# TARGET T0277 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0277.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 12.7341 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.960 0.002 0.004 0.031 0.001 0.001 0.001 0.001 0.001 0.001 0.001 2 A 0.989 0.001 0.002 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 3 S 0.940 0.001 0.002 0.052 0.001 0.002 0.001 0.001 0.002 0.001 0.001 4 L 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 5 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 6 R 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 7 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 8 V 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 9 E 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 10 R 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 11 L 0.973 0.001 0.001 0.027 0.001 0.001 0.001 0.001 0.001 0.001 0.001 12 K 0.990 0.001 0.002 0.005 0.001 0.001 0.002 0.001 0.001 0.001 0.001 13 A 0.959 0.001 0.004 0.034 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 A 0.807 0.005 0.024 0.157 0.002 0.002 0.002 0.001 0.002 0.001 0.001 15 L 0.673 0.028 0.110 0.146 0.006 0.015 0.009 0.003 0.008 0.001 0.001 16 E 0.418 0.085 0.137 0.277 0.010 0.034 0.019 0.004 0.014 0.002 0.001 17 R 0.077 0.116 0.564 0.010 0.009 0.037 0.014 0.001 0.169 0.002 0.001 18 P 0.347 0.007 0.562 0.018 0.001 0.026 0.002 0.001 0.001 0.001 0.034 19 K 0.572 0.062 0.113 0.168 0.019 0.019 0.019 0.013 0.007 0.008 0.001 20 D 0.275 0.112 0.256 0.123 0.044 0.081 0.048 0.009 0.046 0.005 0.001 21 E 0.848 0.021 0.043 0.058 0.005 0.012 0.005 0.002 0.004 0.001 0.001 22 F 0.894 0.025 0.029 0.036 0.004 0.008 0.001 0.001 0.003 0.001 0.001 23 I 0.862 0.040 0.016 0.064 0.004 0.008 0.001 0.001 0.005 0.001 0.001 24 R 0.873 0.039 0.051 0.012 0.005 0.010 0.004 0.001 0.004 0.001 0.001 25 D 0.932 0.011 0.019 0.022 0.003 0.007 0.004 0.001 0.001 0.001 0.001 26 S 0.937 0.014 0.009 0.022 0.008 0.001 0.004 0.003 0.001 0.001 0.001 27 A 0.958 0.011 0.006 0.020 0.002 0.002 0.001 0.001 0.001 0.001 0.001 28 I 0.961 0.016 0.009 0.008 0.001 0.002 0.001 0.001 0.001 0.001 0.001 29 Q 0.986 0.001 0.001 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 30 R 0.947 0.015 0.005 0.026 0.003 0.001 0.002 0.001 0.001 0.001 0.001 31 F 0.968 0.012 0.005 0.009 0.001 0.002 0.001 0.001 0.001 0.001 0.001 32 E 0.989 0.005 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 33 F 0.996 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 34 T 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 35 F 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 36 E 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 37 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 38 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 W 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 K 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 41 T 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 42 L 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 43 K 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 44 T 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 45 F 0.993 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 46 L 0.977 0.001 0.001 0.020 0.001 0.001 0.001 0.001 0.001 0.001 0.001 47 E 0.976 0.002 0.003 0.015 0.001 0.001 0.003 0.001 0.001 0.001 0.001 48 L 0.880 0.015 0.015 0.075 0.002 0.005 0.003 0.001 0.004 0.001 0.001 49 Q 0.230 0.016 0.027 0.701 0.004 0.003 0.010 0.001 0.007 0.001 0.001 50 G 0.023 0.001 0.011 0.011 0.011 0.003 0.278 0.590 0.002 0.070 0.001 51 L 0.277 0.205 0.286 0.145 0.034 0.032 0.005 0.002 0.011 0.002 0.001 52 E 0.166 0.099 0.305 0.164 0.065 0.085 0.059 0.015 0.032 0.009 0.001 53 A 0.438 0.104 0.244 0.126 0.031 0.036 0.007 0.004 0.008 0.002 0.001 54 R 0.392 0.086 0.080 0.390 0.016 0.017 0.005 0.002 0.011 0.001 0.001 55 S 0.063 0.154 0.464 0.007 0.167 0.015 0.013 0.002 0.086 0.028 0.001 56 P 0.804 0.002 0.110 0.032 0.001 0.018 0.001 0.001 0.001 0.001 0.030 57 R 0.909 0.009 0.029 0.038 0.003 0.002 0.003 0.003 0.002 0.002 0.001 58 A 0.940 0.002 0.011 0.033 0.002 0.003 0.005 0.003 0.001 0.001 0.001 59 A 0.975 0.002 0.004 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 60 I 0.985 0.002 0.003 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 61 R 0.994 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 62 G 0.994 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 63 A 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 64 F 0.990 0.002 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 65 Q 0.975 0.004 0.003 0.016 0.001 0.001 0.001 0.001 0.001 0.001 0.001 66 V 0.414 0.008 0.009 0.563 0.002 0.001 0.001 0.001 0.002 0.001 0.001 67 G 0.122 0.004 0.016 0.029 0.013 0.004 0.470 0.316 0.006 0.019 0.001 68 L 0.321 0.100 0.187 0.293 0.014 0.058 0.014 0.002 0.007 0.003 0.001 69 L 0.055 0.210 0.391 0.015 0.037 0.075 0.023 0.001 0.191 0.002 0.001 70 P 0.470 0.003 0.427 0.047 0.001 0.024 0.001 0.001 0.001 0.004 0.021 71 E 0.309 0.075 0.086 0.377 0.055 0.024 0.027 0.025 0.016 0.005 0.001 72 D 0.312 0.175 0.297 0.048 0.051 0.037 0.011 0.004 0.053 0.010 0.001 73 P 0.885 0.006 0.061 0.029 0.002 0.010 0.002 0.002 0.001 0.001 0.001 74 F 0.917 0.015 0.017 0.033 0.006 0.004 0.002 0.002 0.002 0.001 0.001 75 W 0.958 0.007 0.006 0.022 0.001 0.003 0.001 0.001 0.001 0.001 0.001 76 L 0.977 0.006 0.004 0.008 0.001 0.002 0.001 0.001 0.001 0.001 0.001 77 E 0.964 0.006 0.006 0.018 0.001 0.003 0.001 0.001 0.001 0.001 0.001 78 M 0.942 0.003 0.003 0.044 0.001 0.002 0.002 0.001 0.002 0.001 0.001 79 L 0.928 0.009 0.011 0.043 0.001 0.004 0.002 0.001 0.002 0.001 0.001 80 E 0.943 0.008 0.012 0.024 0.003 0.002 0.006 0.001 0.001 0.001 0.001 81 L 0.630 0.013 0.019 0.312 0.005 0.007 0.007 0.003 0.003 0.001 0.001 82 R 0.584 0.054 0.062 0.234 0.010 0.014 0.028 0.004 0.008 0.001 0.001 83 N 0.216 0.049 0.081 0.229 0.021 0.113 0.202 0.013 0.072 0.004 0.001 84 L 0.363 0.095 0.129 0.269 0.024 0.046 0.045 0.009 0.017 0.002 0.001 85 T 0.465 0.152 0.112 0.202 0.028 0.018 0.009 0.004 0.009 0.003 0.001 86 N 0.325 0.134 0.104 0.266 0.055 0.029 0.037 0.016 0.028 0.004 0.001 87 H 0.183 0.216 0.200 0.093 0.094 0.057 0.078 0.015 0.050 0.014 0.001 88 T 0.379 0.174 0.223 0.138 0.029 0.031 0.007 0.003 0.010 0.005 0.002 89 Y 0.225 0.160 0.292 0.125 0.119 0.038 0.017 0.005 0.011 0.008 0.001 90 D 0.050 0.043 0.296 0.023 0.024 0.332 0.007 0.001 0.216 0.006 0.001 91 E 0.987 0.001 0.002 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 92 A 0.995 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 93 L 0.984 0.001 0.001 0.016 0.001 0.001 0.001 0.001 0.001 0.001 0.001 94 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 95 E 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 96 R 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 97 I 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 98 Y 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 99 A 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 100 E 0.624 0.001 0.001 0.375 0.001 0.001 0.001 0.001 0.001 0.001 0.001 101 L 0.747 0.009 0.098 0.043 0.001 0.012 0.007 0.002 0.081 0.001 0.001 102 P 0.977 0.001 0.015 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 103 K 0.953 0.001 0.003 0.035 0.001 0.001 0.002 0.004 0.001 0.001 0.001 104 A 0.935 0.001 0.003 0.057 0.001 0.001 0.001 0.001 0.001 0.001 0.001 105 L 0.990 0.001 0.003 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 106 E 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 107 R 0.983 0.001 0.001 0.016 0.001 0.001 0.001 0.001 0.001 0.001 0.001 108 F 0.985 0.001 0.001 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 109 Q 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 110 E 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 111 L 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 112 L 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 113 R 0.994 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 114 R 0.923 0.001 0.001 0.074 0.001 0.001 0.001 0.001 0.001 0.001 0.001 115 L 0.569 0.011 0.040 0.365 0.002 0.004 0.003 0.002 0.004 0.001 0.001 116 E 0.461 0.035 0.073 0.203 0.008 0.043 0.153 0.005 0.015 0.003 0.001 117 E 0.097 0.255 0.483 0.012 0.024 0.023 0.010 0.001 0.093 0.002 0.001 118 P 0.144 0.009 0.757 0.015 0.001 0.043 0.001 0.001 0.003 0.001 0.027 119 A 0.406 0.098 0.207 0.086 0.065 0.023 0.034 0.044 0.015 0.022 0.001