# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jogA 146 3.82e-22 a.24.16.2 77142 1g55A 343 1.43e-01 1g55A c.66.1.26 34247 1i50B 1224 1.68e+00 e.29.1.1 61755 1ghc 75 2.61e+00 1hstA a.4.5.13 16142 2cxbA 124 2.68e+00 1ycc a.3.1.1 15891 1cxc 124 3.24e+00 1ycc a.3.1.1 15890 1g60A 260 3.55e+00 c.66.1.11 70151 1jqhA 308 4.75e+00 d.144.1.7 71793 1s7zA 117 5.21e+00 unknown_sccs -344 1jl2A 156 5.89e+00 c.55.3.1 66822 1oj5A 132 7.05e+00 unknown_sccs -10848 1o0uA 429 7.55e+00 c.118.1.1 80743 1p4oA 322 8.23e+00 d.144.1.7 87775 1h5vA 304 8.81e+00 c.1.8.3 70898 1o3uA 135 8.84e+00 a.24.16.3 86615 1i58A 189 8.98e+00 1b3qA d.122.1.3 61773 1fkmA 396 9.38e+00 1fkmA a.69.2.1 18315 a.69.2.1 18316 7a3hA 303 9.93e+00 7a3hA c.1.8.3 28817 1eupA 403 1.08e+01 1rom a.104.1.1 18967 1j6wA 175 1.08e+01 1j98A d.185.1.2 62663 1a3h 300 1.11e+01 7a3hA c.1.8.3 28819 1h5wA 309 1.14e+01 e.27.1.1 65635 1ogoX 574 1.16e+01 unknown_sccs -3237 unknown_sccs -4783 1jnyA 435 1.23e+01 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 1bp3A 191 1.24e+01 1huw a.26.1.1 16838 1iyhA 198 1.25e+01 a.45.1.1 83790 c.47.1.5 83791 1miwA 404 1.36e+01 a.173.1.1 79162 d.218.1.4 79163 1v9fA 325 1.37e+01 1mb3A 124 1.38e+01 c.23.1.1 78907 1jbwA 428 1.38e+01 c.59.1.2 62860 c.72.2.2 62861 1iygA 133 1.39e+01 a.118.8.1 76947 1jipA 403 1.40e+01 a.104.1.1 66748 1id2A 106 1.46e+01 1aac b.6.1.1 62288 1q15A 503 1.48e+01 c.26.2.1 -6625 d.153.1.1 -11400 1tmy 120 1.61e+01 1dbwA c.23.1.1 31083 1bxlA 181 1.70e+01 1maz f.1.4.1 43396 1im8A 244 1.71e+01 c.66.1.14 66212 1o1yA 239 1.79e+01 c.23.16.1 86554 1efuB 282 1.83e+01 1efuB a.5.2.2 58975 d.43.1.1 58976 d.43.1.1 38677 1j99A 293 1.94e+01 c.37.1.5 71618 1iqcA 308 1.95e+01 a.3.1.5 66266 a.3.1.5 66267 1kl7A 514 1.97e+01 c.79.1.1 72678 1oxa 403 2.05e+01 1f4tA a.104.1.1 18965 1b3qA 379 2.07e+01 1b3qA a.30.2.1 16993 b.40.7.1 25454 d.122.1.3 41112 1g94A 448 2.11e+01 b.71.1.1 65169 c.1.8.1 65170 1ezfA 340 2.13e+01 1ezfA a.128.1.2 19440 1jceA 344 2.28e+01 c.55.1.1 62876 c.55.1.1 62877 1vhnA 318 2.32e+01 c.1.4.1 -5209 1gpwB 201 2.47e+01 c.23.16.1 65461 1j9lA 247 2.57e+01 c.106.1.1 62762 1m5tA 124 2.58e+01 c.23.1.1 78660 1cby 259 2.59e+01 1cby d.103.1.1 40705 1qwiA 143 2.68e+01 d.227.1.1 -11183 1g19A 350 2.70e+01 2reb c.37.1.11 32284 d.48.1.1 38770 1ek0A 170 2.89e+01 1ctqA c.37.1.8 32076 1r5lA 262 2.97e+01 a.5.3.1 -360 c.13.1.1 -6215 1fmjA 351 3.06e+01 c.37.1.5 59879 3daaA 277 3.17e+01 1daaA e.17.1.1 43272 1j9jA 247 3.18e+01 c.106.1.1 62758 1aqm 453 3.21e+01 1smd b.71.1.1 27717 c.1.8.1 28704 1pd21 199 3.41e+01 1pd21 1l3lA 234 3.48e+01 a.4.6.2 73541 d.110.5.1 73542 1ji8A 111 3.61e+01 d.203.1.1 66733 1uaaA 673 3.63e+01 1pjr c.37.1.19 32401 c.37.1.19 32402 1v0dA 329 3.73e+01 1xgsA 295 3.77e+01 1bn5 a.4.5.25 16216 d.127.1.1 41153 1aa3 63 3.80e+01 2reb d.48.1.1 38769 1ijgA 309 3.87e+01 1fouA e.27.1.1 62493 1daaA 282 3.90e+01 1daaA e.17.1.1 43270 1qn2A 100 3.94e+01 1ycc a.3.1.1 15882