PFRMAT RR TARGET T0279 AUTHOR 4204-4258-2837 REMARK From group SAM-TO4-hand under the direction of REMARK Kevin Karplus. REMARK Project by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network METHOD using 280 inputs. METHOD Input includes separation and sequence length, corrected METHOD mutual information between columns (M. Cline) and METHOD an e-value measure of correlation between columns (K Karplus) METHOD NN: /projects/compbio/experiments/protein-predict/casp6/networks/NN280-240n300.net.28 METHOD Other inputs are from alignments and METHOD secondary predictions from SAM-t2k and SAM-t04 of METHOD University of California, Santa Cruz MODEL 1 MRRLEEDAVRVAYAGLRRKEAFKALAEKLGFTPLLFPVQATEKVPVPEYR DQVRALAQGVDLFLATTGVGVRDLLEAGKALGLDLEGPLAKAFRLARGAK AARALKEAGLPPHAVGDGTSKSLLPLLPQGRGVAALQLYGKPLPLLENAL AERGYRVLPLMPYRHLPDPEGILRLEEALLRGEVDALAFVAAIQVEFLFE GAKDPKALREALNTRVKALAVGRVTADALREWGVKPFYVDETERLGSLLQ GFKRALQKEVA 165 193 0 8 0.8092 138 192 0 8 0.8092 68 139 0 8 0.799 67 221 0 8 0.77265 66 220 0 8 0.7565 189 225 0 8 0.74545 97 194 0 8 0.7429 139 192 0 8 0.73865 97 138 0 8 0.7361 67 137 0 8 0.7242 97 139 0 8 0.7225 68 245 0 8 0.71995 67 194 0 8 0.7174 66 221 0 8 0.7174 192 228 0 8 0.7157 165 192 0 8 0.71315 66 97 0 8 0.7072 66 137 0 8 0.70295 67 97 0 8 0.6987 22 190 0 8 0.697 68 138 0 8 0.69105 193 224 0 8 0.68765 65 221 0 8 0.68765 62 225 0 8 0.6868 62 95 0 8 0.6766 195 222 0 8 0.6749 66 222 0 8 0.6749 94 113 0 8 0.6732 13 96 0 8 0.6698 194 221 0 8 0.6681 70 136 0 8 0.6664 70 195 0 8 0.6596 14 194 0 8 0.6596 67 101 0 8 0.6562 66 225 0 8 0.6562 65 74 0 8 0.6562 14 138 0 8 0.65025 121 143 0 8 0.64685 165 243 0 8 0.64515 67 138 0 8 0.64345 139 193 0 8 0.6392 139 194 0 8 0.6375 97 137 0 8 0.63155 38 98 0 8 0.62985 67 245 0 8 0.62815 18 69 0 8 0.62815 62 194 0 8 0.6256 165 194 0 8 0.6222 97 192 0 8 0.6222 67 78 0 8 0.61795 65 137 0 8 0.61795 137 195 0 8 0.6137 66 120 0 8 0.6137 14 97 0 8 0.6137 141 165 0 8 0.60775 67 139 0 8 0.60775 165 224 0 8 0.59925 65 222 0 8 0.59925 62 94 0 8 0.595 145 165 0 8 0.59245 35 195 0 8 0.59245 134 190 0 8 0.5882 62 134 0 8 0.5882 35 194 0 8 0.5882 218 229 0 8 0.58395 120 138 0 8 0.58395 97 221 0 8 0.5814 39 67 0 8 0.5814 74 225 0 8 0.5797 31 62 0 8 0.5797 165 225 0 8 0.57715 74 189 0 8 0.57715 142 224 0 8 0.57545 120 194 0 8 0.56865 74 222 0 8 0.56865 74 179 0 8 0.56865 98 194 0 8 0.5661 69 245 0 8 0.5661 39 194 0 8 0.56185 97 191 0 8 0.5593 69 118 0 8 0.55675 39 97 0 8 0.55675 137 189 0 8 0.55505 96 195 0 8 0.55505 41 69 0 8 0.55505 137 225 0 8 0.5525 69 139 0 8 0.5525 68 97 0 8 0.54995 14 139 0 8 0.54995 195 220 0 8 0.5406 143 224 0 8 0.5338 137 192 0 8 0.5338 120 221 0 8 0.53125 160 219 0 8 0.52615 66 245 0 8 0.52615 138 193 0 8 0.5236 137 162 0 8 0.5236 95 190 0 8 0.5219 22 195 0 8 0.5168 68 193 0 8 0.51425 193 244 0 8 0.50915 195 221 0 8 0.5066 35 190 0 8 0.5066 192 224 0 8 0.50235 67 193 0 8 0.50235 74 195 0 8 0.4998 62 96 0 8 0.4998 140 165 0 8 0.49725 96 221 0 8 0.4947 189 220 0 8 0.4845 146 186 0 8 0.4845 136 190 0 8 0.4845 62 165 0 8 0.4845 120 137 0 8 0.48195 97 193 0 8 0.4794 33 160 0 8 0.4794 74 137 0 8 0.47685 70 245 0 8 0.47685 66 195 0 8 0.47685 66 101 0 8 0.47685 124 165 0 8 0.47175 13 184 0 8 0.47175 41 138 0 8 0.46665 193 203 0 8 0.4641 187 221 0 8 0.46155 78 97 0 8 0.46155 65 218 0 8 0.46155 142 193 0 8 0.459 120 165 0 8 0.459 41 120 0 8 0.459 193 225 0 8 0.4539 69 138 0 8 0.4539 62 135 0 8 0.4539 194 223 0 8 0.45135 64 127 0 8 0.45135 14 143 0 8 0.45135 224 243 0 8 0.4488 189 224 0 8 0.4488 189 218 0 8 0.4488 14 195 0 8 0.44625 198 229 0 8 0.4437 189 222 0 8 0.4437 136 245 0 8 0.4437 137 221 0 8 0.44115 136 221 0 8 0.44115 70 137 0 8 0.44115 195 229 0 8 0.43945 193 221 0 8 0.43945 137 222 0 8 0.4318 136 202 0 8 0.4318 31 195 0 8 0.4318 222 245 0 8 0.42925 22 127 0 8 0.42925 14 101 0 8 0.42925 69 143 0 8 0.4267 195 225 0 8 0.4182 193 243 0 8 0.4182 165 222 0 8 0.4182 65 195 0 8 0.4182 39 192 0 8 0.4182 116 142 0 8 0.41565 22 194 0 8 0.41565 36 120 0 8 0.4131 60 234 0 8 0.41055 62 222 0 8 0.40885 15 138 0 8 0.40885 190 245 0 8 0.4063 175 194 0 8 0.4063 31 162 0 8 0.4063 165 223 0 8 0.40375 62 93 0 8 0.40375 190 224 0 8 0.39865 74 221 0 8 0.39865 62 226 0 8 0.39865 35 74 0 8 0.39865 22 31 0 8 0.39865 14 193 0 8 0.39865 186 195 0 8 0.3961 78 137 0 8 0.3961 31 70 0 8 0.391 127 229 0 8 0.38845 74 218 0 8 0.38845 67 162 0 8 0.38845 22 232 0 8 0.38845 11 160 0 8 0.38845 142 165 0 8 0.38335 138 165 0 8 0.3808 35 160 0 8 0.3808 193 240 0 8 0.37825 62 245 0 8 0.37825 194 224 0 8 0.3757 193 222 0 8 0.3757 119 243 0 8 0.3757 97 165 0 8 0.3757 95 115 0 8 0.3757 62 190 0 8 0.3757 35 115 0 8 0.37315 16 69 0 8 0.37315 221 236 0 8 0.3706 120 224 0 8 0.3706 41 165 0 8 0.3706 159 193 0 8 0.36805 139 161 0 8 0.36805 36 190 0 8 0.3655 15 224 0 8 0.3655 133 190 0 8 0.36295 124 145 0 8 0.36295 118 244 0 8 0.36295 135 165 0 8 0.3604 98 202 0 8 0.3604 68 119 0 8 0.3604 97 202 0 8 0.35785 97 190 0 8 0.35785 69 165 0 8 0.35785 68 137 0 8 0.35785 13 22 0 8 0.35785 161 193 0 8 0.3553 142 243 0 8 0.3553 141 224 0 8 0.3553 95 137 0 8 0.3553 38 74 0 8 0.3553 12 95 0 8 0.3553 74 94 0 8 0.35275 41 68 0 8 0.35275 221 245 0 8 0.3502 121 165 0 8 0.3502 69 194 0 8 0.3502 39 139 0 8 0.3502 14 67 0 8 0.3502 67 143 0 8 0.34765 39 62 0 8 0.34765 9 94 0 8 0.34765 141 193 0 8 0.34595 139 162 0 8 0.34595 138 224 0 8 0.34595 101 220 0 8 0.34595 67 192 0 8 0.34595 35 120 0 8 0.34595 22 35 0 8 0.34595 192 225 0 8 0.3434 118 243 0 8 0.3434 100 245 0 8 0.3434 62 224 0 8 0.3434 61 95 0 8 0.3434 36 136 0 8 0.3434 121 224 0 8 0.34085 62 137 0 8 0.34085 31 202 0 8 0.34085 138 243 0 8 0.3383 60 135 0 8 0.3383 22 229 0 8 0.3383 22 110 0 8 0.3383 147 243 0 8 0.33575 22 198 0 8 0.33575 11 96 0 8 0.33575 225 245 0 8 0.3332 22 95 0 8 0.3332 143 165 0 8 0.33065 119 139 0 8 0.33065 139 224 0 8 0.3281 62 188 0 8 0.3281 147 165 0 8 0.3264 12 202 0 8 0.3264 120 195 0 8 0.32385 98 190 0 8 0.32385 36 162 0 8 0.32385 22 136 0 8 0.32385 17 68 0 8 0.32385 36 222 0 8 0.3213 138 244 0 8 0.31875 62 138 0 8 0.31875 137 165 0 8 0.3162 113 244 0 8 0.3162 69 97 0 8 0.3162 38 221 0 8 0.3162 35 138 0 8 0.3162 15 243 0 8 0.3162 194 245 0 8 0.31195 120 192 0 8 0.31195 35 95 0 8 0.31195 39 162 0 8 0.3094 38 229 0 8 0.3094 13 190 0 8 0.3094 127 195 0 8 0.30685 101 135 0 8 0.30685 35 127 0 8 0.30685 69 115 0 8 0.3043 39 191 0 8 0.3026 137 245 0 8 0.30005 62 195 0 8 0.30005 18 193 0 8 0.30005 69 246 0 8 0.2975 22 188 0 8 0.2975 199 234 0 8 0.29495 114 193 0 8 0.29495 70 225 0 8 0.29495 69 95 0 8 0.29495 67 135 0 8 0.29495 41 95 0 8 0.29495 39 193 0 8 0.29495 159 192 0 8 0.29325 128 153 0 8 0.29325 101 139 0 8 0.29325 100 139 0 8 0.29325 31 44 0 8 0.29325 137 244 0 8 0.2907 120 136 0 8 0.2907 93 114 0 8 0.2907 15 193 0 8 0.2907 220 245 0 8 0.28815 113 193 0 8 0.28815 36 225 0 8 0.28815 224 245 0 8 0.28645 139 165 0 8 0.28645 134 229 0 8 0.28645 41 194 0 8 0.28645 39 143 0 8 0.28645 31 57 0 8 0.28645 165 245 0 8 0.2839 131 155 0 8 0.2839 68 194 0 8 0.2839 22 41 0 8 0.2839 14 244 0 8 0.2839 222 234 0 8 0.28135 73 134 0 8 0.28135 69 193 0 8 0.28135 39 165 0 8 0.28135 193 239 0 8 0.27965 38 189 0 8 0.27965 155 216 0 8 0.2771 140 161 0 8 0.2771 137 240 0 8 0.27455 96 184 0 8 0.27455 77 134 0 8 0.27455 18 41 0 8 0.27455 186 219 0 8 0.27285 140 193 0 8 0.27285 195 245 0 8 0.2703 147 245 0 8 0.2703 94 115 0 8 0.2703 38 225 0 8 0.2703 38 137 0 8 0.2703 36 186 0 8 0.2703 118 165 0 8 0.2686 94 245 0 8 0.2686 35 202 0 8 0.2686 223 243 0 8 0.26605 138 190 0 8 0.26605 69 137 0 8 0.26605 65 228 0 8 0.26605 57 220 0 8 0.26605 189 245 0 8 0.2635 162 229 0 8 0.2635 94 221 0 8 0.2635 138 245 0 8 0.2618 93 221 0 8 0.2618 66 165 0 8 0.2618 38 139 0 8 0.2618 14 120 0 8 0.2618 193 228 0 8 0.25925 162 221 0 8 0.25925 39 69 0 8 0.25925 86 165 0 8 0.25755 41 224 0 8 0.255 15 245 0 8 0.255 194 244 0 8 0.2533 168 197 0 8 0.2533 115 186 0 8 0.2533 35 192 0 8 0.2533 73 162 0 8 0.25075 22 224 0 8 0.25075 139 221 0 8 0.24905 138 202 0 8 0.24905 66 224 0 8 0.24905 147 224 0 8 0.2465 97 245 0 8 0.2465 95 134 0 8 0.2465 62 186 0 8 0.2465 57 105 0 8 0.2465 62 101 0 8 0.2448 31 115 0 8 0.24225 18 245 0 8 0.24225 137 224 0 8 0.24055 34 237 0 8 0.24055 22 36 0 8 0.24055 18 138 0 8 0.24055 136 165 0 8 0.238 202 216 0 8 0.2363 193 245 0 8 0.2363 44 229 0 8 0.2363 13 245 0 8 0.2363 224 234 0 8 0.2346 186 249 0 8 0.2346 139 222 0 8 0.2346 18 165 0 8 0.2346 162 175 0 8 0.23205 92 105 0 8 0.23205 78 138 0 8 0.23205 44 162 0 8 0.23205 38 163 0 8 0.23205 218 245 0 8 0.23035 136 243 0 8 0.23035 133 162 0 8 0.23035 120 188 0 8 0.23035 67 202 0 8 0.23035 62 189 0 8 0.23035 36 139 0 8 0.23035 18 137 0 8 0.23035 13 23 0 8 0.2278 145 224 0 8 0.2261 141 161 0 8 0.2261 97 201 0 8 0.2261 36 165 0 8 0.2261 14 41 0 8 0.2261 161 243 0 8 0.2244 67 165 0 8 0.2244 22 165 0 8 0.2244 15 119 0 8 0.2244 100 224 0 8 0.22185 35 237 0 8 0.22185 23 33 0 8 0.22185 14 142 0 8 0.22185 145 192 0 8 0.22015 95 188 0 8 0.22015 67 244 0 8 0.22015 31 118 0 8 0.22015 15 41 0 8 0.22015 10 41 0 8 0.22015 101 120 0 8 0.21845 36 197 0 8 0.21845 193 229 0 8 0.21675 137 193 0 8 0.21675 127 224 0 8 0.21675 120 220 0 8 0.21675 194 243 0 8 0.2142 139 243 0 8 0.2142 95 114 0 8 0.2142 43 142 0 8 0.2142 165 220 0 8 0.2125 105 120 0 8 0.2125 95 116 0 8 0.2125 31 199 0 8 0.2125 13 62 0 8 0.2125 69 159 0 8 0.2108 57 97 0 8 0.2108 56 234 0 8 0.2108 41 115 0 8 0.2108 115 245 0 8 0.2091 95 244 0 8 0.2091 92 229 0 8 0.2091 41 145 0 8 0.2091 118 245 0 8 0.20655 39 78 0 8 0.20655 44 127 0 8 0.20485 44 69 0 8 0.20485 9 31 0 8 0.20485 114 165 0 8 0.20315 86 232 0 8 0.20315 35 245 0 8 0.20315 35 116 0 8 0.20315 35 118 0 8 0.20145 199 220 0 8 0.19975 41 143 0 8 0.19975 35 186 0 8 0.19975 14 68 0 8 0.19975 120 164 0 8 0.1972 115 194 0 8 0.1972 83 189 0 8 0.1972 70 102 0 8 0.1972 66 193 0 8 0.1972 62 116 0 8 0.1972 26 37 0 8 0.1972 14 224 0 8 0.1972 119 224 0 8 0.1955 165 221 0 8 0.1938 163 190 0 8 0.1938 146 224 0 8 0.1938 97 224 0 8 0.1938 44 245 0 8 0.1921 22 245 0 8 0.1921 18 224 0 8 0.1921 95 113 0 8 0.1904 218 232 0 8 0.1887 75 114 0 8 0.1887 194 228 0 8 0.187 139 245 0 8 0.187 120 245 0 8 0.187 62 232 0 8 0.187 192 243 0 8 0.1853 74 115 0 8 0.1853 69 240 0 8 0.1853 68 224 0 8 0.1853 39 73 0 8 0.1853 35 193 0 8 0.1853 94 195 0 8 0.1836 73 190 0 8 0.1836 68 244 0 8 0.1836 62 113 0 8 0.1836 35 228 0 8 0.1836 31 237 0 8 0.1836 14 69 0 8 0.1836 145 193 0 8 0.1819 121 164 0 8 0.1819 83 149 0 8 0.1819 39 163 0 8 0.1819 124 195 0 8 0.1802 66 145 0 8 0.1802 END