# List of top-scoring protein chains for T0278.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1w0fA 485 8.40e-60 1tqnA 486 8.49e-60 1pq2A 476 5.09e-56 a.104.1.1 -1470 1og5A 475 3.34e-55 a.104.1.1 86982 1r9oA 477 5.91e-55 1suoA 476 1.49e-54 1po5A 476 1.99e-54 a.104.1.1 -1467 1nr6A 473 6.29e-54 a.104.1.1 -1464 1bu7A 455 8.45e-46 1bu7A a.104.1.1 18937 1bvyA 458 8.47e-46 1bu7A a.104.1.1 18943 2hpdA 471 8.64e-46 1bu7A a.104.1.1 18939 1jpzA 473 8.77e-46 a.104.1.1 67069 1p0wA 455 1.84e-45 a.104.1.1 -1447 1p0xA 455 1.94e-45 a.104.1.1 -1449 1smiA 471 2.20e-45 1fahA 471 3.58e-45 1bu7A a.104.1.1 18945 1jmeA 455 3.59e-45 a.104.1.1 66885 1p0vA 455 8.96e-45 a.104.1.1 -1445 1n97A 389 2.72e-41 a.104.1.1 80335 1h5zA 455 4.46e-41 a.104.1.1 -1456 1u13A 455 6.42e-41 1jipA 403 8.27e-41 a.104.1.1 66748 1jioA 403 9.97e-41 a.104.1.1 66747 1eupA 403 4.10e-40 1rom a.104.1.1 18967 1odoA 408 1.03e-39 a.104.1.1 -1463 1gwiA 411 3.82e-39 a.104.1.1 76364 1ehgA 403 9.31e-38 1rom a.104.1.1 18956 1cmnA 402 9.49e-38 1rom a.104.1.1 18958 1ehfA 403 2.06e-37 1rom a.104.1.1 18957 1cmjA 402 2.10e-37 1rom a.104.1.1 18959 1jfbA 404 2.43e-37 a.104.1.1 66624 1gejA 403 2.45e-37 1rom a.104.1.1 18954 1cl6A 402 2.50e-37 1rom a.104.1.1 18960 1pkfA 419 2.82e-37 a.104.1.1 -1453 1q5dA 419 3.10e-37 a.104.1.1 -1454 1f25A 402 8.16e-37 1rom a.104.1.1 18952 1f24A 402 1.05e-36 1rom a.104.1.1 18953 1cpt 428 1.23e-36 1cpt a.104.1.1 18968 1f26A 402 1.85e-36 1rom a.104.1.1 18951 1uedA 406 1.03e-35 a.104.1.1 -1459 1lfkA 398 1.06e-33 a.104.1.1 77926 1io7A 368 6.60e-33 1f4tA a.104.1.1 18971 1io8A 368 6.70e-33 1f4tA a.104.1.1 62618 1ue8A 367 1.32e-30 1t85A 414 8.57e-29 1c8jA 414 9.73e-29 1phd a.104.1.1 59085 1j51A 414 1.04e-28 a.104.1.1 66393 1qmqA 414 1.36e-28 1phd a.104.1.1 18907 1p2yA 420 1.43e-28 a.104.1.1 -1443 1phb 414 1.43e-28 1phd a.104.1.1 18906 1gekA 415 1.44e-28 1phd a.104.1.1 18915 1lwlA 417 1.44e-28 a.104.1.1 78273 1iwjA 415 1.61e-28 a.104.1.1 71489 1dz4A 414 1.73e-28 1phd a.104.1.1 18903 6cp4 414 3.40e-28 1phd a.104.1.1 18924 1iwkA 415 3.55e-28 a.104.1.1 71490 2cp4 414 5.93e-28 1phd a.104.1.1 18933 1gebA 415 1.42e-27 1phd a.104.1.1 18932 1izoA 417 1.54e-26 a.104.1.1 83851 1n40A 396 4.55e-26 a.104.1.1 79977 1fs9A 507 6.53e-02 1qdbA a.138.1.3 19693 1fs7A 485 2.76e-01 1qdbA a.138.1.3 19691 2cb5A 453 6.26e-01 3gcb d.3.1.1 37035 1cb5A 453 6.65e-01 3gcb d.3.1.1 37037 1uikA 418 8.46e-01 1cjyA 749 1.10e+00 1rlw b.7.1.1 23178 c.19.1.2 34986 1vhqA 232 1.11e+00 c.23.16.2 -6514 1uijA 416 2.62e+00 1gr0A 367 3.95e+00 c.2.1.3 70379 d.81.1.3 70380 1ipkA 416 4.47e+00 b.82.1.2 71264 b.82.1.2 71265 1oy1A 228 5.23e+00 c.23.16.2 87548 1o1zA 234 6.62e+00 c.1.18.3 86555 1jsyA 418 6.62e+00 b.1.18.11 71847 b.1.18.11 71848 1t5lA 658 9.64e+00 1ipjA 416 9.78e+00 b.82.1.2 71258 b.82.1.2 71259 1odmA 331 1.01e+01 b.82.2.1 86875 1uzbA 516 1.06e+01 c.82.1.1 -8552 3ladA 476 1.10e+01 1lvl c.3.1.5 30573 c.3.1.5 30574 d.87.1.1 40208 1jd3A 164 1.10e+01 1fw9A d.190.1.1 62896 1jlvA 209 1.19e+01 a.45.1.1 71729 c.47.1.5 71730 1cs0A 1073 1.27e+01 a.92.1.1 18558 c.24.1.1 31487 c.30.1.1 31673 c.30.1.1 31674 d.142.1.2 41518 d.142.1.2 41519 1jf0A 195 1.31e+01 1ej3A a.39.1.5 62926 7aatA 401 1.36e+01 1ajsA c.67.1.1 34250 1mho 88 1.48e+01 1b4cA a.39.1.2 17171 1a9xA 1073 1.49e+01 a.92.1.1 18550 c.24.1.1 31479 c.30.1.1 31657 c.30.1.1 31658 d.142.1.2 41502 d.142.1.2 41503 1gcb 454 1.51e+01 3gcb d.3.1.1 37034 1iq0A 592 1.53e+01 a.27.1.1 66257 c.26.1.1 66258 d.67.2.1 66259 1m6vA 1073 1.54e+01 a.92.1.1 74536 c.24.1.1 74537 c.30.1.1 74538 c.30.1.1 74539 d.142.1.2 74540 d.142.1.2 74541 1d9zA 657 1.59e+01 1d2mA c.37.1.19 32421 c.37.1.19 32422 1akaA 401 1.62e+01 1ajsA c.67.1.1 34258 1m1cA 680 1.68e+01 e.42.1.1 78395 1oiwA 191 1.77e+01 c.37.1.8 -7076 1dbhA 354 1.80e+01 1awe a.87.1.1 18514 b.55.1.1 26967 1d9xA 658 1.81e+01 1d2mA c.37.1.19 32419 c.37.1.19 32420 1sr9A 644 1.81e+01 1g7sA 594 1.90e+01 1g7rA b.43.3.1 25712 b.43.3.1 25713 c.20.1.1 31032 c.37.1.8 32147 1fcqA 350 1.91e+01 c.1.8.9 65006 1fw9A 164 1.94e+01 1fw9A d.190.1.1 60059 1a6r 471 1.96e+01 3gcb d.3.1.1 37033 3gcb 470 1.96e+01 3gcb d.3.1.1 37032 1o5wA 534 1.97e+01 c.3.1.2 -6025 d.16.1.5 -9245 1g4mA 393 2.04e+01 b.1.18.11 65143 b.1.18.11 65144 1t4cA 427 2.05e+01 1p5hA 428 2.06e+01 c.123.1.1 87802 1vgrA 427 2.08e+01 1psbA 91 2.13e+01 a.39.1.2 -818 1l8qA 324 2.13e+01 a.4.12.2 77809 c.37.1.20 77810 1dguA 183 2.14e+01 1dguA a.39.1.5 17333 1e8cA 498 2.14e+01 c.98.1.1 59377 c.59.1.1 59378 c.72.2.1 59379 1cfpA 92 2.15e+01 1b4cA a.39.1.2 17172 1gytA 503 2.15e+01 c.56.5.3 70766 c.50.1.1 70765 1vgqA 427 2.16e+01 1ce2A 689 2.20e+01 1cb6A c.94.1.2 35861 c.94.1.2 35862 1t4cB 427 2.24e+01 2ts1 419 2.27e+01 2ts1 c.26.1.1 31564 1ctm 250 2.44e+01 1hcz b.2.6.1 22465 b.84.2.2 28251 1t3zA 427 2.46e+01 1g81A 164 2.58e+01 1fw9A d.190.1.1 60336 1mq1A 91 2.62e+01 a.39.1.2 79392 1hcz 252 2.62e+01 1hcz b.2.6.1 22464 b.84.2.2 28250 1uwoB 92 2.65e+01 4icb a.39.1.2 17175 1bd0A 388 2.67e+01 1bd0A b.49.2.2 26480 c.1.6.1 28642 1oahA 519 2.68e+01 a.138.1.3 86736 1mrzA 293 2.70e+01 b.43.5.1 -4048 c.26.1.3 -6616 1lqtA 456 2.71e+01 c.3.1.1 74198 c.4.1.1 74199 1qhtA 775 2.75e+01 1tgoA c.55.3.5 33722 e.8.1.1 43011 1g1bA 164 2.80e+01 1fw9A d.190.1.1 60202 1ftxA 387 2.84e+01 b.49.2.2 76191 c.1.6.1 76192 2sfpA 388 2.86e+01 1bd0A b.49.2.2 26484 c.1.6.1 28646 1se0A 116 3.09e+01 g.52.1.1 -12841 1q1lA 401 3.49e+01 unknown_sccs -11166 1dtyA 429 3.50e+01 1dtyA c.67.1.4 34495 1hqmA 313 3.51e+01 i.8.1.1 45972 1bgxT 832 3.56e+01 1taq a.60.7.1 18083 c.120.1.2 33353 c.55.3.5 33699 e.8.1.1 42992 1i6vA 314 3.57e+01 d.74.3.1 61852 d.181.1.1 61853 1oivA 191 3.58e+01 c.37.1.8 -7074 1cm8A 367 3.61e+01 1hcl d.144.1.7 41651 1nnvA 110 3.63e+01 unknown_sccs -9309 1gvfA 286 3.64e+01 c.1.10.2 70599 1nylA 539 3.64e+01 b.53.1.2 80741 c.26.1.1 80742 1f9bA 695 3.67e+01 1cb6A c.94.1.2 35869 c.94.1.2 35870 1nhcA 336 3.68e+01 b.80.1.3 -4768 1yrgA 385 3.68e+01 1yrgA c.10.1.2 30854 1k5dC 386 3.72e+01 c.10.1.2 68170 1iw7A 315 3.74e+01 d.74.3.1 71470 d.181.1.1 71471 1vizA 240 3.74e+01 c.1.4.1 -5212 1jw1A 689 3.77e+01 c.94.1.2 84234 c.94.1.2 84235 1b4cA 92 3.85e+01 1b4cA a.39.1.2 17169 1q8yA 373 3.91e+01 d.144.1.7 -11319 1howA 373 3.91e+01 1hcl d.144.1.7 41679 1taq 832 3.92e+01 1taq a.60.7.1 18082 c.120.1.2 33352 c.55.3.5 33698 e.8.1.1 42991 1gz3A 554 3.95e+01 c.2.1.7 83393 c.58.1.3 83394 1fp3A 402 4.00e+01 1fp3A a.102.1.3 18842