# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1tqnA 486 1.30e-32 1po5A 476 4.98e-31 a.104.1.1 -1467 1jpzA 473 6.83e-28 a.104.1.1 67069 1bu7A 455 1.20e-27 1bu7A a.104.1.1 18937 1n97A 389 2.13e-26 a.104.1.1 80335 1e9xA 455 7.63e-24 1ea1A a.104.1.1 18969 1h5zA 455 1.66e-23 a.104.1.1 -1456 1u13A 455 4.09e-23 1jipA 403 9.14e-18 a.104.1.1 66748 1eupA 403 1.76e-17 1rom a.104.1.1 18967 1q5dA 419 2.18e-17 a.104.1.1 -1454 1odoA 408 3.26e-17 a.104.1.1 -1463 1cpt 412 3.51e-17 1cpt a.104.1.1 18968 1gwiA 411 5.94e-17 a.104.1.1 76364 1uedA 406 1.18e-16 a.104.1.1 -1459 1jfbA 404 2.25e-16 a.104.1.1 66624 1izoA 417 2.33e-16 a.104.1.1 83851 1f24A 402 4.33e-16 1rom a.104.1.1 18953 1io7A 368 2.23e-15 1f4tA a.104.1.1 18971 1lfkA 398 9.05e-15 a.104.1.1 77926 1qmqA 414 6.72e-14 1phd a.104.1.1 18907 1dz4A 414 2.28e-13 1phd a.104.1.1 18903 1n40A 396 1.99e-11 a.104.1.1 79977 1gnlA 544 1.92e-01 e.26.1.1 70287 1pjr 724 4.40e-01 1pjr c.37.1.19 32391 c.37.1.19 32392 1h3fA 432 1.40e+00 c.26.1.1 76631 d.66.1.4 76632 1cb8A 678 1.74e+00 1cb8A a.102.3.2 18849 b.24.1.1 23898 b.30.5.2 24422 1hl9A 449 2.10e+00 unknown_sccs -4694 unknown_sccs -5365 1h2rL 534 2.37e+00 1h2rL e.18.1.1 43298 1uf2A 1019 2.76e+00 unknown_sccs -12036 1eswA 500 3.13e+00 1cwyA c.1.8.1 59500 1uruA 244 3.24e+00 unknown_sccs -13001 1ubkL 534 3.26e+00 e.18.1.1 88422 1n45A 233 3.78e+00 a.132.1.1 79981 1rkeA 262 3.99e+00 a.24.9.1 -582 a.24.9.1 -583 1mdbA 539 4.40e+00 e.23.1.1 79008 1muwA 386 4.47e+00 c.1.15.3 79495 1rlr 761 4.65e+00 1rlr a.98.1.1 18753 c.7.1.2 30679 1qusA 322 4.88e+00 1ltm d.2.1.6 36991 1jk0A 419 5.08e+00 a.25.1.2 63142 1gnxA 479 5.37e+00 c.1.8.4 76241 1rxxA 421 5.40e+00 unknown_sccs -10982 1r5lA 262 5.45e+00 a.5.3.1 -360 c.13.1.1 -6215 1e4mM 501 5.48e+00 1e70M c.1.8.4 59226 1p9bA 442 5.68e+00 c.37.1.10 -7115 1qq8A 214 5.83e+00 1qq8A 1qtqA 553 6.46e+00 1gtrA b.53.1.2 26940 c.26.1.1 31579 1nxcA 478 6.88e+00 a.102.2.1 -1333 1fs7A 485 6.95e+00 1qdbA a.138.1.3 19691 1gnwA 211 7.31e+00 1gnwA a.45.1.1 17727 c.47.1.5 33021 2myr 501 7.80e+00 1lt8A 406 8.03e+00 c.1.26.1 78186 1e2uA 553 8.31e+00 1e1dA e.26.1.1 43362 1gntA 553 8.31e+00 e.26.1.1 70290 1t7pA 698 8.37e+00 1t7pA c.55.3.5 33712 e.8.1.1 43005 1gnd 447 8.38e+00 1gnd c.3.1.3 30423 d.16.1.6 37987 1s96A 219 8.71e+00 c.37.1.1 -6972 1gqeA 365 9.62e+00 e.38.1.1 70351 1iq8A 582 1.07e+01 b.122.1.1 83074 c.1.20.1 71270 d.17.6.1 83075 1o0wA 252 1.10e+01 a.149.1.1 80751 d.50.1.1 80752 1jb0A 755 1.10e+01 1jb0A f.29.1.1 62820 1j77A 209 1.11e+01 1j77A a.132.1.2 62674 1a8rA 221 1.12e+01 1a8rA d.96.1.1 40587 1j5sA 463 1.16e+01 c.1.9.8 71580 1f0kA 364 1.17e+01 1f0kA c.87.1.2 35465 2gwxA 267 1.22e+01 2prgA a.123.1.1 19323 1ps9A 671 1.23e+01 c.1.4.1 -5206 1toaA 313 1.24e+01 1toaA c.92.2.2 35598 1pxgA 382 1.25e+01 c.1.20.1 -5616 1d5tA 433 1.27e+01 1gnd c.3.1.3 30422 d.16.1.6 37986 1t95A 240 1.31e+01 1ut8A 291 1.34e+01 a.60.7.1 -1036 c.120.1.2 -6675 1pud 386 1.38e+01 1pud c.1.20.1 29658 1r6fA 310 1.44e+01 unknown_sccs -11804 1vns 609 1.45e+01 1vns a.111.1.3 19061 1p49A 562 1.46e+01 c.76.1.2 -8432 1ii7A 333 1.49e+01 1ii7A d.159.1.4 62415 1l8aA 886 1.54e+01 c.36.1.6 73678 c.36.1.10 73677 c.48.1.1 73679 1o0xA 262 1.55e+01 d.127.1.1 80755 1vd5A 377 1.58e+01 1hyeA 313 1.60e+01 2cmd c.2.1.5 61400 d.162.1.1 61401 1dc1A 323 1.62e+01 1dc1A c.52.1.11 33321 1r5yA 386 1.69e+01 c.1.20.1 -5626 1k0fA 277 1.71e+01 c.92.2.2 71974 2sqcA 631 1.94e+01 2sqcA a.102.4.2 18854 a.102.4.2 18855 1p9qC 256 1.97e+01 1mmsA 140 2.00e+01 1mmsA a.4.7.1 16247 d.47.1.1 38766 1giqA 413 2.00e+01 d.166.1.1 76224 d.166.1.1 76225 1chmA 401 2.02e+01 1chmA c.55.2.1 33545 d.127.1.1 41142 1dl2A 511 2.12e+01 1dl2A a.102.2.1 18844 1e3dB 542 2.12e+01 1h2rL e.18.1.1 59189 1mkiA 330 2.14e+01 e.3.1.2 84994 1e19A 314 2.18e+01 1b7bA c.73.1.1 34967 1nbfA 353 2.23e+01 d.3.1.9 80387 1oyc 400 2.25e+01 1oyc c.1.4.1 28603 1uurA 473 2.42e+01 a.47.1.1 -968 b.2.5.5 -2904 d.93.1.1 -10632 1o20A 427 2.43e+01 c.82.1.1 86556 1m3qA 317 2.49e+01 a.96.1.3 -1288 d.129.1.2 -11006 1hn0A 1021 2.50e+01 a.102.3.2 83616 b.18.1.17 83617 b.24.1.1 83618 b.30.5.2 83619 1c4oA 664 2.59e+01 1d2mA c.37.1.19 32415 c.37.1.19 32416 1ebmA 317 2.62e+01 1ebmA a.96.1.3 18751 d.129.1.2 41300 1foeA 377 2.67e+01 1foeA a.87.1.1 18517 b.55.1.1 26969 1jeoA 180 2.69e+01 c.80.1.3 66611 1fm9D 272 2.70e+01 2prgA a.123.1.1 19313 1sek 378 2.71e+01 1sek e.1.1.1 42675 1ho8A 480 2.74e+01 1ho8A a.118.1.9 61107 1fcqA 350 2.83e+01 c.1.8.9 65006 1q6hA 224 2.88e+01 d.26.1.1 -9487 1qvbA 481 2.92e+01 1qvbA c.1.8.4 28983 1lldA 319 2.96e+01 3ldh c.2.1.5 30177 d.162.1.1 42144 1nb8A 353 2.96e+01 d.3.1.9 80385 1qzzA 374 2.97e+01 a.4.5.29 -277 c.66.1.12 -8045 3xis 387 3.02e+01 4xis c.1.15.3 29423 1gxmA 332 3.08e+01 a.102.5.1 76371 1s9rA 410 3.11e+01 unknown_sccs -10989 1qlnA 883 3.11e+01 1cezA e.8.1.3 43111 2ahjA 206 3.15e+01 2ahjA d.149.1.1 41772 1i7kA 179 3.18e+01 1u9aA d.20.1.1 61889 1nd7A 374 3.20e+01 d.148.1.1 -11394 1lci 550 3.26e+01 1lci e.23.1.1 43349 1gw5A 621 3.33e+01 a.118.1.10 70629 1ei6A 406 3.35e+01 unknown_sccs -8436 1gw5S 142 3.39e+01 d.110.4.2 70633 3grs 478 3.43e+01 3grs c.3.1.5 30441 c.3.1.5 30442 d.87.1.1 40152 1m7gA 211 3.43e+01 c.37.1.4 78724 1odfA 290 3.47e+01 c.37.1.6 -7045 1bdb 277 3.57e+01 1bdb c.2.1.2 29874 1ewqA 765 3.58e+01 1ewqA a.113.1.1 19069 c.37.1.12 32383 c.55.6.1 33740 d.75.2.1 39743 1i50B 1224 3.58e+01 e.29.1.1 61755 1jf2A 195 3.58e+01 1ej3A a.39.1.5 62930 1iirA 415 3.59e+01 1iirA c.87.1.5 62453 1eguA 731 3.64e+01 1eguA a.102.3.2 18850 b.24.1.1 23899 b.30.5.2 24423 1l2uA 245 3.65e+01 c.1.2.3 73516 1d2mA 665 3.72e+01 1d2mA c.37.1.19 32417 c.37.1.19 32418 1ibrB 462 3.73e+01 1qgrA a.118.1.1 19120 1dceA 567 3.76e+01 1dceA a.118.6.1 19191 b.7.4.1 23218 c.10.2.2 30867 1v7cA 351 3.82e+01 c.79.1.1 -8512 1sr9A 644 3.87e+01 1uehA 253 3.89e+01 c.101.1.1 -6879 1qf5A 431 3.89e+01 1adeA c.37.1.10 32212 1knqA 175 3.95e+01 c.37.1.17 72786 1cc1L 498 3.97e+01 1h2rL e.18.1.1 43301 1pbgA 468 3.98e+01 1e70M c.1.8.4 28946 1f7uA 607 3.98e+01 1bs2A a.27.1.1 59673 c.26.1.1 59674 d.67.2.1 59675 1h32A 261 3.99e+01 a.3.1.8 76618 a.3.1.8 76619