Best Alignments for T0279

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1jr2A/T0279-1jr2A-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1jr2A/T0279-1jr2A-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 7.1138e-242.2109e-37 c.113.1.1
1pea/T0279-1pea-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1pea/T0279-1pea-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 2.7827e-031.8672e-06 1pea c.93.1.1
1ccwA/T0279-1ccwA-t2k-global-str2+CB_burial_14_7-2.2+1.8-adpstyle5.a2m 1ccwA/T0279-1ccwA-t2k-global-str2+CB_burial_14_7-2.2+1.8-adpstyle5.al 1.0732e-025.0094e-10 1be1 c.23.6.1
1dxy/T0279-1dxy-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1dxy/T0279-1dxy-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 1.4091e-021.0090e-05 1dxy c.2.1.4
c.23.12.1
1t6t1/T0279-1t6t1-t2k-global-str2+CB_burial_14_7-2.2+1.8-adpstyle5.a2m 1t6t1/T0279-1t6t1-t2k-global-str2+CB_burial_14_7-2.2+1.8-adpstyle5.al 1.6494e-021.2177e-08
1o1xA/T0279-1o1xA-t2k-local-str2+CB_burial_14_7-2.2+1.8-adpstyle5.a2m 1o1xA/T0279-1o1xA-t2k-local-str2+CB_burial_14_7-2.2+1.8-adpstyle5.al 2.1920e-022.8004e-07 c.121.1.1
1gca/T0279-1gca-t2k-global-str2+CB_burial_14_7-2.2+1.8-adpstyle5.a2m 1gca/T0279-1gca-t2k-global-str2+CB_burial_14_7-2.2+1.8-adpstyle5.al 3.2798e-022.1256e-15 1gca c.93.1.1
1m5tA/T0279-1m5tA-t2k-local-str2+CB_burial_14_7-2.2+1.8-adpstyle5.a2m 1m5tA/T0279-1m5tA-t2k-local-str2+CB_burial_14_7-2.2+1.8-adpstyle5.al 4.5048e-022.2656e-09 c.23.1.1
1mb3A/T0279-1mb3A-t2k-local-str2+CB_burial_14_7-2.2+1.8-adpstyle5.a2m 1mb3A/T0279-1mb3A-t2k-local-str2+CB_burial_14_7-2.2+1.8-adpstyle5.al 5.6524e-026.7087e-09 c.23.1.1
2lbp/T0279-2lbp-t2k-global-str2+CB_burial_14_7-2.2+1.8-adpstyle5.a2m 2lbp/T0279-2lbp-t2k-global-str2+CB_burial_14_7-2.2+1.8-adpstyle5.al 7.6091e-023.4215e-18 2liv c.93.1.1
1usgA/T0279-1usgA-t2k-global-str2+CB_burial_14_7-2.2+1.8-adpstyle5.a2m 1usgA/T0279-1usgA-t2k-global-str2+CB_burial_14_7-2.2+1.8-adpstyle5.al 7.9382e-022.4932e-20 c.93.1.1
1fp4A/T0279-1fp4A-t04-local-str2+CB_burial_14_7-2.2+1.8-adpstyle5.a2m 1fp4A/T0279-1fp4A-t04-local-str2+CB_burial_14_7-2.2+1.8-adpstyle5.al 7.9445e-028.6569e-15 c.92.2.3
1dcfA/T0279-1dcfA-t2k-local-str2+CB_burial_14_7-2.2+1.8-adpstyle5.a2m 1dcfA/T0279-1dcfA-t2k-local-str2+CB_burial_14_7-2.2+1.8-adpstyle5.al 8.9345e-026.0402e-08 1dcfA c.23.1.2
1jx6A/T0279-1jx6A-t04-local-str2+CB_burial_14_7-2.2+1.8-adpstyle5.a2m 1jx6A/T0279-1jx6A-t04-local-str2+CB_burial_14_7-2.2+1.8-adpstyle5.al 1.1043e-016.5972e-14 c.93.1.1
1reqA/T0279-1reqA-t04-global-str2+CB_burial_14_7-2.2+1.8-adpstyle5.a2m 1reqA/T0279-1reqA-t04-global-str2+CB_burial_14_7-2.2+1.8-adpstyle5.al 1.1667e-011.6853e-16 1reqA c.1.19.1
c.23.6.1
8abp/T0279-8abp-t04-local-str2+CB_burial_14_7-2.2+1.8-adpstyle5.a2m 8abp/T0279-8abp-t04-local-str2+CB_burial_14_7-2.2+1.8-adpstyle5.al 1.1998e-013.1952e-14 8abp c.93.1.1
1m1nA/T0279-1m1nA-t04-global-str2+CB_burial_14_7-2.2+1.8-adpstyle5.a2m 1m1nA/T0279-1m1nA-t04-global-str2+CB_burial_14_7-2.2+1.8-adpstyle5.al 1.2331e-014.3839e-16 c.92.2.3
1j4aA/T0279-1j4aA-t2k-global-str2+CB_burial_14_7-2.2+1.8-adpstyle5.a2m 1j4aA/T0279-1j4aA-t2k-global-str2+CB_burial_14_7-2.2+1.8-adpstyle5.al 1.3130e-017.8244e-17 c.2.1.4
c.23.12.1
1h1lA/T0279-1h1lA-t04-global-str2+CB_burial_14_7-2.2+1.8-adpstyle5.a2m 1h1lA/T0279-1h1lA-t04-global-str2+CB_burial_14_7-2.2+1.8-adpstyle5.al 1.4024e-018.0615e-18 c.92.2.3
1oi7A/T0279-1oi7A-t2k-global-str2+CB_burial_14_7-2.2+1.8-adpstyle5.a2m 1oi7A/T0279-1oi7A-t2k-global-str2+CB_burial_14_7-2.2+1.8-adpstyle5.al 1.4758e-012.8752e-15 c.2.1.8
c.23.4.1
1gudA/T0279-1gudA-t2k-global-str2+CB_burial_14_7-2.2+1.8-adpstyle5.a2m 1gudA/T0279-1gudA-t2k-global-str2+CB_burial_14_7-2.2+1.8-adpstyle5.al 1.5973e-011.9489e-17 c.93.1.1
1rpjA/T0279-1rpjA-t04-global-str2+CB_burial_14_7-2.2+1.8-adpstyle5.a2m 1rpjA/T0279-1rpjA-t04-global-str2+CB_burial_14_7-2.2+1.8-adpstyle5.al 1.7064e-014.1881e-17 2dri c.93.1.1
1jdpA/T0279-1jdpA-t2k-global-str2+CB_burial_14_7-2.2+1.8-adpstyle5.a2m 1jdpA/T0279-1jdpA-t2k-global-str2+CB_burial_14_7-2.2+1.8-adpstyle5.al 2.0249e-011.4897e-18 c.93.1.1
1o5iA/T0279-1o5iA-t2k-local-str2+CB_burial_14_7-2.2+1.8-adpstyle5.a2m 1o5iA/T0279-1o5iA-t2k-local-str2+CB_burial_14_7-2.2+1.8-adpstyle5.al 2.4754e-016.1845e-08 c.2.1.2
1a53/T0279-1a53-t04-local-str2+CB_burial_14_7-2.2+1.8-adpstyle5.a2m 1a53/T0279-1a53-t04-local-str2+CB_burial_14_7-2.2+1.8-adpstyle5.al 3.7212e-015.1082e-07 1a53 c.1.2.4

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001