.55e+01 1dmgA c.22.1.1 31036 1n8fA 350 3.56e+01 c.1.10.4 85397 1p0fA 373 3.57e+01 b.35.1.2 87642 c.2.1.1 87643 1fnnA 389 3.58e+01 1fnnA a.4.5.11 16129 c.37.1.20 32426 1vjfA 180 3.65e+01 d.116.1.1 -10941 1ugiA 84 3.65e+01 1ugiA d.17.5.1 38125 1bi5A 389 3.66e+01 1bi5A c.95.1.2 35985 c.95.1.2 35986 1jljA 189 3.69e+01 c.57.1.1 63169 1ihcA 188 3.69e+01 1di6A c.57.1.1 62379 1sqgA 429 3.72e+01 1udc 338 3.74e+01 1xel c.2.1.2 29785 1d1gA 168 3.75e+01 1d1gA c.71.1.1 34889 1whtA 256 3.77e+01 1ivyA c.69.1.5 34646 1eqjA 511 3.79e+01 1ejjA c.105.1.1 59495 c.76.1.3 59496 1i88A 389 3.80e+01 c.95.1.2 66070 c.95.1.2 66071 1gypA 358 3.82e+01 1dssG c.2.1.3 30004 d.81.1.1 39919 1g8aA 227 3.86e+01 c.66.1.3 -8049 1isiA 265 3.87e+01 e.4.1.1 71394 1o9gA 250 3.89e+01 c.66.1.29 86692 1bg4 302 3.90e+01 1taxA c.1.8.3 28806 1u08A 386 3.92e+01 1gg1A 350 4.00e+01 1qr7A c.1.10.4 29187