# TARGET T0277 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0277.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 19 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.006 0.003 0.064 0.666 0.099 0.162 2 A 0.003 0.001 0.044 0.837 0.052 0.063 3 S 0.002 0.001 0.026 0.890 0.029 0.051 4 L 0.001 0.001 0.004 0.982 0.005 0.008 5 A 0.001 0.001 0.001 0.989 0.004 0.004 6 R 0.001 0.001 0.001 0.989 0.005 0.004 7 A 0.001 0.001 0.002 0.990 0.004 0.003 8 V 0.001 0.001 0.003 0.984 0.006 0.006 9 E 0.001 0.001 0.005 0.977 0.010 0.007 10 R 0.001 0.001 0.006 0.976 0.008 0.009 11 L 0.001 0.001 0.005 0.965 0.015 0.014 12 K 0.001 0.001 0.006 0.953 0.022 0.018 13 A 0.001 0.001 0.006 0.853 0.063 0.076 14 A 0.001 0.001 0.008 0.808 0.074 0.108 15 L 0.003 0.004 0.012 0.702 0.119 0.160 16 E 0.003 0.004 0.020 0.650 0.173 0.150 17 R 0.002 0.001 0.018 0.559 0.161 0.259 18 P 0.002 0.002 0.017 0.293 0.213 0.473 19 K 0.002 0.004 0.022 0.483 0.182 0.306 20 D 0.003 0.002 0.020 0.726 0.105 0.144 21 E 0.002 0.001 0.018 0.912 0.038 0.030 22 F 0.006 0.002 0.015 0.902 0.034 0.040 23 I 0.010 0.003 0.011 0.927 0.020 0.029 24 R 0.004 0.001 0.005 0.977 0.007 0.006 25 D 0.006 0.001 0.007 0.968 0.012 0.007 26 S 0.010 0.001 0.008 0.940 0.023 0.018 27 A 0.016 0.002 0.005 0.947 0.016 0.015 28 I 0.012 0.001 0.004 0.955 0.014 0.014 29 Q 0.016 0.001 0.003 0.937 0.017 0.026 30 R 0.033 0.002 0.003 0.907 0.017 0.037 31 F 0.036 0.002 0.002 0.918 0.008 0.035 32 E 0.023 0.001 0.002 0.954 0.005 0.016 33 F 0.025 0.001 0.005 0.941 0.006 0.022 34 T 0.011 0.001 0.007 0.965 0.004 0.011 35 F 0.010 0.001 0.014 0.941 0.011 0.023 36 E 0.004 0.001 0.021 0.934 0.016 0.023 37 L 0.003 0.002 0.019 0.942 0.017 0.018 38 A 0.003 0.001 0.011 0.951 0.014 0.019 39 W 0.002 0.001 0.006 0.969 0.011 0.011 40 K 0.001 0.001 0.004 0.975 0.012 0.008 41 T 0.001 0.001 0.003 0.985 0.006 0.005 42 L 0.001 0.001 0.002 0.990 0.004 0.004 43 K 0.001 0.001 0.002 0.990 0.006 0.003 44 T 0.001 0.001 0.001 0.991 0.006 0.002 45 F 0.001 0.001 0.001 0.993 0.004 0.002 46 L 0.001 0.001 0.004 0.985 0.008 0.003 47 E 0.001 0.001 0.009 0.973 0.013 0.005 48 L 0.001 0.001 0.007 0.957 0.020 0.016 49 Q 0.001 0.001 0.006 0.854 0.037 0.101 50 G 0.001 0.001 0.001 0.018 0.071 0.908 51 L 0.012 0.007 0.005 0.009 0.156 0.811 52 E 0.053 0.012 0.011 0.007 0.216 0.701 53 A 0.122 0.030 0.020 0.017 0.281 0.529 54 R 0.144 0.015 0.014 0.019 0.169 0.639 55 S 0.104 0.027 0.004 0.029 0.102 0.734 56 P 0.004 0.001 0.016 0.905 0.037 0.037 57 R 0.001 0.001 0.010 0.970 0.014 0.006 58 A 0.001 0.001 0.007 0.983 0.008 0.002 59 A 0.001 0.001 0.006 0.988 0.005 0.001 60 I 0.001 0.001 0.002 0.990 0.004 0.004 61 R 0.001 0.001 0.004 0.986 0.006 0.003 62 G 0.001 0.001 0.006 0.976 0.011 0.006 63 A 0.001 0.001 0.011 0.968 0.013 0.006 64 F 0.001 0.001 0.024 0.935 0.027 0.013 65 Q 0.002 0.001 0.033 0.889 0.054 0.021 66 V 0.004 0.001 0.041 0.748 0.130 0.076 67 G 0.012 0.003 0.032 0.222 0.320 0.411 68 L 0.049 0.024 0.026 0.077 0.421 0.403 69 L 0.066 0.022 0.022 0.071 0.533 0.285 70 P 0.019 0.004 0.014 0.043 0.614 0.305 71 E 0.017 0.004 0.028 0.120 0.520 0.310 72 D 0.029 0.004 0.022 0.658 0.198 0.089 73 P 0.061 0.004 0.018 0.731 0.119 0.067 74 F 0.081 0.005 0.013 0.838 0.033 0.030 75 W 0.107 0.005 0.020 0.841 0.013 0.013 76 L 0.080 0.002 0.024 0.875 0.011 0.009 77 E 0.071 0.001 0.020 0.885 0.014 0.009 78 M 0.066 0.004 0.013 0.860 0.027 0.030 79 L 0.122 0.014 0.013 0.750 0.058 0.042 80 E 0.104 0.003 0.021 0.600 0.176 0.096 81 L 0.043 0.006 0.027 0.562 0.256 0.106 82 R 0.072 0.013 0.038 0.348 0.347 0.183 83 N 0.092 0.007 0.020 0.170 0.341 0.370 84 L 0.118 0.013 0.023 0.184 0.277 0.386 85 T 0.281 0.027 0.027 0.152 0.261 0.251 86 N 0.388 0.015 0.035 0.137 0.209 0.217 87 H 0.415 0.011 0.043 0.097 0.246 0.188 88 T 0.407 0.038 0.037 0.064 0.232 0.222 89 Y 0.196 0.036 0.010 0.033 0.223 0.502 90 D 0.019 0.007 0.004 0.049 0.253 0.669 91 E 0.001 0.001 0.021 0.935 0.037 0.007 92 A 0.001 0.001 0.021 0.937 0.039 0.002 93 L 0.001 0.001 0.030 0.940 0.027 0.002 94 A 0.001 0.001 0.009 0.965 0.016 0.009 95 E 0.001 0.001 0.004 0.973 0.014 0.009 96 R 0.001 0.001 0.007 0.976 0.011 0.004 97 I 0.001 0.001 0.007 0.977 0.010 0.004 98 Y 0.001 0.001 0.015 0.961 0.014 0.009 99 A 0.001 0.001 0.014 0.945 0.018 0.022 100 E 0.001 0.001 0.018 0.917 0.022 0.042 101 L 0.001 0.002 0.013 0.879 0.029 0.077 102 P 0.001 0.001 0.100 0.757 0.079 0.063 103 K 0.001 0.001 0.143 0.693 0.112 0.050 104 A 0.001 0.001 0.112 0.751 0.089 0.047 105 L 0.001 0.001 0.040 0.830 0.081 0.047 106 E 0.001 0.001 0.034 0.833 0.075 0.057 107 R 0.001 0.001 0.036 0.906 0.028 0.029 108 F 0.001 0.001 0.017 0.941 0.017 0.024 109 Q 0.001 0.001 0.013 0.939 0.019 0.028 110 E 0.001 0.001 0.016 0.963 0.011 0.009 111 L 0.001 0.001 0.009 0.966 0.014 0.009 112 L 0.001 0.001 0.010 0.968 0.015 0.007 113 R 0.001 0.001 0.009 0.925 0.032 0.034 114 R 0.001 0.001 0.013 0.953 0.020 0.014 115 L 0.001 0.001 0.015 0.944 0.028 0.012 116 E 0.001 0.001 0.032 0.855 0.080 0.031 117 E 0.001 0.001 0.015 0.475 0.169 0.340 118 P 0.001 0.001 0.004 0.049 0.113 0.833 119 A 0.001 0.001 0.001 0.006 0.028 0.964