# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1tqnA 486 3.26e-58 1po5A 476 3.48e-55 a.104.1.1 -1467 1bu7A 455 2.65e-48 1bu7A a.104.1.1 18937 1jpzA 473 4.54e-48 a.104.1.1 67069 1n97A 389 4.64e-45 a.104.1.1 80335 1u13A 455 8.62e-41 1e9xA 455 1.29e-40 1ea1A a.104.1.1 18969 1h5zA 455 4.55e-40 a.104.1.1 -1456 1jipA 403 2.91e-30 a.104.1.1 66748 1odoA 408 3.56e-30 a.104.1.1 -1463 1gwiA 411 9.42e-30 a.104.1.1 76364 1eupA 403 1.46e-29 1rom a.104.1.1 18967 1cpt 412 1.68e-29 1cpt a.104.1.1 18968 1q5dA 419 5.12e-28 a.104.1.1 -1454 1izoA 417 9.64e-28 a.104.1.1 83851 1uedA 406 1.51e-27 a.104.1.1 -1459 1jfbA 404 3.64e-27 a.104.1.1 66624 1f24A 402 1.37e-26 1rom a.104.1.1 18953 1lfkA 398 3.22e-25 a.104.1.1 77926 1io7A 368 4.01e-25 1f4tA a.104.1.1 18971 1dz4A 414 5.01e-24 1phd a.104.1.1 18903 1qmqA 414 7.12e-24 1phd a.104.1.1 18907 1n40A 396 1.23e-20 a.104.1.1 79977 1h0hA 977 1.13e+00 b.52.2.2 76435 c.81.1.1 76436 2gwxA 267 1.46e+00 2prgA a.123.1.1 19323 1rpa 342 2.23e+00 1cviA c.60.1.2 33983 1uirA 314 2.30e+00 c.66.1.17 -8114 1a7cA 379 2.86e+00 1sek e.1.1.1 42660 1gntA 553 3.00e+00 e.26.1.1 70290 1gnlA 544 3.19e+00 e.26.1.1 70287 1h32A 261 3.41e+00 a.3.1.8 76618 a.3.1.8 76619 1q16A 1247 4.20e+00 b.52.2.2 -4337 c.81.1.1 -8547 1e2uA 553 4.68e+00 1e1dA e.26.1.1 43362 1kiyA 374 6.11e+00 a.128.1.5 72555 1nxcA 478 7.93e+00 a.102.2.1 -1333 12asA 330 8.28e+00 12asA d.104.1.1 40783 1h2rL 534 8.80e+00 1h2rL e.18.1.1 43298 1o1zA 234 8.91e+00 c.1.18.3 86555 1ad3A 452 9.03e+00 1ad3A c.82.1.1 35335 2hpaA 342 1.10e+01 1cviA c.60.1.2 33985 1fuiA 591 1.37e+01 1fuiA b.43.2.1 25674 c.85.1.1 35444 1lj5A 379 1.59e+01 e.1.1.1 73928 1c7nA 399 1.74e+01 1d2fA c.67.1.3 34413 2sqcA 631 1.93e+01 2sqcA a.102.4.2 18854 a.102.4.2 18855 1ornA 226 2.01e+01 a.96.1.1 87342 1ka2A 499 2.12e+01 d.92.1.5 77305 1rlr 761 2.12e+01 1rlr a.98.1.1 18753 c.7.1.2 30679 1ubkL 534 2.13e+01 e.18.1.1 88422 7aatA 401 2.16e+01 1ajsA c.67.1.1 34250 1h2wA 710 2.18e+01 b.69.7.1 76596 c.69.1.4 76597 1fmjA 351 2.31e+01 c.37.1.5 59879 1nd6A 354 2.32e+01 c.60.1.2 80407 1peqA 714 2.46e+01 1mkeA 152 2.50e+01 b.55.1.4 79231 1edzA 320 2.54e+01 1ee9A c.2.1.7 30287 c.58.1.2 33935 1c0pA 363 2.61e+01 1an9A c.4.1.2 30647 d.16.1.3 37934 1qfmA 710 2.61e+01 1qfmA b.69.7.1 27673 c.69.1.4 34641 1a4mA 349 2.63e+01 1a4mA c.1.9.1 29014 1hrdA 449 2.72e+01 1k89 c.2.1.7 30219 c.58.1.1 33867 1vizA 240 2.93e+01 c.1.4.1 -5212 1evlA 401 2.97e+01 1qf6A c.51.1.1 33202 d.104.1.1 40751 1ireA 204 2.97e+01 d.149.1.1 76769 1jkmB 361 3.10e+01 1jkmA c.69.1.2 34634 1ugpA 203 3.11e+01 1gp6A 356 3.28e+01 b.82.2.1 65441 1k8kA 418 3.28e+01 c.55.1.1 68305 c.55.1.1 68306 1i1iP 681 3.29e+01 1i1iP d.92.1.5 40297 1i0dA 332 3.42e+01 1pscA c.1.9.3 61487 1fm9D 272 3.47e+01 2prgA a.123.1.1 19313 1jqnA 883 3.48e+01 c.1.12.3 77159 1q4gA 553 3.62e+01 a.93.1.2 -1248 g.3.11.1 -12492 1uekA 275 3.68e+01 d.14.1.5 88483 d.58.26.5 88484 1k1xA 659 3.84e+01 a.8.3.2 84279 b.30.5.8 84280 c.6.2.2 84281 1ig8A 486 3.87e+01 2yhx c.55.1.3 64746 c.55.1.3 64747 1gx5A 536 3.88e+01 e.8.1.4 70682 6mhtA 327 3.97e+01 6mhtA c.66.1.26 34226 1o6uA 403 3.98e+01 a.5.3.1 -366 unknown_sccs -3048 c.13.1.1 -6221 1jqgA 433 3.99e+01 c.56.5.1 71791 d.58.3.1 71792