# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jogA 146 7.97e-21 a.24.16.2 77142 1eq1A 166 3.03e-01 a.63.1.1 64910 1p4oA 322 5.69e-01 d.144.1.7 87775 1ah7 245 7.40e-01 1ah7 a.124.1.1 19339 1jqhA 308 8.24e-01 d.144.1.7 71793 1g55A 343 9.99e-01 1g55A c.66.1.26 34247 1dgmA 363 9.99e-01 1bx4A c.72.1.1 34936 1or7A 194 1.07e+00 a.4.13.2 87332 a.177.1.1 87333 1buoA 121 1.31e+00 1buoA d.42.1.1 38631 1rx0A 393 1.61e+00 a.29.3.1 -742 e.6.1.1 -11858 1t7pA 698 2.34e+00 1t7pA c.55.3.5 33712 e.8.1.1 43005 1k6wA 426 2.76e+00 b.92.1.2 68236 c.1.9.5 68237 1aua 296 2.95e+00 1aua a.5.3.1 16290 c.13.1.1 30882 1s7zA 117 3.85e+00 unknown_sccs -344 1rktA 205 4.23e+00 a.4.1.9 -210 a.121.1.1 -1663 2cxbA 124 4.31e+00 1ycc a.3.1.1 15891 1cxc 124 4.38e+00 1ycc a.3.1.1 15890 1e6yB 433 4.45e+00 1mroB a.89.1.1 18535 d.58.31.2 39453 3crxA 343 4.49e+00 4crxA a.60.9.1 18101 d.163.1.1 42161 1fr0A 125 4.50e+00 2a0b a.24.10.1 59996 1cxzB 86 4.95e+00 1cxzB a.2.6.1 15705 1kbuA 349 5.14e+00 a.60.9.1 72284 d.163.1.1 72285 2a0b 125 5.47e+00 2a0b a.24.10.1 16630 1bhdA 118 5.74e+00 1bkrA a.40.1.1 17398 1aew 174 5.94e+00 2fha a.25.1.1 16676 1fpoA 171 6.39e+00 1fpoA a.2.3.1 15693 a.23.1.1 16487 1fmjA 351 6.39e+00 c.37.1.5 59879 1jigA 146 6.43e+00 a.25.1.1 71685 1bgp 309 7.02e+00 1bgp a.93.1.1 18690 1dat 174 7.02e+00 2fha a.25.1.1 16677 1mojA 182 8.07e+00 a.25.1.1 -669 1j99A 293 8.09e+00 c.37.1.5 71618 2tct 207 8.20e+00 2tct a.4.1.9 16063 a.121.1.1 19240 1gehA 444 8.30e+00 c.1.14.1 65181 d.58.9.1 65182 1g60A 260 8.46e+00 c.66.1.11 70151 1r8iA 213 8.66e+00 unknown_sccs -411 1js8A 394 9.15e+00 a.86.1.1 67219 b.112.1.1 67220 1dwkA 156 9.39e+00 1dw9A a.35.1.4 17075 d.72.1.1 39606 3lynA 136 9.51e+00 1lis a.19.1.1 16413 1liaA 164 9.59e+00 1cpcA a.1.1.3 15661 1irk 306 9.59e+00 1fmk d.144.1.7 41703 1i58A 189 1.02e+01 1b3qA d.122.1.3 61773 1mx3A 347 1.04e+01 c.2.1.4 79638 c.23.12.1 79639 1m5tA 124 1.05e+01 c.23.1.1 78660 1i39A 225 1.05e+01 1ekeA c.55.3.1 61585 1rkeA 262 1.05e+01 a.24.9.1 -582 a.24.9.1 -583 1pot 325 1.06e+01 1pot c.94.1.1 35807 1g94A 448 1.09e+01 b.71.1.1 65169 c.1.8.1 65170 2sas 185 1.12e+01 2sas a.39.1.5 17258 1mb3A 124 1.13e+01 c.23.1.1 78907 1qhhA 167 1.19e+01 1pjr c.37.1.19 32393 1bjz 207 1.23e+01 2tct a.4.1.9 16065 a.121.1.1 19242 1jcrA 377 1.25e+01 a.118.6.1 66506 1d8dA 377 1.29e+01 1ft1A a.118.6.1 19185 1ft1A 377 1.36e+01 1ft1A a.118.6.1 19186 1lis 136 1.42e+01 1lis a.19.1.1 16406 2lisA 136 1.42e+01 1lis a.19.1.1 16405 1b8dA 164 1.46e+01 1cpcA a.1.1.3 15665 1tk9A 188 1.52e+01 1ibrB 462 1.56e+01 1qgrA a.118.1.1 19120 1f1oA 431 1.62e+01 1f1oA a.127.1.1 19433 1chkA 238 1.63e+01 1chkA d.2.1.7 36999 1cbg 490 1.69e+01 1e70M c.1.8.4 28933 1gr8A 412 1.72e+01 1ockA 412 1.72e+01 c.117.1.1 86802 1bz4A 144 1.79e+01 1nfn a.24.1.1 16521 1uc2A 481 1.81e+01 unknown_sccs -11725 1fc3A 120 1.85e+01 1fc3A a.4.6.3 16237 1ihgA 370 1.85e+01 2cpl a.118.8.1 62380 b.62.1.1 62381 1qq7A 253 1.94e+01 1qq5A c.108.1.1 43329 1a3h 300 1.95e+01 7a3hA c.1.8.3 28819 7a3hA 303 1.95e+01 7a3hA c.1.8.3 28817 1h16A 759 1.97e+01 c.7.1.1 76462 1m6kA 251 2.01e+01 e.3.1.1 78695 2pflA 759 2.01e+01 1cm5A c.7.1.1 30675 1qq5A 253 2.04e+01 1qq5A c.108.1.1 43327 1egdA 396 2.07e+01 3mdeA a.29.3.1 16596 e.6.1.1 42857 1l3lA 234 2.11e+01 a.4.6.2 73541 d.110.5.1 73542 4crxA 322 2.15e+01 4crxA a.60.9.1 18095 d.163.1.1 42155 1dk8A 147 2.17e+01 1agrE a.91.1.1 18548 1v4vA 376 2.22e+01 c.87.1.3 -8583 3pflA 759 2.24e+01 1cm5A c.7.1.1 30673 1dl2A 511 2.26e+01 1dl2A a.102.2.1 18844 1k1aA 241 2.32e+01 d.211.1.1 67992 1crxA 322 2.34e+01 4crxA a.60.9.1 18097 d.163.1.1 42157 1h6pA 203 2.35e+01 a.146.1.1 60690 1aq6A 253 2.36e+01 1qq5A c.108.1.1 43331 1cm5A 759 2.38e+01 1cm5A c.7.1.1 30671 1i50B 1224 2.38e+01 e.29.1.1 61755 1ir3A 306 2.40e+01 1fmk d.144.1.7 41702 1pq9A 253 2.44e+01 a.123.1.1 -1687 1b4eA 323 2.44e+01 1b4kA c.1.10.3 29186 1oahA 519 2.49e+01 a.138.1.3 86736 1na3A 91 2.53e+01 k.38.1.1 85481 1jthB 77 2.54e+01 h.1.15.1 67271 1d1qA 161 2.55e+01 1dg9A c.44.1.1 32642 1pjr 724 2.55e+01 1pjr c.37.1.19 32391 c.37.1.19 32392 3minC 491 2.60e+01 1qguA c.92.2.3 35607 1bk5A 422 2.61e+01 1bk5A a.118.1.1 19130 1h5vA 304 2.63e+01 c.1.8.3 70898 1hrkA 359 2.64e+01 1hrkA c.92.1.1 61228 1a32 88 2.65e+01 1a32 a.16.1.2 16384 1q0qA 406 2.65e+01 1jvsA 400 2.66e+01 a.69.3.1 77187 c.2.1.3 77188 d.81.1.3 77189 1s9aA 257 2.67e+01 1q1aA 289 2.68e+01 c.31.1.5 -6781 1kfuS 184 2.76e+01 a.39.1.8 68574 1dw9A 156 2.79e+01 1dw9A a.35.1.4 17065 d.72.1.1 39596 1p9bA 442 2.81e+01 c.37.1.10 -7115 2fokA 579 2.84e+01 2fokA a.4.5.12 16131 a.4.5.12 16132 a.4.5.12 16133 c.52.1.12 33323 1g03A 134 2.94e+01 1qrjB a.73.1.1 60162 1m1nA 491 2.97e+01 c.92.2.3 78417 1lpe 144 3.01e+01 1nfn a.24.1.1 16524 1sqsA 242 3.03e+01 unknown_sccs -6433 1qn2A 100 3.05e+01 1ycc a.3.1.1 15882 1oj7A 408 3.08e+01 1o3uA 135 3.08e+01 a.24.16.3 86615 1elrA 131 3.09e+01 1a17 a.118.8.1 19209 1jnyA 435 3.18e+01 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 1liiA 363 3.19e+01 c.72.1.1 73921 1j09A 468 3.20e+01 a.97.1.1 77025 c.26.1.1 77026 1k5hA 398 3.31e+01 a.69.3.1 68192 c.2.1.3 68193 d.81.1.3 68194 1im8A 244 3.32e+01 c.66.1.14 66212 1f44A 324 3.35e+01 a.60.9.1 64982 d.163.1.1 64983 1hyqA 263 3.35e+01 1hyqA c.37.1.10 61412 1uqvA 85 3.38e+01 a.60.1.2 -1010 1fp4A 492 3.40e+01 c.92.2.3 76187 1b43A 340 3.43e+01 1a76 a.60.7.1 18092 c.120.1.2 33362 1ee4A 423 3.44e+01 1ee4A a.118.1.1 19128 1im4A 221 3.53e+01 unknown_sccs 62581 1hvvA 75 3.54e+01 1hvvA h.1.15.1 45639 1vpwA 340 3.55e+01 1qpzA a.35.1.5 17087 c.93.1.1 35680 1sfcB 83 3.56e+01 1sfcB h.1.15.1 45644 1ej5A 107 3.65e+01 1ej5A a.68.1.1 18268 1qbqA 333 3.67e+01 1ft1A a.118.6.1 19187 1cg5A 141 3.71e+01 1abwA a.1.1.2 15406 1qntA 176 3.71e+01 1sfe a.4.2.1 16074 c.55.7.1 33749 1ukz 203 3.89e+01 1zin c.37.1.1 31840 1teaA 299 3.94e+01 1nznA 126 3.94e+01 a.118.8.1 -1616 1kl7A 514 3.94e+01 c.79.1.1 72678 1i8jA 323 3.98e+01 1b4kA c.1.10.3 61968