# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1tqnA 486 1.40e-50 1nr6A 473 1.27e-47 a.104.1.1 -1464 1n6bA 473 2.02e-47 a.104.1.1 85359 1dt6A 473 3.69e-47 1dt6A a.104.1.1 18977 1po5A 476 8.46e-46 a.104.1.1 -1467 1bu7A 455 1.27e-41 1bu7A a.104.1.1 18937 2bmhA 455 1.54e-41 1bu7A a.104.1.1 18941 1jpzA 473 5.13e-41 a.104.1.1 67069 1jmeA 455 3.46e-40 a.104.1.1 66885 1ea1A 455 1.08e-38 1ea1A a.104.1.1 18970 1jipA 403 1.19e-38 a.104.1.1 66748 1oxa 403 1.61e-38 1f4tA a.104.1.1 18965 1e9xA 455 2.12e-38 1ea1A a.104.1.1 18969 1eupA 403 4.45e-38 1rom a.104.1.1 18967 1n97A 389 8.72e-38 a.104.1.1 80335 1u13A 455 9.08e-38 1h5zA 455 1.10e-37 a.104.1.1 -1456 1odoA 408 9.55e-37 a.104.1.1 -1463 1gwiA 411 3.11e-36 a.104.1.1 76364 1cmnA 402 1.36e-35 1rom a.104.1.1 18958 1rom 403 2.42e-35 1rom a.104.1.1 18963 1jfbA 404 3.27e-35 a.104.1.1 66624 1cpt 412 5.07e-35 1cpt a.104.1.1 18968 1f24A 402 7.65e-35 1rom a.104.1.1 18953 1q5dA 419 3.50e-34 a.104.1.1 -1454 1uedA 406 1.35e-32 a.104.1.1 -1459 1lfkA 398 3.20e-31 a.104.1.1 77926 1f4tA 368 5.44e-30 1f4tA a.104.1.1 18973 1io7A 368 5.79e-30 1f4tA a.104.1.1 18971 1dz4A 414 1.03e-29 1phd a.104.1.1 18903 1qmqA 414 1.03e-29 1phd a.104.1.1 18907 1phd 414 1.24e-29 1phd a.104.1.1 18913 5cpp 414 1.26e-29 1phd a.104.1.1 18935 1phb 414 1.33e-29 1phd a.104.1.1 18906 1phg 414 1.64e-29 1phd a.104.1.1 18910 1izoA 417 1.73e-28 a.104.1.1 83851 1n40A 396 1.32e-27 a.104.1.1 79977 7aatA 401 3.08e-01 1ajsA c.67.1.1 34250 1jf0A 195 4.04e-01 1ej3A a.39.1.5 62926 1jf2A 195 1.48e+00 1ej3A a.39.1.5 62930 1rpa 342 1.89e+00 1cviA c.60.1.2 33983 1c7nA 399 2.37e+00 1d2fA c.67.1.3 34413 1v97A 1332 3.87e+00 1ej3A 191 4.31e+00 1ej3A a.39.1.5 17259 1nktA 922 5.25e+00 a.162.1.1 85830 a.172.1.1 85831 c.37.1.19 85832 c.37.1.19 85833 1fo4A 1332 5.61e+00 a.56.1.1 17910 d.15.4.2 37695 d.41.1.1 38586 d.87.2.1 40227 d.133.1.1 41416 d.145.1.3 41758 2hpaA 342 6.42e+00 1cviA c.60.1.2 33985 1o1zA 234 6.76e+00 c.1.18.3 86555 1rlr 761 6.91e+00 1rlr a.98.1.1 18753 c.7.1.2 30679 1el4A 195 7.19e+00 1ej3A a.39.1.5 59453 1h38D 883 7.54e+00 e.8.1.3 76628 1dkqA 410 8.13e+00 1dklA c.60.1.2 33998 1pa1A 310 8.33e+00 c.45.1.2 -7332 1dklA 410 8.59e+00 1dklA c.60.1.2 33996 1cviA 342 9.20e+00 1cviA c.60.1.2 33989 1mkeA 152 9.57e+00 b.55.1.4 79231 1ka2A 499 1.01e+01 d.92.1.5 77305 1qdlA 422 1.04e+01 1qdlA d.161.1.1 42088 1ntyA 311 1.07e+01 1o7xD 377 1.14e+01 a.103.1.1 81174 1qv1A 195 1.15e+01 a.39.1.5 -830 1j0mA 752 1.16e+01 a.102.3.2 83910 b.24.1.1 83911 b.30.5.2 83912 1uwoA 92 1.23e+01 4icb a.39.1.2 17174 1h38B 883 1.23e+01 e.8.1.3 76626 1h38C 883 1.24e+01 e.8.1.3 76627 1lfpA 249 1.27e+01 e.39.1.1 73885 1bk0 331 1.29e+01 1bk0 b.82.2.1 28118 1fcqA 350 1.32e+01 c.1.8.9 65006 1qqjA 419 1.41e+01 1qcnA b.34.8.1 59034 d.177.1.1 59035 1fnmA 691 1.44e+01 1dar b.43.3.1 25709 c.37.1.8 32144 d.14.1.1 37546 d.58.11.1 39302 d.58.11.1 39303 1nd6A 354 1.48e+01 c.60.1.2 80407 1o0wA 252 1.54e+01 a.149.1.1 80751 d.50.1.1 80752 1o7xC 377 1.55e+01 a.103.1.1 81173 1uirA 314 1.57e+01 c.66.1.17 -8114 1odmA 331 1.59e+01 b.82.2.1 86875 1t7pA 698 1.64e+01 1t7pA c.55.3.5 33712 e.8.1.1 43005 1qcnA 421 1.67e+01 1qcnA b.34.8.1 59017 d.177.1.1 59018 1mswD 883 1.69e+01 e.8.1.3 79427 1dar 691 1.74e+01 1dar b.43.3.1 25707 c.37.1.8 32142 d.14.1.1 37547 d.58.11.1 39300 1o7xB 377 1.78e+01 a.103.1.1 81172 1qhtA 775 1.83e+01 1tgoA c.55.3.5 33722 e.8.1.1 43011 1hyoA 421 1.83e+01 1qcnA b.34.8.1 59001 d.177.1.1 59002 1qcoA 423 1.84e+01 1qcnA b.34.8.1 59021 d.177.1.1 59022 1oxxK 353 1.85e+01 b.40.6.3 -3969 c.37.1.12 -7187 1xikA 375 1.85e+01 1xikA a.25.1.2 16784 1ornA 226 1.86e+01 a.96.1.1 87342 1a7cA 379 2.00e+01 1sek e.1.1.1 42660 1t4bA 367 2.00e+01 1gzqA 300 2.03e+01 b.1.1.2 70818 d.19.1.1 70819 1iqpA 327 2.17e+01 a.80.1.1 62649 c.37.1.20 62650 1s48A 609 2.18e+01 e.8.1.4 -11955 1mho 88 2.28e+01 1b4cA a.39.1.2 17171 1aa7A 158 2.30e+01 1aa7A a.95.1.1 18741 1oxsC 353 2.32e+01 b.40.6.3 87519 c.37.1.12 87520 1ile 821 2.37e+01 1ile a.27.1.1 16924 b.51.1.1 26889 c.26.1.1 31591 1jubA 311 2.37e+01 c.1.4.1 -5188 2dorA 311 2.38e+01 2dorA c.1.4.1 28593 1bxrA 1073 2.40e+01 a.92.1.1 18570 c.24.1.1 31499 c.30.1.1 31697 c.30.1.1 31698 d.142.1.2 41542 d.142.1.2 41543 1o0xA 262 2.46e+01 d.127.1.1 80755 1gntA 553 2.47e+01 e.26.1.1 70290 3bct 457 2.50e+01 3bct a.118.1.1 19112 1ni3A 392 2.54e+01 c.37.1.8 80531 d.15.10.2 80532 1dorA 311 2.71e+01 2dorA c.1.4.1 28595 1914 232 2.72e+01 1914 d.49.1.1 83028 d.49.1.1 83029 1ex1A 605 2.84e+01 1ex1A c.1.8.7 29013 c.23.11.1 31347 1iomA 377 2.85e+01 a.103.1.1 83698 1ea3A 164 2.87e+01 1aa7A a.95.1.1 59398 1uekA 275 2.94e+01 d.14.1.5 88483 d.58.26.5 88484 1e1dA 553 2.95e+01 1e1dA e.26.1.1 43363 1kdkA 177 2.99e+01 b.29.1.4 72351 1xyzA 347 3.00e+01 1taxA c.1.8.3 28804 1kz1A 159 3.27e+01 c.16.1.1 73318 1tx4A 198 3.28e+01 1tx4A a.116.1.1 19098 1g4wR 383 3.32e+01 1g4uS a.24.11.1 16644 c.45.1.2 32692 1h2rL 534 3.36e+01 1h2rL e.18.1.1 43298 5nseA 444 3.36e+01 d.174.1.1 74644 1ed5A 444 3.39e+01 1nseA d.174.1.1 42530 1ltm 320 3.45e+01 1ltm d.2.1.6 36992 1lwyA 324 3.55e+01 a.96.1.3 78285 d.129.1.2 78286 1ldjA 760 3.57e+01 a.4.5.34 73847 a.118.17.1 73848 e.40.1.1 73849 1keeC 1073 3.58e+01 a.92.1.1 68500 c.24.1.1 68501 c.30.1.1 68502 c.30.1.1 68503 d.142.1.2 68504 d.142.1.2 68505 1l8qA 324 3.60e+01 a.4.12.2 77809 c.37.1.20 77810 1nnvA 110 3.63e+01 unknown_sccs -9309 1t0qB 330 3.64e+01 1r0kA 388 3.67e+01 1auoA 218 3.69e+01 1auoA c.69.1.14 34716 1tml 286 3.69e+01 1tml c.6.1.1 30656 1h2aL 567 3.71e+01 1h2rL e.18.1.1 43299 1a26 361 3.77e+01 1a26 a.41.1.1 17412 d.166.1.2 42274 1efyA 350 3.81e+01 1a26 a.41.1.1 17413 d.166.1.2 42275 1lyxA 248 3.85e+01 c.1.1.1 78304 1f8gA 384 3.96e+01 1sayA c.2.1.4 59695 c.23.12.2 59696 1e2uA 553 4.00e+01 1e1dA e.26.1.1 43362