# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1o5oA 221 7.67e-29 c.61.1.1 -7954 1bzyA 217 1.57e-28 1qk3A c.61.1.1 34071 1a3c 181 2.83e-27 1a3c c.61.1.1 34095 1cjbA 231 2.33e-25 1qk3A c.61.1.1 34079 1dkuA 317 1.50e-23 1dkuA c.61.1.2 34118 c.61.1.2 34119 1fsgA 233 9.34e-20 1qk3A c.61.1.1 34029 1bd3A 243 2.32e-19 1bd3A c.61.1.1 34098 1hgxA 183 7.24e-18 1tc1A c.61.1.1 34027 1tc1A 220 4.93e-15 1tc1A c.61.1.1 34083 1ecfA 504 2.10e-11 1ecfB c.61.1.1 34053 d.153.1.1 41820 1qb7A 236 5.07e-11 1qb7A c.61.1.1 34087 1l1qA 186 5.34e-11 c.61.1.1 77653 1g2qA 187 2.38e-09 c.61.1.1 65117 1o57A 291 6.48e-08 unknown_sccs -249 c.61.1.1 -7960 1opr 213 8.72e-08 1opr c.61.1.1 34091 1dqpA 230 1.86e-07 1dqnA c.61.1.1 34069 1oroA 213 2.88e-07 1opr c.61.1.1 34093 1dqnA 230 3.44e-07 1dqnA c.61.1.1 34067 1lh0A 213 7.75e-07 c.61.1.1 73896 1nulA 152 7.06e-05 1nulA c.61.1.1 34011 1dxy 333 9.32e-02 1dxy c.2.1.4 30094 c.23.12.1 31354 1thtA 305 1.08e-01 1thtA c.69.1.13 34711 1o58A 303 1.18e-01 c.79.1.1 -8503 1hqsA 423 1.76e-01 1iso c.77.1.1 61154 1jflA 228 3.45e-01 c.78.2.1 71656 c.78.2.1 71657 1heiA 451 3.61e-01 1heiA c.37.1.14 32463 c.37.1.14 32464 1nnlA 225 5.53e-01 c.108.1.4 85906 1lhpA 312 7.80e-01 c.72.1.5 77960 1j4aA 333 8.37e-01 c.2.1.4 71502 c.23.12.1 71503 1rovA 857 9.58e-01 a.119.1.1 -1656 b.12.1.1 -3034 1q1gA 276 9.73e-01 c.56.2.1 -7846 1i1jA 108 9.93e-01 1i1jA b.34.2.1 61531 1hdiA 413 1.08e+00 16pk c.86.1.1 60964 1mtzA 293 1.10e+00 c.69.1.7 79467 1fcjA 322 1.34e+00 1oasA c.79.1.1 35289 1us5A 314 1.36e+00 c.94.1.1 -8686 1o0uA 429 1.37e+00 c.118.1.1 80743 1ls1A 295 1.62e+00 a.24.13.1 78170 c.37.1.10 78171 1b74A 254 1.62e+00 1b74A c.78.2.1 35264 c.78.2.1 35265 1ewkA 490 1.66e+00 1ewkA c.93.1.1 35712 2ng1 293 1.97e+00 1ng1 a.24.13.1 16962 c.37.1.10 32273 1nsf 273 2.02e+00 1d2nA c.37.1.20 32429 1d2nA 272 2.05e+00 1d2nA c.37.1.20 32428 1pwhA 327 2.12e+00 c.79.1.1 -8524 1lc0A 294 2.23e+00 c.2.1.3 73823 d.81.1.4 73824 1snzA 344 2.30e+00 b.30.5.4 -3496 1qorA 327 2.41e+00 1qorA b.35.1.2 24766 c.2.1.1 29782 1trkA 680 2.65e+00 1trkA c.36.1.6 31804 c.36.1.10 31803 c.48.1.1 33090 1bi5A 389 2.92e+00 1bi5A c.95.1.2 35985 c.95.1.2 35986 1h72C 296 2.96e+00 d.14.1.5 60712 d.58.26.1 60713 1gpuA 680 3.00e+00 c.36.1.6 65455 c.36.1.10 65454 c.48.1.1 65456 1nriA 306 3.04e+00 c.80.1.3 86123 1fwkA 296 3.08e+00 1fwkA d.14.1.5 37576 d.58.26.1 39398 1q9iA 571 3.08e+00 a.138.1.3 -2051 c.3.1.4 -6041 d.168.1.1 -11607 1jmkC 230 3.30e+00 c.69.1.22 71747 1upaA 573 3.65e+00 c.31.1.3 -6745 c.36.1.5 -6903 c.36.1.9 -6943 1kssA 571 3.65e+00 a.138.1.3 72928 c.3.1.4 72929 d.168.1.1 72930 1uylA 236 3.65e+00 1bg6 359 3.76e+00 1bg6 a.100.1.5 18810 c.2.1.6 30214 1qyiA 384 3.83e+00 unknown_sccs -6836 1e39A 571 4.25e+00 1qjdA a.138.1.3 19694 c.3.1.4 30431 d.168.1.1 42314 1omzA 293 4.82e+00 c.68.1.15 87093 1pyfA 312 4.84e+00 c.1.7.1 -5251 1i88A 389 6.23e+00 c.95.1.2 66070 c.95.1.2 66071 1j0aA 325 6.84e+00 c.79.1.1 83871 1gcuA 295 7.57e+00 1gcuA c.2.1.3 30063 d.81.1.4 39978 1afwA 393 7.58e+00 1afwA c.95.1.1 35900 c.95.1.1 35901 1gpjA 404 7.81e+00 a.151.1.1 65451 c.2.1.7 65452 d.58.39.1 65453 1vk9A 151 8.02e+00 1r61A 207 8.31e+00 unknown_sccs -6086 1lnsA 763 8.53e+00 a.40.2.1 78101 b.18.1.13 78102 c.69.1.21 78103 1cc1S 283 8.60e+00 2frvA e.19.1.1 43313 1csn 298 8.82e+00 1csn d.144.1.7 41664 1m3kA 392 9.09e+00 c.95.1.1 78565 c.95.1.1 78566 1qflA 389 9.22e+00 1afwA c.95.1.1 35908 c.95.1.1 35909 1vi6A 208 9.34e+00 c.23.15.1 -6489 1fs5A 266 9.52e+00 unknown_sccs 65044 1l8fA 207 1.04e+01 b.52.1.1 84537 1cg2A 393 1.09e+01 1cg2A c.56.5.4 33844 d.58.19.1 39360 1e7lA 157 1.10e+01 1en7A a.140.4.1 64728 d.4.1.5 64729 1lzlA 323 1.12e+01 c.69.1.2 78306 1lurA 339 1.13e+01 b.30.5.4 84717 1m4tA 392 1.15e+01 c.95.1.1 78617 c.95.1.1 78618 1vjnA 220 1.16e+01 unknown_sccs -11458 1jm0A 50 1.21e+01 k.8.1.1 66870 1gklA 297 1.24e+01 c.69.1.2 65250 1vhtA 218 1.30e+01 c.37.1.1 -7004 1dl5A 317 1.30e+01 1dl5A c.66.1.7 64720 d.197.1.1 64721 1kqpA 271 1.32e+01 c.26.2.1 72883 1vhoA 346 1.32e+01 unknown_sccs -4283 c.56.5.4 -7893 6ldh 330 1.33e+01 3ldh c.2.1.5 30161 d.162.1.1 42128 1ug6A 431 1.36e+01 c.1.8.4 88490 1i2oA 316 1.44e+01 1onrA c.1.10.1 61574 1q7bA 244 1.44e+01 c.2.1.2 -5826 1augA 215 1.46e+01 1a2zA c.56.4.1 33798 1o7qA 289 1.50e+01 c.68.1.9 -8216 1huxA 270 1.53e+01 1huxA c.55.1.5 61278 1f06A 320 1.55e+01 1dapA c.2.1.3 59556 d.81.1.3 59557 1obdA 306 1.62e+01 d.143.1.1 86767 1onrA 316 1.64e+01 1onrA c.1.10.1 29169 1e0tA 470 1.66e+01 1a49A b.58.1.1 27064 c.1.12.1 29292 c.49.1.1 33146 1e58A 249 1.67e+01 1qhfA c.60.1.1 59262 1wdkC 390 1.71e+01 1p2fA 220 1.71e+01 a.4.6.1 87720 c.23.1.1 87721 1l2tA 235 1.77e+01 c.37.1.12 73514 1gx4A 289 1.78e+01 c.68.1.9 83362 1qb0A 211 1.82e+01 1c25 c.46.1.1 32699 1s0aA 429 1.84e+01 c.67.1.4 -8201 1k3pA 426 1.86e+01 a.103.1.1 77237 1rj9A 304 1.87e+01 a.24.13.1 -631 c.37.1.10 -7129 1va4A 279 1.89e+01 1apyB 141 1.91e+01 1apyB 1a2zA 220 1.93e+01 1a2zA c.56.4.1 33794 1p5dX 463 1.94e+01 c.84.1.1 -8554 c.84.1.1 -8555 c.84.1.1 -8556 d.129.2.1 -11029 1mwmA 320 1.95e+01 c.55.1.1 79580 c.55.1.1 79581 1ni9A 338 1.98e+01 e.7.1.2 85739 1nzoA 363 1.98e+01 b.105.1.1 -2933 e.3.1.1 -11784 1hdoA 206 2.00e+01 1he2A c.2.1.2 60965 1ppjC 379 2.05e+01 1bn7A 294 2.05e+01 1bn6A c.69.1.8 34677 1ih8A 271 2.07e+01 2nsyA c.26.2.1 62377 1a62 130 2.10e+01 1a62 a.140.3.1 64708 b.40.4.5 64709 1mv8A 436 2.13e+01 a.100.1.4 85128 c.2.1.6 85129 c.26.3.1 85130 1jp4A 308 2.17e+01 1jp4A e.7.1.1 63223 1h4pA 408 2.19e+01 c.1.8.3 -5314 1vhwA 253 2.24e+01 c.56.2.1 -7765 1qj5A 429 2.24e+01 1dtyA c.67.1.4 34493 1dljA 402 2.28e+01 1dliA a.100.1.4 18808 c.2.1.6 30212 c.26.3.1 31621 1uxy 340 2.30e+01 2mbr d.145.1.2 41748 d.146.1.1 41761 1itxA 419 2.34e+01 c.1.8.5 71425 d.26.3.1 71426 1whi 122 2.35e+01 1whi b.39.1.1 24810 1kjnA 157 2.36e+01 c.115.1.1 72614 1cqyA 99 2.39e+01 1b9zA b.3.1.1 22527 1a48 306 2.49e+01 1a48 d.143.1.1 41590 1jksA 294 2.66e+01 d.144.1.7 71710 1p1xA 260 2.71e+01 1vhcA 224 2.72e+01 c.1.10.1 -5488 1shyB 551 2.74e+01 1gpqA 135 2.77e+01 d.233.1.1 83295 1l8aA 886 2.78e+01 c.36.1.6 73678 c.36.1.10 73677 c.48.1.1 73679 1j5xA 342 2.88e+01 c.80.1.1 71591 1fcqA 350 2.89e+01 c.1.8.9 65006 1ohvA 472 2.91e+01 c.67.1.4 -8181 2dkb 433 3.05e+01 2dkb c.67.1.4 34438 1othA 321 3.11e+01 1othA c.78.1.1 35260 c.78.1.1 35261 1dm5A 315 3.21e+01 1avc a.65.1.1 18186 1pixA 587 3.31e+01 c.14.1.4 -6282 1byqA 228 3.32e+01 1yer d.122.1.1 41100 1owcA 427 3.36e+01 1s2wA 295 3.36e+01 c.1.12.7 -5577 1vicA 262 3.38e+01 c.68.1.13 -8252 1jbkA 195 3.38e+01 c.37.1.20 71631 1qf9A 194 3.39e+01 1zin c.37.1.1 31848 1hnjA 317 3.41e+01 1hn9A c.95.1.1 35969 c.95.1.1 35970 1q0uA 219 3.43e+01 c.37.1.19 -7205 1tedA 393 3.43e+01 1nw3A 416 3.45e+01 c.66.1.31 86288 1pgtA 210 3.49e+01 1pgtA a.45.1.1 17515 c.47.1.5 32809 1pymA 295 3.79e+01 1pymA c.1.12.7 29308 1jykA 254 3.83e+01 c.68.1.13 67458 5ukdA 194 3.83e+01 1zin c.37.1.1 31851 1o6lA 337 3.91e+01 d.144.1.7 81092 1n3bA 216 3.93e+01 c.37.1.1 79959 1nm2A 317 3.96e+01 c.19.1.1 80654 d.58.23.1 80655 1php 394 3.98e+01 16pk c.86.1.1 35452